Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / alexenge/hu-neuro-pipeline issues and pull requests

#186 - Fix example page titles

Pull Request - State: closed - Opened by alexenge 11 days ago
Labels: documentation

#185 - Titles of example pages in docs are messed up

Issue - State: closed - Opened by alexenge 12 days ago
Labels: bug, documentation

#184 - Trigger package build only on push to `main` branch

Issue - State: closed - Opened by alexenge 12 days ago
Labels: bug

#183 - Re-structure docs with separate sections for Python and R users

Pull Request - State: closed - Opened by alexenge 12 days ago
Labels: documentation

#182 - Re-structure docs with separate sub-sections for Python vs. R users

Issue - State: closed - Opened by alexenge 12 days ago
Labels: documentation

#181 - Automatically generate separate doc pages for Python vs. R syntax input arguments

Pull Request - State: closed - Opened by alexenge 12 days ago
Labels: documentation

#180 - Update GitHub action workflow due to deprecated action version

Pull Request - State: closed - Opened by alexenge 13 days ago
Labels: bug

#179 - Build package action fails on GitHub due to deprecated action version

Issue - State: closed - Opened by alexenge 13 days ago
Labels: bug

#178 - Automatically render separate doc pages with Python vs. R input syntax

Issue - State: closed - Opened by alexenge about 1 month ago
Labels: documentation

#177 - Implement RIDE algorithm for speech artefact correction

Issue - State: open - Opened by kirstenstark 3 months ago
Labels: documentation, enhancement

#176 - Add MSEC/BESA matrices to ERP CORE download function

Issue - State: open - Opened by alexenge 4 months ago
Labels: enhancement

#175 - Use PyPI's new "trusted publisher" for authentication instead of API token

Pull Request - State: closed - Opened by alexenge 6 months ago
Labels: bug

#174 - Use PyPI's "trusted publishers" for publishing instead of API token

Issue - State: closed - Opened by alexenge 6 months ago
Labels: bug

#173 - Improve bits of text in the UCAP example

Pull Request - State: closed - Opened by alexenge 6 months ago
Labels: documentation

#171 - Warn but continue if epochs selected with `average_by` is empty

Issue - State: closed - Opened by alexenge 7 months ago
Labels: bug

#170 - Consider adding hu-neuro-pipeline to NITRC

Issue - State: open - Opened by arnodelorme 9 months ago - 1 comment
Labels: documentation

#169 - Small improvements to the installation instructions

Pull Request - State: closed - Opened by alexenge 9 months ago
Labels: documentation

#167 - Integer coercion warning now only shows up if `ica_n_components` isn't `int` already

Pull Request - State: closed - Opened by alexenge 10 months ago
Labels: bug

#164 - Fix error when trying to save `Path`/`range` to config

Pull Request - State: closed - Opened by alexenge 10 months ago
Labels: bug

#163 - Error when saving special types (`Path`, `range`) to config

Issue - State: closed - Opened by alexenge 10 months ago
Labels: bug

#162 - Fix error when `.csv` log file is passed as a `pathlib.Path`

Pull Request - State: closed - Opened by alexenge 10 months ago
Labels: bug

#161 - Error when `log_file` is a `.csv` file as a `pathlib.Path`

Issue - State: closed - Opened by alexenge 10 months ago
Labels: bug

#160 - Ensure that `components['roi']` is always a list

Pull Request - State: closed - Opened by alexenge 10 months ago
Labels: bug

#159 - Fix error when `components['roi']` is not a nested list

Issue - State: closed - Opened by alexenge 10 months ago
Labels: bug

#158 - Support `pathlib.Path` objects as input and output directories

Pull Request - State: closed - Opened by alexenge 10 months ago
Labels: enhancement

#157 - Allow list-like types (not just list) for some input arguments

Pull Request - State: closed - Opened by alexenge 10 months ago
Labels: enhancement

#156 - Allow more list-like types instead of just lists for some input arguments

Issue - State: closed - Opened by alexenge 10 months ago
Labels: enhancement

#155 - Support `pathlib.Path` for input files and output directories

Issue - State: closed - Opened by alexenge 10 months ago
Labels: enhancement, good first issue

#154 - Fix import error with new MNE version 1.6.0

Pull Request - State: closed - Opened by alexenge 11 months ago
Labels: bug

#153 - Importing the pipeline errors with MNE version 1.6.0

Issue - State: closed - Opened by alexenge 11 months ago
Labels: bug

#152 - Fix some issues in the docs (wrong input arguments, remove tables of content)

Pull Request - State: closed - Opened by alexenge 11 months ago
Labels: documentation

#151 - Fix missing manifest files that broke the dataset fetchers

Pull Request - State: closed - Opened by alexenge 11 months ago
Labels: bug

#150 - Make sure manifest files are installed with the package for fetchers

Issue - State: closed - Opened by alexenge 11 months ago
Labels: bug

#149 - Improve dataset fetchers (offline mode, `path` argument, custom list of participants)

Pull Request - State: closed - Opened by alexenge 11 months ago
Labels: enhancement

#148 - MNE 1.5 has re-introduced the error when providing non-existing triggers

Issue - State: open - Opened by alexenge 12 months ago - 1 comment
Labels: bug

#147 - Change order of preprocessing steps to follow Steve Luck's suggestions

Issue - State: open - Opened by alexenge 12 months ago - 1 comment
Labels: breaking-change

#146 - Add input argument `ref_channels` for custom re-referencing (`'average'` remains the default)

Pull Request - State: closed - Opened by alexenge 12 months ago
Labels: enhancement

#145 - Improve dataset fetchers

Issue - State: closed - Opened by alexenge 12 months ago
Labels: enhancement

#144 - Let users choose data path as an argument in UCAP / ERP CORE dataset fetchers

Issue - State: closed - Opened by alexenge 12 months ago - 1 comment
Labels: enhancement

#143 - Keep audio and pulse channels that are not in the montage as "misc" type

Pull Request - State: closed - Opened by kirstenstark 12 months ago - 1 comment
Labels: enhancement

#142 - Allow including/excluding trigger combinations instead of individual triggers

Issue - State: open - Opened by alexenge about 1 year ago
Labels: enhancement

#141 - Allow users to keep channels that are not in the montage

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: enhancement, good first issue

#140 - Fix bad epoch rejection for epochs that already have bad epoch markers (e.g., `NO_DATA`)

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: bug

#138 - Make sure that automatic matching via `triggers_column` works for non-BrainVision data

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: bug

#135 - Allow setting `ica_n_components` to `None` and make it the new default

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: breaking-change

#134 - Move documentation source files into new `doc/source/` sub-directory

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: documentation

#133 - Move source files for documentation into separate `source/` sub-directory

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: documentation

#132 - Switch to MyST-NB (instead of nbsphinx) for rendering doc examples

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: documentation

#131 - Fix bug so that Read the Docs will render the examples again

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: documentation

#130 - Add ERP CORE example (processing N400 data in Python) to docs

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: documentation

#128 - Re-factor dataset fetchers

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: enhancement

#127 - Support processing of non-BrainVision / non-Abdel Rahman Lab data (e.g., ERP CORE data)

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: enhancement

#126 - Add ERP CORE example to docs

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: documentation

#125 - Support different raw EEG input file types beyond BrainVision (Note: Input argument `vhdr_files` is now called `raw_files`!)

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: enhancement, breaking-change

#124 - Support processing of ERP CORE data

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: enhancement

#123 - Fix content of tables in Usage / Input arguments

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: documentation, good first issue

#122 - Add functions to download sample data from the ERP CORE dataset

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: enhancement

#121 - Add fetcher for the ERP CORE dataset(s)

Issue - State: closed - Opened by alexenge about 1 year ago
Labels: enhancement

#120 - Improve documentation

Issue - State: open - Opened by alexenge about 1 year ago
Labels: documentation

#119 - Create new documentation with Sphinx, hosted on ReadTheDocs (https://hu-neuro-pipeline.readthedocs.io)

Pull Request - State: closed - Opened by alexenge about 1 year ago
Labels: documentation

#118 - Use `pick` method instead of `pick_channels` as it is now an MNE legacy function

Issue - State: open - Opened by alexenge over 1 year ago
Labels: bug, good first issue

#117 - In README, let users check if they already have (Mini)conda installed

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: documentation, good first issue

#116 - Fix group level error

Pull Request - State: closed - Opened by kirstenstark over 1 year ago
Labels: bug

#115 - Error at group level (grand averaging)

Issue - State: closed - Opened by kirstenstark over 1 year ago

#114 - Allow options for EEG re-referencing

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: enhancement, good first issue

#113 - Update lab name and website in README and elsewhere

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: documentation

#112 - Update lab name and website in README and elsewhere

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: documentation

#110 - No results object created when `output_dir` has files from previous runs

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: bug

#109 - Fix description of temporary *high-pass* filter prior to ICA

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: documentation

#108 - Description of (temporary) filter before ICA is wrong

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: documentation

#107 - Create evokeds based on custom filters

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: enhancement

#106 - Add instructions for how to install development version from GitHub in README

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: enhancement

#105 - Add instructions for installing development version from GitHub

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: documentation

#104 - When writing epochs, the epoch trigger column is now called `"event_id"` instead of `"condition"`

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: breaking-change

#103 - When writing epochs, triggers shouldn't go into a column called `"condition"`

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: bug

#100 - Don't convert mastoid/auricular channels to misc type

Issue - State: open - Opened by alexenge over 1 year ago - 1 comment
Labels: bug

#99 - Hide some unimportant messages from the console

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: bug

#98 - Prettify console output

Issue - State: closed - Opened by alexenge over 1 year ago

#97 - Allow more recent pandas versions than 1.4.0 in dependencies

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: bug

#96 - Allow more recent pandas versions

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: bug

#94 - Add Python version to `package_versions` in config file

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: enhancement

#93 - Add Python version to config

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: enhancement

#92 - Write package versions (pipeline, MNE, ...) to config file for future reference

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: enhancement

#91 - Write package versions to config

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: enhancement

#89 - Display warning (not error) when one of the `triggers` is not in the data

Pull Request - State: closed - Opened by alexenge over 1 year ago
Labels: bug

#88 - Error when one of the `triggers` is not in the data

Issue - State: closed - Opened by alexenge over 1 year ago
Labels: bug

#87 - Fix error when only a single bad channel is provided (instead of a list)

Pull Request - State: closed - Opened by alexenge almost 2 years ago
Labels: bug

#86 - Error when interpolating a single channel per subject in R

Issue - State: closed - Opened by alexenge almost 2 years ago
Labels: bug