Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / alexenge/hu-neuro-pipeline issues and pull requests

#85 - Fix error when trying to interpolate bad channels from dict or list

Pull Request - State: closed - Opened by alexenge almost 2 years ago
Labels: bug

#84 - Interpolating channels from dict/list is broken

Issue - State: closed - Opened by alexenge almost 2 years ago
Labels: bug

#83 - Overwrite pre-existing files in `clean_dir` (as with `output_dir`, `epoch_dir`, etc.)

Pull Request - State: closed - Opened by alexenge about 2 years ago
Labels: bug

#82 - Pipeline doesn't override existing cleaned (raw) datasets

Issue - State: closed - Opened by alexenge about 2 years ago
Labels: bug

#80 - Pipeline fails when specifying multiple `.vhdr` files per participant

Issue - State: closed - Opened by alexenge about 2 years ago
Labels: bug

#79 - Allow specifying multiple EEG datasets (i.e., `.vhdr` files) per participant

Pull Request - State: closed - Opened by alexenge about 2 years ago
Labels: enhancement

#78 - Provide functionality to automatically combine raw data sets

Issue - State: closed - Opened by alexenge about 2 years ago
Labels: enhancement

#77 - Rename baseline correction arguments and allow skipping baseline correction

Pull Request - State: closed - Opened by alexenge about 2 years ago
Labels: enhancement, breaking-change

#76 - Make it possible to skip baseline correction

Issue - State: closed - Opened by alexenge about 2 years ago
Labels: enhancement

#75 - Config entry `rejected_epochs` is now called `auto_rejected_epochs`

Pull Request - State: closed - Opened by alexenge about 2 years ago
Labels: bug

#74 - Make output of `reject_peak_to_peak` more consistent

Issue - State: closed - Opened by alexenge about 2 years ago
Labels: bug

#73 - Allow specifying the number of extracted ICA components

Pull Request - State: closed - Opened by alexenge about 2 years ago
Labels: enhancement, breaking-change

#72 - Allow specifying the number of extracted components for ICA

Issue - State: closed - Opened by alexenge about 2 years ago - 1 comment
Labels: enhancement

#71 - Use unfiltered (rather than filtered) epochs for TFR when setting `tfr_subtract_evoked`

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#70 - Allow choosing the mode of TFR baseline correction (e.g., percent, ratio, z-score)

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#68 - Users should be able to choose the divisive baseline mode for TFR

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#67 - Apply additional full-epoch baseline correction for unbiased single-trial power

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#66 - Current single trial pre-stimulus baseline for TFR leads to biased results

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#65 - Adjust default wavelet frequencies (4, 40, 1) and number cycles (2, 20, 0.5)

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#64 - Adjust default frequencies and cycles for TFR

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug, breaking-change

#63 - Match epochs also in the case of missing *log file* trials

Issue - State: open - Opened by alexenge over 2 years ago
Labels: enhancement

#62 - Enable overwriting of existing `.fif` files for evokeds

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#61 - `.fif` files for evokeds are not saved with `overwrite=True`

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#60 - Missing EEG epochs should go into the config

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#58 - Make GitHub action run only for *published* GitHub release

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#57 - Only published GitHub releases should trigger action

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#56 - Fix error when trying to create QC reports while skipping ocular correction

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#55 - Creation of HTML reports fails if `ocular_correction=None`

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#54 - Link workshop materials and UCAP example as sub-modules

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: documentation

#53 - Add workshop and UCAP example repos as submodules

Issue - State: closed - Opened by alexenge over 2 years ago - 1 comment
Labels: documentation

#52 - Improve R examples for `components`, using `list()` instead of `c()`

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: documentation

#51 - R examples don't work for single components

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: documentation

#50 - Naturalsort input files (e.g., log files) if directories are provided

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#49 - Naturalsort files if directories are provided

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#48 - Make UCAP fetcher accept float as input for `n_participants`

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#47 - UCAP fetcher doesn't accept float inputs for `n_participants`

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#46 - Improve UCAP fetcher to get an arbitrary number of participants

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#45 - Improve UCAP fetcher to get an arbitrary number of participants

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#44 - Interpolate bad channels using `pyprep`

Issue - State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision

#43 - Fix automatically generated name of GitHub releases

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#42 - Fix automatic GitHub release names

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#41 - Adjust GitHub action to include automatic release notes in release

Pull Request - State: closed - Opened by alexenge over 2 years ago

#40 - Create automatic release notes from future pull request

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: documentation

#39 - Improve input argument names

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: breaking-change

#38 - Make input arguments more consistent

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#37 - Proper documentation

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: documentation

#36 - Improve participant-specific returns in `config`

Pull Request - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#35 - Improve participant-specific returns in `config`

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#34 - Add cluster depth tests and/or ANOVA/LMM-based CBPTs

Issue - State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision

#33 - Convert log file DFs to dict for config

Pull Request - State: closed - Opened by alexenge over 2 years ago

#32 - Prettify logging messages

Pull Request - State: closed - Opened by alexenge over 2 years ago

#31 - Saving config fails when `log_files` are data frames

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#30 - Prettify logging

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#29 - Actually interpolate bad channels

Pull Request - State: closed - Opened by alexenge over 2 years ago

#28 - Improve default options

Pull Request - State: closed - Opened by alexenge over 2 years ago

#27 - Bad channels don't actually get interpolated

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#26 - Improve default options

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#25 - Return `time` in s, not ms

Pull Request - State: closed - Opened by alexenge over 2 years ago

#24 - Always return `time` in seconds, not milliseconds

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: bug

#22 - Return pipeline `config` as dict and save to JSON

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#21 - Compute mixed models with `pymer4` and/or `bambi`

Issue - State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision

#20 - Add BIDS interface

Issue - State: open - Opened by alexenge over 2 years ago
Labels: enhancement, long-term vision

#19 - Detect channels based on standard errors

Issue - State: closed - Opened by alexenge over 2 years ago
Labels: enhancement

#18 - Fail when channels in `components` or `components_tfr` are not in the data

Issue - State: closed - Opened by alexenge over 2 years ago - 1 comment
Labels: bug

#16 - Make reports more informative

Issue - State: open - Opened by alexenge over 2 years ago
Labels: enhancement

#14 - Add tests

Issue - State: open - Opened by alexenge over 2 years ago
Labels: enhancement

#11 - Automatically detect missing EEG trials

Issue - State: closed - Opened by alexenge almost 3 years ago

#10 - Add command line interface + Docker image

Issue - State: open - Opened by alexenge almost 3 years ago
Labels: enhancement, long-term vision

#8 - Add different input file types

Issue - State: closed - Opened by alexenge almost 3 years ago - 2 comments
Labels: enhancement, good first issue

#3 - Add boilerplate

Issue - State: open - Opened by alexenge almost 3 years ago
Labels: enhancement