Ecosyste.ms: Issues
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GitHub / alexenge/hu-neuro-pipeline issues and pull requests
#85 - Fix error when trying to interpolate bad channels from dict or list
Pull Request -
State: closed - Opened by alexenge almost 2 years ago
Labels: bug
#84 - Interpolating channels from dict/list is broken
Issue -
State: closed - Opened by alexenge almost 2 years ago
Labels: bug
#83 - Overwrite pre-existing files in `clean_dir` (as with `output_dir`, `epoch_dir`, etc.)
Pull Request -
State: closed - Opened by alexenge about 2 years ago
Labels: bug
#82 - Pipeline doesn't override existing cleaned (raw) datasets
Issue -
State: closed - Opened by alexenge about 2 years ago
Labels: bug
#81 - Prevent pipeline from failing with multiple datasets per participant due to raw data not getting pre-loaded
Pull Request -
State: closed - Opened by alexenge about 2 years ago
Labels: bug
#80 - Pipeline fails when specifying multiple `.vhdr` files per participant
Issue -
State: closed - Opened by alexenge about 2 years ago
Labels: bug
#79 - Allow specifying multiple EEG datasets (i.e., `.vhdr` files) per participant
Pull Request -
State: closed - Opened by alexenge about 2 years ago
Labels: enhancement
#78 - Provide functionality to automatically combine raw data sets
Issue -
State: closed - Opened by alexenge about 2 years ago
Labels: enhancement
#77 - Rename baseline correction arguments and allow skipping baseline correction
Pull Request -
State: closed - Opened by alexenge about 2 years ago
Labels: enhancement, breaking-change
#76 - Make it possible to skip baseline correction
Issue -
State: closed - Opened by alexenge about 2 years ago
Labels: enhancement
#75 - Config entry `rejected_epochs` is now called `auto_rejected_epochs`
Pull Request -
State: closed - Opened by alexenge about 2 years ago
Labels: bug
#74 - Make output of `reject_peak_to_peak` more consistent
Issue -
State: closed - Opened by alexenge about 2 years ago
Labels: bug
#73 - Allow specifying the number of extracted ICA components
Pull Request -
State: closed - Opened by alexenge about 2 years ago
Labels: enhancement, breaking-change
#72 - Allow specifying the number of extracted components for ICA
Issue -
State: closed - Opened by alexenge about 2 years ago
- 1 comment
Labels: enhancement
#71 - Use unfiltered (rather than filtered) epochs for TFR when setting `tfr_subtract_evoked`
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#70 - Allow choosing the mode of TFR baseline correction (e.g., percent, ratio, z-score)
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#69 - If `tfr_subtract_evoked`, TFR gets computed on filtered rather than unfiltered epochs
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#68 - Users should be able to choose the divisive baseline mode for TFR
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#67 - Apply additional full-epoch baseline correction for unbiased single-trial power
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#66 - Current single trial pre-stimulus baseline for TFR leads to biased results
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#65 - Adjust default wavelet frequencies (4, 40, 1) and number cycles (2, 20, 0.5)
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#64 - Adjust default frequencies and cycles for TFR
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug, breaking-change
#63 - Match epochs also in the case of missing *log file* trials
Issue -
State: open - Opened by alexenge over 2 years ago
Labels: enhancement
#62 - Enable overwriting of existing `.fif` files for evokeds
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#61 - `.fif` files for evokeds are not saved with `overwrite=True`
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#60 - Missing EEG epochs should go into the config
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#58 - Make GitHub action run only for *published* GitHub release
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#57 - Only published GitHub releases should trigger action
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#56 - Fix error when trying to create QC reports while skipping ocular correction
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#55 - Creation of HTML reports fails if `ocular_correction=None`
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#54 - Link workshop materials and UCAP example as sub-modules
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: documentation
#53 - Add workshop and UCAP example repos as submodules
Issue -
State: closed - Opened by alexenge over 2 years ago
- 1 comment
Labels: documentation
#52 - Improve R examples for `components`, using `list()` instead of `c()`
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: documentation
#51 - R examples don't work for single components
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: documentation
#50 - Naturalsort input files (e.g., log files) if directories are provided
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#49 - Naturalsort files if directories are provided
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#48 - Make UCAP fetcher accept float as input for `n_participants`
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#47 - UCAP fetcher doesn't accept float inputs for `n_participants`
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#46 - Improve UCAP fetcher to get an arbitrary number of participants
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#45 - Improve UCAP fetcher to get an arbitrary number of participants
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#44 - Interpolate bad channels using `pyprep`
Issue -
State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision
#43 - Fix automatically generated name of GitHub releases
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#42 - Fix automatic GitHub release names
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#41 - Adjust GitHub action to include automatic release notes in release
Pull Request -
State: closed - Opened by alexenge over 2 years ago
#40 - Create automatic release notes from future pull request
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: documentation
#39 - Improve input argument names
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: breaking-change
#38 - Make input arguments more consistent
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#37 - Proper documentation
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: documentation
#36 - Improve participant-specific returns in `config`
Pull Request -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#35 - Improve participant-specific returns in `config`
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#34 - Add cluster depth tests and/or ANOVA/LMM-based CBPTs
Issue -
State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision
#33 - Convert log file DFs to dict for config
Pull Request -
State: closed - Opened by alexenge over 2 years ago
#32 - Prettify logging messages
Pull Request -
State: closed - Opened by alexenge over 2 years ago
#31 - Saving config fails when `log_files` are data frames
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#30 - Prettify logging
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#29 - Actually interpolate bad channels
Pull Request -
State: closed - Opened by alexenge over 2 years ago
#28 - Improve default options
Pull Request -
State: closed - Opened by alexenge over 2 years ago
#27 - Bad channels don't actually get interpolated
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#26 - Improve default options
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#25 - Return `time` in s, not ms
Pull Request -
State: closed - Opened by alexenge over 2 years ago
#24 - Always return `time` in seconds, not milliseconds
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: bug
#23 - Return + save pipeline config (input arguments, bad channels, rejected epochs)
Pull Request -
State: closed - Opened by alexenge over 2 years ago
#22 - Return pipeline `config` as dict and save to JSON
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#21 - Compute mixed models with `pymer4` and/or `bambi`
Issue -
State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision
#20 - Add BIDS interface
Issue -
State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision
#19 - Detect channels based on standard errors
Issue -
State: closed - Opened by alexenge over 2 years ago
Labels: enhancement
#18 - Fail when channels in `components` or `components_tfr` are not in the data
Issue -
State: closed - Opened by alexenge over 2 years ago
- 1 comment
Labels: bug
#16 - Make reports more informative
Issue -
State: open - Opened by alexenge over 2 years ago
Labels: enhancement
#14 - Add tests
Issue -
State: open - Opened by alexenge over 2 years ago
Labels: enhancement
#11 - Automatically detect missing EEG trials
Issue -
State: closed - Opened by alexenge almost 3 years ago
#10 - Add command line interface + Docker image
Issue -
State: open - Opened by alexenge almost 3 years ago
Labels: enhancement, long-term vision
#8 - Add different input file types
Issue -
State: closed - Opened by alexenge almost 3 years ago
- 2 comments
Labels: enhancement, good first issue
#3 - Add boilerplate
Issue -
State: open - Opened by alexenge almost 3 years ago
Labels: enhancement