Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / alan-turing-institute/pixelflow issues and pull requests

#69 - Add .npy to the list of recognised mask file types

Issue - State: open - Opened by IFenton 6 months ago

#68 - Updating branch

Pull Request - State: closed - Opened by IFenton 6 months ago

#67 - Pixelflow JOSS paper

Issue - State: open - Opened by evangeline-corcoran 6 months ago
Labels: coworking

#66 - Meeting with BAS team on Pixelflow/Scivision

Issue - State: closed - Opened by evangeline-corcoran 7 months ago - 1 comment
Labels: coworking

#65 - README fix and expanded mask types

Pull Request - State: closed - Opened by jameswilsenach 8 months ago

#64 - Add citation file

Pull Request - State: closed - Opened by IFenton 9 months ago

#63 - Create a citation file for pixelflow

Issue - State: closed - Opened by IFenton 9 months ago

#62 - Ben vectors

Pull Request - State: closed - Opened by lupinthief 9 months ago

#61 - Pass file path / directory instead of array

Issue - State: open - Opened by lupinthief 9 months ago - 1 comment

#60 - Pixelflow Sea Ice Use Case Demo

Issue - State: open - Opened by evangeline-corcoran 9 months ago
Labels: enhancement

#59 - NLP/ chatGPT interface for zero-code interface

Issue - State: open - Opened by lupinthief 9 months ago

#59 - NLP/ chatGPT interface for zero-code interface

Issue - State: open - Opened by lupinthief 9 months ago

#58 - Provide shape descriptors as outputs

Issue - State: open - Opened by evangeline-corcoran 10 months ago - 1 comment

#58 - Provide shape descriptors as outputs

Issue - State: open - Opened by evangeline-corcoran 10 months ago - 1 comment

#57 - Retain spatial metadata

Issue - State: open - Opened by evangeline-corcoran 10 months ago
Labels: enhancement

#57 - Retain spatial metadata

Issue - State: open - Opened by evangeline-corcoran 10 months ago
Labels: enhancement

#56 - Implement a tomogram segmentation as part of pixelflow.

Issue - State: open - Opened by crangelsmith 10 months ago - 1 comment

#55 - Add warning if spacing is used with custom functions

Pull Request - State: closed - Opened by IFenton 11 months ago

#55 - Add warning if spacing is used with custom functions

Pull Request - State: closed - Opened by IFenton 11 months ago

#54 - Adding details to the README.md

Pull Request - State: closed - Opened by IFenton 12 months ago

#53 - Adding testing to pixelflow

Pull Request - State: closed - Opened by IFenton 12 months ago - 1 comment

#52 - Apply btrack/pixel flow to marine data use case

Issue - State: open - Opened by asthanameghna about 1 year ago

#51 - Add Readme for prospective enrichment students

Issue - State: open - Opened by scotthosking about 1 year ago

#50 - Creating a summary function

Pull Request - State: open - Opened by IFenton about 1 year ago

#49 - Add tests to pixelflow

Issue - State: closed - Opened by IFenton about 1 year ago

#48 - Adding a lower limit to the scikit-image dependency

Pull Request - State: closed - Opened by IFenton about 1 year ago - 1 comment

#47 - Finalise pixelflow seed demos

Issue - State: closed - Opened by evangeline-corcoran about 1 year ago - 1 comment

#46 - Pin scikit-image dependency

Issue - State: closed - Opened by IFenton about 1 year ago

#45 - Adding documentation for pixelflow

Pull Request - State: closed - Opened by IFenton about 1 year ago

#44 - Coordinate data

Issue - State: open - Opened by IFenton about 1 year ago

#43 - [DEFIANT] Merge latest model branch to main after PR

Issue - State: closed - Opened by louisavz about 1 year ago - 1 comment

#41 - Summary functions

Issue - State: open - Opened by IFenton about 1 year ago - 1 comment

#40 - Handle masks with no objects

Pull Request - State: closed - Opened by IFenton about 1 year ago

#39 - Consider alternative output formats

Issue - State: open - Opened by IFenton about 1 year ago

#38 - Write documentation

Issue - State: closed - Opened by IFenton about 1 year ago

#37 - Error when running pixelflow for a mask with no labels

Issue - State: closed - Opened by evangeline-corcoran about 1 year ago - 7 comments
Labels: bug

#36 - Output intensity_image for each label

Issue - State: closed - Opened by evangeline-corcoran about 1 year ago - 5 comments
Labels: enhancement

#35 - Set scale for measurements in features table

Issue - State: closed - Opened by evangeline-corcoran about 1 year ago - 1 comment
Labels: enhancement

#34 - Adding functionality for spatial data

Pull Request - State: closed - Opened by IFenton about 1 year ago - 2 comments

#33 - Allow pixelflow to map pytorch (or other ML framework) models to image data

Issue - State: open - Opened by quantumjot about 1 year ago - 2 comments
Labels: enhancement

#32 - Adding a label option

Pull Request - State: closed - Opened by IFenton over 1 year ago

#31 - Add label option

Issue - State: closed - Opened by IFenton over 1 year ago - 1 comment

#30 - Outputting the bounding boxes in the simulated image

Pull Request - State: closed - Opened by IFenton over 1 year ago - 1 comment

#29 - Incorporate geospatial metadata into pixelflow

Issue - State: closed - Opened by IFenton over 1 year ago - 1 comment

#28 - Fix Numba Deprecation Warning

Issue - State: closed - Opened by IFenton over 1 year ago - 1 comment

#26 - Adding additional input types

Pull Request - State: closed - Opened by IFenton over 1 year ago

#25 - Bug fix efd

Pull Request - State: closed - Opened by quantumjot over 1 year ago

#24 - EFD fails if mask is all True

Issue - State: closed - Opened by quantumjot over 1 year ago
Labels: bug

#23 - Add pytest workflow

Pull Request - State: closed - Opened by quantumjot over 1 year ago

#22 - Consider leveraging dask for larger nD datasets

Issue - State: open - Opened by quantumjot over 1 year ago - 1 comment
Labels: idea

#21 - Output segmented images

Pull Request - State: closed - Opened by IFenton over 1 year ago

#20 - Add EFD custom function to pixelflow

Issue - State: closed - Opened by quantumjot over 1 year ago

#19 - Add an example builtin shape analysis function

Pull Request - State: closed - Opened by quantumjot over 1 year ago - 1 comment

#18 - Add pre-commit and linting

Pull Request - State: closed - Opened by quantumjot over 1 year ago

#17 - Adding functionality to handle ZYX datasets

Pull Request - State: closed - Opened by IFenton over 1 year ago

#16 - Add CI workflow

Issue - State: closed - Opened by quantumjot over 1 year ago

#15 - Add automated testing as part of CI

Issue - State: closed - Opened by quantumjot over 1 year ago

#13 - Output segmented images of each label using regionprops.intensity_image

Issue - State: closed - Opened by evangeline-corcoran over 1 year ago - 3 comments
Labels: enhancement

#12 - Add data checks to pixelflow

Issue - State: open - Opened by IFenton over 1 year ago

#11 - Adding functionality to PixelflowResult to output a .csv file

Pull Request - State: closed - Opened by IFenton over 1 year ago

#10 - Add missing dependencies to pyproject.toml and correct typo

Pull Request - State: closed - Opened by IFenton over 1 year ago

#9 - Update README.md to add logo

Pull Request - State: closed - Opened by quantumjot over 1 year ago - 3 comments
Labels: documentation

#8 - Include regionprops_3D metrics in default features

Issue - State: closed - Opened by evangeline-corcoran over 1 year ago - 4 comments
Labels: enhancement

#7 - Allow easier output of 'features' table to csv?

Issue - State: closed - Opened by evangeline-corcoran over 1 year ago
Labels: enhancement

#6 - Gather requirements from Scivision community

Issue - State: open - Opened by ots22 over 1 year ago - 9 comments
Labels: coworking

#5 - Library functions to include

Issue - State: open - Opened by ots22 over 1 year ago - 1 comment
Labels: coworking

#4 - Use pixelflow for two realistic use-cases

Issue - State: open - Opened by ots22 over 1 year ago - 3 comments
Labels: coworking

#3 - Image data supported by `pixelflow`

Issue - State: open - Opened by ots22 over 1 year ago - 2 comments

#2 - Types supported by `pixelflow` function

Issue - State: open - Opened by ots22 over 1 year ago - 2 comments

#1 - Initial commit

Pull Request - State: closed - Opened by quantumjot over 1 year ago