Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / alan-turing-institute/affinity-vae issues and pull requests
#282 - Post processing notebook
Pull Request -
State: open - Opened by marjanfamili 9 months ago
- 1 comment
#281 - Add tests for the pipeline and the model containing Gaussian splat decoder
Issue -
State: open - Opened by marjanfamili 9 months ago
#280 - Differentiable Gaussian splat decoder
Pull Request -
State: open - Opened by marjanfamili 9 months ago
- 1 comment
#279 - [WIP] Pytorch lightning
Pull Request -
State: open - Opened by crangelsmith 9 months ago
#278 - Data and model paralelisation for optimal training
Issue -
State: open - Opened by crangelsmith 9 months ago
#277 - Flexible installation
Pull Request -
State: closed - Opened by crangelsmith 9 months ago
#276 - Eval flag in input file not registered
Issue -
State: open - Opened by marjanfamili 10 months ago
Labels: bug
#275 - Error when pose_vis_class is not specified
Issue -
State: open - Opened by marjanfamili 10 months ago
Labels: bug
#274 - Affinity error in evaluation mode
Issue -
State: open - Opened by marjanfamili 10 months ago
Labels: bug
#274 - Affinity error in evaluation mode
Issue -
State: open - Opened by marjanfamili 10 months ago
Labels: bug
#273 - new_out produces error if file full path not declared
Issue -
State: open - Opened by marjanfamili 10 months ago
Labels: bug
#272 - Type hints
Pull Request -
State: closed - Opened by crangelsmith 10 months ago
#272 - Type hints
Pull Request -
State: open - Opened by crangelsmith 10 months ago
#271 - Updated toml file for different systems
Issue -
State: closed - Opened by crangelsmith 10 months ago
#270 - Napari for pose dimentions > 3
Issue -
State: open - Opened by crangelsmith 10 months ago
#269 - Add more comprehensive unit tests
Pull Request -
State: closed - Opened by jolaem 10 months ago
- 1 comment
#268 - Per-class pose visualisation fails when `VIS_POSE_CLASS` is `None`
Issue -
State: closed - Opened by jolaem 10 months ago
Labels: bug
#267 - Evaluation should check if data dimension is compatible with model
Issue -
State: open - Opened by jolaem 10 months ago
Labels: bug
#266 - Evaluation incorrectly picks out pose dim from model name
Issue -
State: open - Opened by jolaem 10 months ago
- 1 comment
Labels: bug
#265 - New interpolation plot fails with pose=0
Issue -
State: closed - Opened by jolaem 10 months ago
Labels: bug
#264 - Napari widget
Pull Request -
State: closed - Opened by crangelsmith 10 months ago
- 1 comment
#263 - Typo in Tutorial (---new_out)
Issue -
State: closed - Opened by moi-taiga 10 months ago
- 1 comment
#262 - bug when vis_all : False
Issue -
State: open - Opened by marjanfamili 10 months ago
- 4 comments
#261 - Umap embedding fails due to uninitialised variable
Issue -
State: closed - Opened by jolaem 10 months ago
- 3 comments
Labels: bug
#260 - remove batch processing from visualisation functions
Issue -
State: closed - Opened by marjanfamili 10 months ago
#259 - removed grid processing from pose_class_disentanglement_plot
Pull Request -
State: closed - Opened by marjanfamili 10 months ago
- 1 comment
#258 - Napari plugin
Issue -
State: closed - Opened by crangelsmith 10 months ago
#257 - MNIST tutorial
Pull Request -
State: closed - Opened by crangelsmith 10 months ago
- 4 comments
#256 - specific frequencies to overwrite freq_all
Issue -
State: closed - Opened by marjanfamili 11 months ago
Labels: enhancement
#255 - Second interpolation plot
Pull Request -
State: closed - Opened by marjanfamili 11 months ago
- 3 comments
#254 - Update README.md
Pull Request -
State: closed - Opened by NikJur 11 months ago
#253 - Abstract model
Pull Request -
State: closed - Opened by crangelsmith 11 months ago
- 1 comment
#252 - Unify models
Pull Request -
State: closed - Opened by jolaem 11 months ago
#251 - Pydantic config
Pull Request -
State: closed - Opened by crangelsmith 11 months ago
- 2 comments
#250 - Warnings
Issue -
State: open - Opened by crangelsmith 11 months ago
#249 - Move installation to toml based.
Pull Request -
State: closed - Opened by crangelsmith 11 months ago
- 2 comments
#248 - Reduce logging
Pull Request -
State: closed - Opened by crangelsmith 11 months ago
- 3 comments
#247 - Affinity matrix plot has white space
Issue -
State: open - Opened by marjanfamili 11 months ago
Labels: bug
#246 - Visualisations don't always check if plots directory exists
Issue -
State: closed - Opened by jolaem 11 months ago
Labels: bug
#245 - test
Pull Request -
State: closed - Opened by crangelsmith 11 months ago
#244 - Consolidate embedding code
Issue -
State: open - Opened by jolaem 11 months ago
#243 - Add pose space visualisation
Pull Request -
State: closed - Opened by jolaem 11 months ago
#242 - Add model summary to logging info
Pull Request -
State: closed - Opened by jolaem 11 months ago
#241 - Update disentanglement interpolation
Pull Request -
State: open - Opened by jolaem 11 months ago
#240 - Abstract encoder - decoder
Issue -
State: closed - Opened by crangelsmith 12 months ago
#239 - Implement type hints
Issue -
State: closed - Opened by crangelsmith 12 months ago
#238 - Move to toml based setup
Issue -
State: closed - Opened by crangelsmith 12 months ago
#236 - selection of encodings for pose and latent interpolation
Issue -
State: open - Opened by marjanfamili 12 months ago
#235 - Fix failing default pose class disentanglement settings
Pull Request -
State: closed - Opened by jolaem 12 months ago
#234 - Per-class pose visualisation fails when using default value from config
Issue -
State: closed - Opened by jolaem 12 months ago
Labels: bug
#233 - Config accepts parameters that do not exist
Issue -
State: closed - Opened by jolaem 12 months ago
- 2 comments
Labels: good first issue
#232 - Accuracy for KNN fails with smaller number of samples
Issue -
State: open - Opened by jolaem 12 months ago
Labels: bug, good first issue
#231 - Enable 2D input in model B and associated tests
Pull Request -
State: closed - Opened by jolaem 12 months ago
#230 - Fix per-class pose visualisation and associated tests
Pull Request -
State: closed - Opened by jolaem 12 months ago
#229 - [Draft] 228 fix per class pose disentanglement
Pull Request -
State: closed - Opened by jolaem 12 months ago
- 1 comment
#228 - Pose class disentanglement plot not working
Issue -
State: closed - Opened by jolaem 12 months ago
- 3 comments
Labels: bug
#227 - Adapt model B to 2D data
Pull Request -
State: closed - Opened by jolaem 12 months ago
- 2 comments
#226 - 2D image preview in dynamic plots fix
Pull Request -
State: closed - Opened by jolaem 12 months ago
- 4 comments
#225 - 2D image preview in dynamic plots is incorrectly summed
Issue -
State: closed - Opened by jolaem 12 months ago
Labels: bug
#224 - Fix for unconditional rescale
Pull Request -
State: closed - Opened by jolaem 12 months ago
#223 - Channels hyperparameter is hardcoded in model A
Issue -
State: closed - Opened by jolaem 12 months ago
- 1 comment
Labels: bug
#222 - Update loss to use long indices
Pull Request -
State: closed - Opened by quantumjot 12 months ago
- 1 comment
Labels: bug
#221 - Can we sort the F1 scores in the plot?
Issue -
State: open - Opened by jolaem 12 months ago
#220 - Rescale always applied and causing issues
Issue -
State: closed - Opened by crangelsmith 12 months ago
Labels: bug
#219 - Early stopping
Pull Request -
State: open - Opened by crangelsmith almost 1 year ago
- 1 comment
#218 - Example dataset to run affinity VAE
Issue -
State: closed - Opened by crangelsmith about 1 year ago
- 1 comment
Labels: documentation
#217 - Create a directory for configs
Pull Request -
State: closed - Opened by jolaem about 1 year ago
#216 - Can we suppress this NN classifier warning?
Issue -
State: open - Opened by jolaem about 1 year ago
#215 - Add rescale option to transforms
Pull Request -
State: closed - Opened by jolaem about 1 year ago
#214 - Add gamma to text feedback
Pull Request -
State: closed - Opened by jolaem about 1 year ago
#213 - Disabling VIS_CON flag
Pull Request -
State: closed - Opened by jolaem about 1 year ago
#212 - Metadata file independent of dynamic plots
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
#211 - Pose per class
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
#210 - Kld loss
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
- 3 comments
#209 - Configurable choice for latent space visualisation
Issue -
State: open - Opened by crangelsmith about 1 year ago
#208 - F1 bugfix
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
#207 - F1 eval fix
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
- 1 comment
#206 - Warning repeatedly appearing in output
Issue -
State: open - Opened by marjanfamili about 1 year ago
#205 - F1 underestimated in evaluation
Issue -
State: closed - Opened by crangelsmith about 1 year ago
Labels: bug
#204 - Fix bug in batch print and clean up execution feedback.
Pull Request -
State: closed - Opened by jolaem about 1 year ago
#203 - Bug in logging where batch iterator is outside the batch loop
Issue -
State: closed - Opened by jolaem about 1 year ago
#202 - Correct kld loss
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
- 1 comment
#201 - Consider using pydantic for configuration
Issue -
State: closed - Opened by quantumjot about 1 year ago
#200 - Error in Evaluation mode when using .npy files
Issue -
State: closed - Opened by marjanfamili about 1 year ago
- 2 comments
Labels: bug
#199 - Revert "Embedding colours"
Pull Request -
State: closed - Opened by marjanfamili about 1 year ago
#198 - Pose interpolation for each class
Pull Request -
State: closed - Opened by marjanfamili about 1 year ago
- 1 comment
#197 - Embedding colours
Pull Request -
State: closed - Opened by marjanfamili about 1 year ago
#196 - Bugfix
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
#195 - Bug fixes
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
#194 - Embedding and reconstruction plots broken
Issue -
State: closed - Opened by crangelsmith about 1 year ago
Labels: bug
#193 - Reduce logging + CI fix
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
#192 - Out-of-memory error
Issue -
State: closed - Opened by crangelsmith about 1 year ago
Labels: bug
#191 - Logging is slowing down run
Issue -
State: closed - Opened by crangelsmith about 1 year ago
#190 - Create subtomo
Pull Request -
State: closed - Opened by marjanfamili about 1 year ago
- 4 comments
#189 - Update .gitignore to exclude DS_Store
Pull Request -
State: closed - Opened by quantumjot about 1 year ago
#188 - Mixture between prints and logging
Issue -
State: closed - Opened by crangelsmith about 1 year ago
- 2 comments
#187 - Refactoring run.py + new_out option + logging
Pull Request -
State: closed - Opened by crangelsmith about 1 year ago
#186 - added tensorboard
Pull Request -
State: closed - Opened by chris-soelistyo about 1 year ago
#185 - Add a preprocessing script to augment mrc files.
Pull Request -
State: closed - Opened by jolaem about 1 year ago
#184 - Add preprocessing augment mrcs script
Issue -
State: closed - Opened by jolaem about 1 year ago