Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / alexenge/hu-neuro-pipeline issues and pull requests
#186 - Fix example page titles
Pull Request -
State: closed - Opened by alexenge 11 days ago
Labels: documentation
#185 - Titles of example pages in docs are messed up
Issue -
State: closed - Opened by alexenge 12 days ago
Labels: bug, documentation
#184 - Trigger package build only on push to `main` branch
Issue -
State: closed - Opened by alexenge 12 days ago
Labels: bug
#183 - Re-structure docs with separate sections for Python and R users
Pull Request -
State: closed - Opened by alexenge 12 days ago
Labels: documentation
#182 - Re-structure docs with separate sub-sections for Python vs. R users
Issue -
State: closed - Opened by alexenge 12 days ago
Labels: documentation
#181 - Automatically generate separate doc pages for Python vs. R syntax input arguments
Pull Request -
State: closed - Opened by alexenge 12 days ago
Labels: documentation
#180 - Update GitHub action workflow due to deprecated action version
Pull Request -
State: closed - Opened by alexenge 13 days ago
Labels: bug
#179 - Build package action fails on GitHub due to deprecated action version
Issue -
State: closed - Opened by alexenge 13 days ago
Labels: bug
#178 - Automatically render separate doc pages with Python vs. R input syntax
Issue -
State: closed - Opened by alexenge about 1 month ago
Labels: documentation
#177 - Implement RIDE algorithm for speech artefact correction
Issue -
State: open - Opened by kirstenstark 3 months ago
Labels: documentation, enhancement
#176 - Add MSEC/BESA matrices to ERP CORE download function
Issue -
State: open - Opened by alexenge 4 months ago
Labels: enhancement
#175 - Use PyPI's new "trusted publisher" for authentication instead of API token
Pull Request -
State: closed - Opened by alexenge 6 months ago
Labels: bug
#174 - Use PyPI's "trusted publishers" for publishing instead of API token
Issue -
State: closed - Opened by alexenge 6 months ago
Labels: bug
#173 - Improve bits of text in the UCAP example
Pull Request -
State: closed - Opened by alexenge 6 months ago
Labels: documentation
#172 - Warn but continue when epochs selected for averaging are empty (e.g., all epochs were rejected)
Pull Request -
State: closed - Opened by alexenge 7 months ago
Labels: bug
#171 - Warn but continue if epochs selected with `average_by` is empty
Issue -
State: closed - Opened by alexenge 7 months ago
Labels: bug
#170 - Consider adding hu-neuro-pipeline to NITRC
Issue -
State: open - Opened by arnodelorme 9 months ago
- 1 comment
Labels: documentation
#169 - Small improvements to the installation instructions
Pull Request -
State: closed - Opened by alexenge 9 months ago
Labels: documentation
#168 - Epochs that are `'TOO_SHORT'` to fit into the recording get dropped from epochs and log files with a warning
Pull Request -
State: closed - Opened by alexenge 10 months ago
Labels: bug, enhancement
#167 - Integer coercion warning now only shows up if `ica_n_components` isn't `int` already
Pull Request -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#166 - Epochs dropped as `'TOO_SHORT'` or `'NO_DATA'` cause log file merging errors
Issue -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#165 - Coercion warning about `ica_n_components` is displayed even if it is already `int`
Issue -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#164 - Fix error when trying to save `Path`/`range` to config
Pull Request -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#163 - Error when saving special types (`Path`, `range`) to config
Issue -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#162 - Fix error when `.csv` log file is passed as a `pathlib.Path`
Pull Request -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#161 - Error when `log_file` is a `.csv` file as a `pathlib.Path`
Issue -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#160 - Ensure that `components['roi']` is always a list
Pull Request -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#159 - Fix error when `components['roi']` is not a nested list
Issue -
State: closed - Opened by alexenge 10 months ago
Labels: bug
#158 - Support `pathlib.Path` objects as input and output directories
Pull Request -
State: closed - Opened by alexenge 10 months ago
Labels: enhancement
#157 - Allow list-like types (not just list) for some input arguments
Pull Request -
State: closed - Opened by alexenge 10 months ago
Labels: enhancement
#156 - Allow more list-like types instead of just lists for some input arguments
Issue -
State: closed - Opened by alexenge 10 months ago
Labels: enhancement
#155 - Support `pathlib.Path` for input files and output directories
Issue -
State: closed - Opened by alexenge 10 months ago
Labels: enhancement, good first issue
#154 - Fix import error with new MNE version 1.6.0
Pull Request -
State: closed - Opened by alexenge 11 months ago
Labels: bug
#153 - Importing the pipeline errors with MNE version 1.6.0
Issue -
State: closed - Opened by alexenge 11 months ago
Labels: bug
#152 - Fix some issues in the docs (wrong input arguments, remove tables of content)
Pull Request -
State: closed - Opened by alexenge 11 months ago
Labels: documentation
#151 - Fix missing manifest files that broke the dataset fetchers
Pull Request -
State: closed - Opened by alexenge 11 months ago
Labels: bug
#150 - Make sure manifest files are installed with the package for fetchers
Issue -
State: closed - Opened by alexenge 11 months ago
Labels: bug
#149 - Improve dataset fetchers (offline mode, `path` argument, custom list of participants)
Pull Request -
State: closed - Opened by alexenge 11 months ago
Labels: enhancement
#148 - MNE 1.5 has re-introduced the error when providing non-existing triggers
Issue -
State: open - Opened by alexenge 12 months ago
- 1 comment
Labels: bug
#147 - Change order of preprocessing steps to follow Steve Luck's suggestions
Issue -
State: open - Opened by alexenge 12 months ago
- 1 comment
Labels: breaking-change
#146 - Add input argument `ref_channels` for custom re-referencing (`'average'` remains the default)
Pull Request -
State: closed - Opened by alexenge 12 months ago
Labels: enhancement
#145 - Improve dataset fetchers
Issue -
State: closed - Opened by alexenge 12 months ago
Labels: enhancement
#144 - Let users choose data path as an argument in UCAP / ERP CORE dataset fetchers
Issue -
State: closed - Opened by alexenge 12 months ago
- 1 comment
Labels: enhancement
#143 - Keep audio and pulse channels that are not in the montage as "misc" type
Pull Request -
State: closed - Opened by kirstenstark 12 months ago
- 1 comment
Labels: enhancement
#142 - Allow including/excluding trigger combinations instead of individual triggers
Issue -
State: open - Opened by alexenge about 1 year ago
Labels: enhancement
#141 - Allow users to keep channels that are not in the montage
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: enhancement, good first issue
#140 - Fix bad epoch rejection for epochs that already have bad epoch markers (e.g., `NO_DATA`)
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: bug
#139 - Epoch rejection fails if markers are present in the drop log of the epochs (e.g., `NO_DATA`)
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: bug
#138 - Make sure that automatic matching via `triggers_column` works for non-BrainVision data
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: bug
#137 - Make sure that automatic matching via `triggers_column` works for non-BrainVision data
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: bug
#136 - Change default for `ica_n_components` from `0.99` (i.e., 99% explained variance) to `None` (all components, usually number of channels minus one)
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: breaking-change
#135 - Allow setting `ica_n_components` to `None` and make it the new default
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: breaking-change
#134 - Move documentation source files into new `doc/source/` sub-directory
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation
#133 - Move source files for documentation into separate `source/` sub-directory
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation
#132 - Switch to MyST-NB (instead of nbsphinx) for rendering doc examples
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation
#131 - Fix bug so that Read the Docs will render the examples again
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation
#130 - Add ERP CORE example (processing N400 data in Python) to docs
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation
#129 - Rename functions for getting sample datasets (now `datasets.get_ucap()` and `datasets.get_erpcore()`)
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: bug
#128 - Re-factor dataset fetchers
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: enhancement
#127 - Support processing of non-BrainVision / non-Abdel Rahman Lab data (e.g., ERP CORE data)
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: enhancement
#126 - Add ERP CORE example to docs
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation
#125 - Support different raw EEG input file types beyond BrainVision (Note: Input argument `vhdr_files` is now called `raw_files`!)
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: enhancement, breaking-change
#124 - Support processing of ERP CORE data
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: enhancement
#123 - Fix content of tables in Usage / Input arguments
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation, good first issue
#122 - Add functions to download sample data from the ERP CORE dataset
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: enhancement
#121 - Add fetcher for the ERP CORE dataset(s)
Issue -
State: closed - Opened by alexenge about 1 year ago
Labels: enhancement
#120 - Improve documentation
Issue -
State: open - Opened by alexenge about 1 year ago
Labels: documentation
#119 - Create new documentation with Sphinx, hosted on ReadTheDocs (https://hu-neuro-pipeline.readthedocs.io)
Pull Request -
State: closed - Opened by alexenge about 1 year ago
Labels: documentation
#118 - Use `pick` method instead of `pick_channels` as it is now an MNE legacy function
Issue -
State: open - Opened by alexenge over 1 year ago
Labels: bug, good first issue
#117 - In README, let users check if they already have (Mini)conda installed
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: documentation, good first issue
#116 - Fix group level error
Pull Request -
State: closed - Opened by kirstenstark over 1 year ago
Labels: bug
#115 - Error at group level (grand averaging)
Issue -
State: closed - Opened by kirstenstark over 1 year ago
#114 - Allow options for EEG re-referencing
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement, good first issue
#113 - Update lab name and website in README and elsewhere
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: documentation
#112 - Update lab name and website in README and elsewhere
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: documentation
#111 - Create evokeds with `average_by` based on arbitrary log file query strings (instead of log file column names)
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: breaking-change
#110 - No results object created when `output_dir` has files from previous runs
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#109 - Fix description of temporary *high-pass* filter prior to ICA
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: documentation
#108 - Description of (temporary) filter before ICA is wrong
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: documentation
#107 - Create evokeds based on custom filters
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement
#106 - Add instructions for how to install development version from GitHub in README
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement
#105 - Add instructions for installing development version from GitHub
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: documentation
#104 - When writing epochs, the epoch trigger column is now called `"event_id"` instead of `"condition"`
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: breaking-change
#103 - When writing epochs, triggers shouldn't go into a column called `"condition"`
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#102 - Write `none` for `NaN` (= invalid JSON) to config file when passing data frames as `log_files`
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#101 - When passing data frames as `log_files` , config file may contain `NaN`s, which are invalid in JSON
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#100 - Don't convert mastoid/auricular channels to misc type
Issue -
State: open - Opened by alexenge over 1 year ago
- 1 comment
Labels: bug
#99 - Hide some unimportant messages from the console
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#98 - Prettify console output
Issue -
State: closed - Opened by alexenge over 1 year ago
#97 - Allow more recent pandas versions than 1.4.0 in dependencies
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#96 - Allow more recent pandas versions
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#94 - Add Python version to `package_versions` in config file
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement
#93 - Add Python version to config
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement
#92 - Write package versions (pipeline, MNE, ...) to config file for future reference
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement
#91 - Write package versions to config
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement
#90 - Write `auto_missing_epochs` to config when magically detecting missing EEG trials via `triggers_column`
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: enhancement
#89 - Display warning (not error) when one of the `triggers` is not in the data
Pull Request -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#88 - Error when one of the `triggers` is not in the data
Issue -
State: closed - Opened by alexenge over 1 year ago
Labels: bug
#87 - Fix error when only a single bad channel is provided (instead of a list)
Pull Request -
State: closed - Opened by alexenge almost 2 years ago
Labels: bug
#86 - Error when interpolating a single channel per subject in R
Issue -
State: closed - Opened by alexenge almost 2 years ago
Labels: bug