alexpiet/licking_behavior issues and pull requests

#100 - Approx model evidence for model comparison rather than just max likelihood

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#100 - Approx model evidence for model comparison rather than just max likelihood

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#99 - P(lick | lick) vs. P(lick | no lick) for GLM

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: presentation_feedback

#99 - P(lick | lick) vs. P(lick | no lick) for GLM

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: presentation_feedback

#98 - Rank of design matrix for GLM

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#98 - Rank of design matrix for GLM

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#97 - More intelligent feature selection for GLM

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#97 - More intelligent feature selection for GLM

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#96 - Try a longer post-reward filter

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#96 - Try a longer post-reward filter

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#95 - What fraction of licks are in the cluster driven by the change flash?

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#95 - What fraction of licks are in the cluster driven by the change flash?

Issue - State: closed - Opened by nickponvert over 5 years ago
Labels: presentation_feedback

#94 - "Sub-flash" wording is strange

Issue - State: closed - Opened by nickponvert over 5 years ago - 2 comments
Labels: presentation_feedback

#94 - "Sub-flash" wording is strange

Issue - State: closed - Opened by nickponvert over 5 years ago - 2 comments
Labels: presentation_feedback

#93 - 2 kinds of learning: rules vs. specific image sets

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: presentation_feedback

#93 - 2 kinds of learning: rules vs. specific image sets

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: presentation_feedback

#92 - Fit training sessions

Issue - State: closed - Opened by alexpiet over 5 years ago

#92 - Fit training sessions

Issue - State: closed - Opened by alexpiet over 5 years ago

#91 - Clustering

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#91 - Clustering

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#90 - Psytrack: More intelligent timing filters

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#90 - Psytrack: More intelligent timing filters

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#89 - Summary functions should return statistics

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#89 - Summary functions should return statistics

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#88 - Psytrack: Licking bouts that span two flashes

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#88 - Psytrack: Licking bouts that span two flashes

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#87 - Should we filter out bad epochs of each session?

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#87 - Should we filter out bad epochs of each session?

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#86 - Need better filtering of sessions by performance

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#86 - Need better filtering of sessions by performance

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#85 - Psytrack: More complete bootstrapping

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#85 - Psytrack: More complete bootstrapping

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#84 - Psytrack: compute emperical and predicted accuracy

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#84 - Psytrack: compute emperical and predicted accuracy

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#83 - Update psytools.load_mouse with SDK

Issue - State: closed - Opened by alexpiet over 5 years ago

#83 - Update psytools.load_mouse with SDK

Issue - State: closed - Opened by alexpiet over 5 years ago

#82 - WIP GLM fitting on subset of time bins / metric plotting

Pull Request - State: closed - Opened by nickponvert over 5 years ago - 1 comment

#82 - WIP GLM fitting on subset of time bins / metric plotting

Pull Request - State: closed - Opened by nickponvert over 5 years ago - 1 comment

#81 - Add a post-omitted-flash GLM filter

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: enhancement

#81 - Add a post-omitted-flash GLM filter

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: enhancement

#80 - Dropout analysis for GLMs

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#80 - Dropout analysis for GLMs

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#79 - Use autograd for autodifferentiation

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#79 - Use autograd for autodifferentiation

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#78 - get_sdk_ids() needs more functionality

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#78 - get_sdk_ids() needs more functionality

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#77 - pbstools is not compatible with python 3

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#77 - pbstools is not compatible with python 3

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#76 - psytrack: cross validation

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#76 - psytrack: cross validation

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#75 - working sdk fit/pickle saving

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#75 - working sdk fit/pickle saving

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#74 - glm: set up code to do bootstrapping parameter recovery

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#74 - glm: set up code to do bootstrapping parameter recovery

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#73 - psytrack: set up cross-validation and hyper-parameter optimization to work on session scale

Issue - State: closed - Opened by alexpiet over 5 years ago

#73 - psytrack: set up cross-validation and hyper-parameter optimization to work on session scale

Issue - State: closed - Opened by alexpiet over 5 years ago

#72 - psytrack: develop a timing strategy to include in fitting

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#72 - psytrack: develop a timing strategy to include in fitting

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment
Labels: enhancement

#71 - psytrack: get data for all behavioral sessions for a mouse

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#71 - psytrack: get data for all behavioral sessions for a mouse

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#70 - Sanity checks for psytrack method

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#70 - Sanity checks for psytrack method

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#69 - Update psytools.format_session with flash table in SDK

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#69 - Update psytools.format_session with flash table in SDK

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#68 - Interface function for pulling data into psytrack format

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments
Labels: enhancement

#68 - Interface function for pulling data into psytrack format

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments
Labels: enhancement

#67 - add method to pickle model using name and time in filename

Pull Request - State: closed - Opened by nickponvert over 5 years ago - 1 comment

#67 - add method to pickle model using name and time in filename

Pull Request - State: closed - Opened by nickponvert over 5 years ago - 1 comment

#66 - Model persistence

Pull Request - State: closed - Opened by nickponvert over 5 years ago - 1 comment

#66 - Model persistence

Pull Request - State: closed - Opened by nickponvert over 5 years ago - 1 comment

#65 - compute log-odds for all licks, and first lick in a bout

Issue - State: closed - Opened by alexpiet over 5 years ago

#65 - compute log-odds for all licks, and first lick in a bout

Issue - State: closed - Opened by alexpiet over 5 years ago

#64 - re-organized and added .gitignore

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#64 - re-organized and added .gitignore

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#63 - Code clean up

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#63 - Code clean up

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#62 - Try out slow-time-varying weights

Issue - State: closed - Opened by alexpiet over 5 years ago

#62 - Try out slow-time-varying weights

Issue - State: closed - Opened by alexpiet over 5 years ago

#61 - reorganize code

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#61 - reorganize code

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#60 - Added long reward filter

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#60 - Added long reward filter

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#59 - Generate synthetic data to test implementation

Issue - State: closed - Opened by alexpiet over 5 years ago

#59 - Generate synthetic data to test implementation

Issue - State: closed - Opened by alexpiet over 5 years ago

#58 - Make future directions fig for long-timescale filter

Issue - State: closed - Opened by nickponvert over 5 years ago - 2 comments

#58 - Make future directions fig for long-timescale filter

Issue - State: closed - Opened by nickponvert over 5 years ago - 2 comments

#57 - Need better model object persistence

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: enhancement

#57 - Need better model object persistence

Issue - State: closed - Opened by nickponvert over 5 years ago - 1 comment
Labels: enhancement

#56 - Script to load models from a fitting session

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#56 - Script to load models from a fitting session

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#55 - Make sure reward and lick times are aligned

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#55 - Make sure reward and lick times are aligned

Issue - State: closed - Opened by alexpiet over 5 years ago - 1 comment

#54 - Improvements for working with model objects

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#54 - Improvements for working with model objects

Pull Request - State: closed - Opened by nickponvert over 5 years ago

#53 - functions in analysis_tools.py need to be updated to new model object

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#53 - functions in analysis_tools.py need to be updated to new model object

Issue - State: closed - Opened by alexpiet over 5 years ago - 2 comments

#52 - add running speed to model schematic

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#52 - add running speed to model schematic

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#51 - make interface function for new model object and compare_model()

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

#51 - make interface function for new model object and compare_model()

Issue - State: closed - Opened by alexpiet over 5 years ago
Labels: enhancement

GitHub / alexpiet/licking_behavior issues and pull requests