Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / alejoe91/MEArec issues and pull requests

#146 - Packaging upgrade

Pull Request - State: open - Opened by alejoe91 over 1 year ago

#145 - Propagate filter order and add filter mode

Pull Request - State: closed - Opened by alejoe91 over 1 year ago

#144 - Move to SpikeInterface?

Issue - State: open - Opened by bendichter over 1 year ago - 7 comments

#143 - control over amplitude distribution

Issue - State: open - Opened by bendichter over 1 year ago - 1 comment

#142 - filtering order bug & enhancement advice

Issue - State: closed - Opened by ZoeChen96 over 1 year ago - 2 comments

#141 - Fix resampling timing

Pull Request - State: closed - Opened by alejoe91 over 1 year ago

#139 - Fix little bug

Pull Request - State: closed - Opened by DradeAW over 1 year ago

#138 - Add n_sel+=1 for unknown cell-type selection

Pull Request - State: closed - Opened by alejoe91 over 1 year ago

#137 - Missing 'n_sel += 1' in tools.py for drifting non-overlap-pairs case

Issue - State: closed - Opened by BigBroBob2 over 1 year ago - 2 comments

#136 - use bin center to retreive unit motion

Pull Request - State: closed - Opened by samuelgarcia over 1 year ago

#135 - Fix filter: use chunk replacement instead of addition

Pull Request - State: closed - Opened by alejoe91 over 1 year ago
Labels: bug

#134 - Fix template generation when different params are used

Pull Request - State: closed - Opened by alejoe91 over 1 year ago
Labels: bug

#133 - Numpy error

Issue - State: closed - Opened by YawendeLumicks over 1 year ago - 1 comment

#132 - filtering issue in MEArec: the filtered signal seems added on the non-filtered signal

Issue - State: closed - Opened by ZoeChen96 over 1 year ago - 7 comments
Labels: bug

#131 - Frequency problem in template & recording

Issue - State: closed - Opened by ZoeChen96 over 1 year ago - 11 comments

#130 - custom Allen cell model template wrong data format available

Issue - State: closed - Opened by Yawende over 1 year ago - 1 comment

#129 - add option to control the drift linear gradient

Pull Request - State: closed - Opened by samuelgarcia almost 2 years ago - 5 comments

#128 - External drifts

Pull Request - State: closed - Opened by alejoe91 almost 2 years ago

#127 - Receive spike event times per electrode

Issue - State: closed - Opened by Yawende almost 2 years ago - 2 comments

#126 - Add check_eap_shape parameter for template-generation

Pull Request - State: closed - Opened by alejoe91 almost 2 years ago

#125 - More complete fix

Pull Request - State: closed - Opened by yger almost 2 years ago

#124 - Fix non-rigid indices

Pull Request - State: closed - Opened by alejoe91 almost 2 years ago - 1 comment

#123 - fix for parallel template

Pull Request - State: closed - Opened by yger almost 2 years ago - 2 comments

#122 - Add extract_units_drift_vector

Pull Request - State: closed - Opened by samuelgarcia almost 2 years ago - 1 comment

#121 - Help with drifts

Issue - State: closed - Opened by yger about 2 years ago - 11 comments

#120 - Fix

Pull Request - State: closed - Opened by yger about 2 years ago - 1 comment

#119 - Generation with a given list of template_ids

Issue - State: closed - Opened by yger about 2 years ago - 1 comment

#118 - Convolution computed in float for more precision

Pull Request - State: closed - Opened by DradeAW about 2 years ago

#117 - templates could not be selected

Issue - State: closed - Opened by u963593d about 2 years ago - 1 comment

#116 - Remove decimate for instability

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#115 - Deprecation warning py3.10

Issue - State: closed - Opened by yger over 2 years ago - 1 comment

#114 - From distutils to packaging

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#113 - DeprecationWarning

Issue - State: closed - Opened by yger over 2 years ago - 1 comment

#112 - Prevent two cells of the same type to be nearby

Issue - State: closed - Opened by yger over 2 years ago - 1 comment

#111 - Typo

Pull Request - State: closed - Opened by DradeAW over 2 years ago

#110 - Additional smoothing step for templates

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#109 - Insertion of the templates

Issue - State: closed - Opened by yger over 2 years ago

#108 - Correct parameter name for min_amp

Pull Request - State: closed - Opened by DradeAW over 2 years ago

#107 - Python exe and default chunk to 10s

Pull Request - State: closed - Opened by alejoe91 over 2 years ago - 1 comment

#106 - `gen_templates` fails in python and command line

Issue - State: closed - Opened by DradeAW over 2 years ago - 3 comments

#105 - Add gain parameter and verbosity in tempgen

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#104 - Implement ADC bit depth and LSB concepts

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#103 - Disable display for subprocess and fix tests

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#102 - Fix issue with int dtype

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#101 - Disable display for NEURON

Pull Request - State: closed - Opened by alejoe91 over 2 years ago

#100 - Fix integer dtype

Pull Request - State: closed - Opened by alejoe91 over 2 years ago - 1 comment

#99 - Persistent Template Noise with SciPy>=1.8

Issue - State: closed - Opened by Alexis-Melot almost 3 years ago - 8 comments

#98 - mr.gen_templates() --> FileNotFoundError

Issue - State: closed - Opened by chrihoni almost 3 years ago - 14 comments

#97 - Refactoring on drift : possibility to handle non-rigid

Pull Request - State: closed - Opened by samuelgarcia almost 3 years ago - 7 comments

#96 - New model for bursting

Issue - State: open - Opened by sreedhar-kumar almost 3 years ago
Labels: enhancement

#95 - Pre-generate random positions and add beta distr for x-dimension

Pull Request - State: closed - Opened by alejoe91 almost 3 years ago

#94 - Improve rnd seed management and save dates in file

Pull Request - State: closed - Opened by alejoe91 almost 3 years ago

#93 - Add timeout/max_iterations and force resolve relative to absolute paths

Pull Request - State: closed - Opened by LuighiV about 3 years ago - 3 comments

#92 - Consider resolve to absolute paths for cell_model_folder

Issue - State: closed - Opened by LuighiV about 3 years ago

#91 - Add a timeout to finding spikes above noise level

Issue - State: closed - Opened by LuighiV about 3 years ago - 1 comment

#90 - Relax dependency on h5py 2.10

Pull Request - State: closed - Opened by alejoe91 over 3 years ago

#89 - Any way to remove jitter?

Issue - State: closed - Opened by yuhanhaharat over 3 years ago - 2 comments

#88 - Template Generation Error for Extracellular simulation

Issue - State: closed - Opened by yuhanhaharat over 3 years ago - 13 comments

#87 - Remove the close that trigger various bugs.

Pull Request - State: closed - Opened by samuelgarcia over 3 years ago

#86 - Allow users to specify bursting params for each unit separately

Pull Request - State: closed - Opened by alejoe91 over 3 years ago

#85 - Updates for LFPy 2.2

Pull Request - State: closed - Opened by alejoe91 over 3 years ago

#83 - Generation updates

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#82 - Update config files with mearec version

Pull Request - State: closed - Opened by alejoe91 almost 4 years ago

#81 - Update to latest NEURON version

Issue - State: closed - Opened by alejoe91 almost 4 years ago - 2 comments

#80 - Fix dependency on old h5py version 2.10.0

Issue - State: closed - Opened by mahlzahn almost 4 years ago - 4 comments

#79 - Rebuild mearec on probeinterface

Issue - State: open - Opened by samuelgarcia almost 4 years ago
Labels: enhancement

#78 - Force h5py version to 2.10.0

Pull Request - State: closed - Opened by alejoe91 about 4 years ago - 4 comments

#77 - transpose recordings and spike_trace

Pull Request - State: closed - Opened by samuelgarcia about 4 years ago - 2 comments
Labels: very urgent!!!

#76 - transpose RecordingGenerator.recordings and RecordingGenerator.spike_trace

Issue - State: closed - Opened by samuelgarcia about 4 years ago - 2 comments

#75 - Added original templates

Pull Request - State: closed - Opened by alejoe91 about 4 years ago - 2 comments

#74 - Pathlib

Pull Request - State: closed - Opened by alejoe91 about 4 years ago

#73 - Speed up spike trains modifications for synchrony rate

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 2 comments

#72 - Update LFPy version and MEA handling

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#71 - Update LFPy version and MEA handling

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#70 - Properly set max_burst_duration param

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#69 - Docs update

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#68 - Figure updates clean

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#67 - Updates for figures

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#66 - Various updates

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#65 - New padding

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#64 - Padding

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#63 - Transpose recordings, remove h5, parallel filter in chunks, one chunk duration

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 1 comment

#62 - Seed list and spike indices instead of spike_matrix

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#61 - Fix travis

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#60 - joblib and memmap

Pull Request - State: closed - Opened by samuelgarcia over 4 years ago - 6 comments

#59 - Remove quantities

Issue - State: closed - Opened by alejoe91 over 4 years ago - 1 comment

#58 - Tmp files

Pull Request - State: closed - Opened by alejoe91 over 4 years ago - 2 comments

#57 - Drift update and cleanups

Pull Request - State: closed - Opened by alejoe91 over 4 years ago

#56 - Refactor temp file stuff

Pull Request - State: closed - Opened by samuelgarcia over 4 years ago

#55 - New features

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago

#54 - Notebooks fixes

Pull Request - State: closed - Opened by alejoe91 almost 5 years ago

#50 - incr version

Pull Request - State: closed - Opened by alejoe91 about 5 years ago

#48 - Docs update

Pull Request - State: closed - Opened by alejoe91 about 5 years ago

#42 - Overlapping Spikes in a Channel

Issue - State: closed - Opened by saeidrhm over 5 years ago - 1 comment

#38 - Clean and speed up padding, resampling, and jittering

Pull Request - State: closed - Opened by alejoe91 over 5 years ago - 1 comment

#36 - Limits for template location could be given as radius

Issue - State: open - Opened by alejoe91 over 5 years ago - 5 comments
Labels: enhancement

#32 - Support monotrodes

Issue - State: closed - Opened by alejoe91 over 5 years ago - 1 comment

#20 - Add optional electrode-model

Issue - State: open - Opened by alejoe91 almost 6 years ago - 1 comment
Labels: enhancement