Ecosyste.ms: Issues

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GitHub / alan-turing-institute/empiarreader issues and pull requests

#64 - Fixing pkg versions and version bump

Pull Request - State: open - Opened by JatGreer 3 months ago

#62 - Jgreer/joss submission

Pull Request - State: closed - Opened by JatGreer 7 months ago

#61 - Paper updates

Pull Request - State: closed - Opened by JatGreer 7 months ago

#60 - Jgreer/joss submission

Pull Request - State: closed - Opened by JatGreer 8 months ago

#59 - Update paper.md

Pull Request - State: closed - Opened by quantumjot 10 months ago - 1 comment
Labels: paper

#58 - Added sphinx documentation

Pull Request - State: closed - Opened by mooniean 10 months ago - 4 comments

#57 - Added python publishing on pypi when release workflow

Pull Request - State: closed - Opened by mooniean 10 months ago - 2 comments

#56 - Updated README with background/statement of need

Pull Request - State: closed - Opened by mooniean 10 months ago - 3 comments

#55 - Updating Docstrings

Pull Request - State: closed - Opened by mooniean 11 months ago - 2 comments

#54 - docstrings for utilities

Pull Request - State: closed - Opened by JatGreer 11 months ago - 1 comment

#53 - Jgreer/ftp download

Pull Request - State: closed - Opened by JatGreer 12 months ago - 1 comment

#52 - update cmd line download on README and add to docs

Issue - State: closed - Opened by JatGreer 12 months ago - 2 comments

#51 - Include CZI data portal as a possible datasource?

Issue - State: open - Opened by quantumjot 12 months ago

#50 - Information about documentation in docs

Issue - State: open - Opened by ots22 12 months ago

#49 - Added updated poetry lock

Pull Request - State: closed - Opened by mooniean about 1 year ago - 3 comments
Labels: bug

#48 - Notebook example

Pull Request - State: closed - Opened by mooniean about 1 year ago - 3 comments
Labels: enhancement

#47 - [BUG] poetry install doesn't work with latest version of poetry

Issue - State: closed - Opened by mooniean about 1 year ago
Labels: bug

#46 - Setup documentation builds (sphinx and readthedocs)

Pull Request - State: closed - Opened by ots22 about 1 year ago

#45 - Documentation pages (sphinx/readthedocs)

Issue - State: closed - Opened by ots22 about 1 year ago

#44 - Setup documentation builds (sphinx and readthedocs)

Pull Request - State: closed - Opened by ots22 about 1 year ago

#43 - Jgreer/readme instructions

Pull Request - State: closed - Opened by JatGreer about 1 year ago

#42 - Removed intake cache style download via cmd line placeholder

Pull Request - State: closed - Opened by JatGreer about 1 year ago

#41 - What is the `empiarreader intake` command all about? (Joel)

Issue - State: closed - Opened by JatGreer about 1 year ago - 1 comment

#40 - Setup sphinx

Issue - State: closed - Opened by ots22 about 1 year ago

#39 - Add GH workflow for PyPI release

Issue - State: closed - Opened by ots22 about 1 year ago

#38 - Update installation instructions

Issue - State: closed - Opened by ots22 about 1 year ago

#37 - README instructions for download, search commands

Issue - State: closed - Opened by ots22 about 1 year ago

#36 - 'caching' for the python downloader

Issue - State: open - Opened by mooniean about 1 year ago - 1 comment

#35 - Pre-commit workflow not working same as repo pre-commit

Issue - State: closed - Opened by JatGreer over 1 year ago

#34 - Write integration tests for command line

Issue - State: closed - Opened by JatGreer over 1 year ago

#33 - Jgreer/cli

Pull Request - State: closed - Opened by JatGreer over 1 year ago - 2 comments

#32 - Add 'simple' wildcard vs regular expression argument

Issue - State: closed - Opened by ots22 over 1 year ago - 1 comment

#31 - Expose contents of entry XML file as python object

Issue - State: open - Opened by ots22 over 1 year ago
Labels: enhancement, good first issue

#29 - Ensure 'build' job runs on pull requests

Pull Request - State: closed - Opened by ots22 over 1 year ago - 1 comment

#28 - Download only metadata

Issue - State: open - Opened by jmp1985 over 1 year ago
Labels: enhancement, good first issue

#27 - Change poetry master to main

Pull Request - State: closed - Opened by jmp1985 over 1 year ago

#26 - Ensure all headers are included in result returned from mrc driver

Issue - State: open - Opened by ots22 over 1 year ago - 1 comment

#25 - Update project structure

Pull Request - State: closed - Opened by ots22 over 1 year ago - 2 comments

#24 - Actions workflow for pytest

Pull Request - State: closed - Opened by ots22 over 1 year ago

#23 - Add pre-commit hook config

Pull Request - State: closed - Opened by ots22 over 1 year ago

#22 - Some EMPIAR entries break

Issue - State: closed - Opened by ots22 over 1 year ago - 2 comments

#21 - Add .pre-commit-config.yaml?

Issue - State: closed - Opened by JatGreer over 1 year ago

#20 - Updating poetry/pyproject dependencies

Pull Request - State: closed - Opened by JatGreer over 1 year ago - 2 comments

#19 - Add EMPIARReader to pypi

Issue - State: closed - Opened by mooniean over 1 year ago - 1 comment

#18 - Write/check docstrings

Issue - State: closed - Opened by ots22 over 1 year ago - 1 comment

#17 - Add GH workflow for readthedocs

Issue - State: closed - Opened by mooniean over 1 year ago

#16 - Fix poetry dependencies

Issue - State: closed - Opened by mooniean over 1 year ago - 1 comment

#15 - Make example notebook

Issue - State: closed - Opened by mooniean over 1 year ago - 1 comment

#14 - Load only file whose filenames match a pattern

Pull Request - State: closed - Opened by ots22 almost 2 years ago - 1 comment

#13 - Add 'pattern' option to EmpiarSource

Issue - State: closed - Opened by ots22 almost 2 years ago

#12 - Create LICENSE

Pull Request - State: closed - Opened by ots22 almost 2 years ago

#11 - Add a license

Issue - State: closed - Opened by quantumjot almost 2 years ago

#10 - Make napari plugin

Issue - State: open - Opened by mooniean about 2 years ago - 1 comment
Labels: enhancement

#9 - documentation updates

Pull Request - State: closed - Opened by mooniean about 2 years ago - 4 comments

#8 - Add feature to read particles when present as mrcs

Issue - State: open - Opened by mooniean about 2 years ago
Labels: low priority

#7 - Handle relative paths in starfile (referring to images)

Issue - State: open - Opened by ots22 about 2 years ago

#6 - Add star path to yaml and verify yaml structure

Issue - State: open - Opened by mooniean about 2 years ago

#5 - Return mrc and starfile data in a single data structure

Issue - State: open - Opened by ots22 about 2 years ago - 1 comment

#4 - Add download to disk option

Issue - State: closed - Opened by mooniean about 2 years ago - 2 comments

#3 - Change starfile to gemmi

Issue - State: open - Opened by mooniean about 2 years ago - 1 comment

#2 - Write documentation

Issue - State: closed - Opened by mooniean about 2 years ago - 1 comment
Labels: documentation

#1 - Structure as Intake driver

Pull Request - State: closed - Opened by ots22 about 2 years ago