akhanf/snakebids issues and pull requests

#247 - Update dependencies

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: maintenance

#246 - Versioned `bids` functions

Issue - State: open - Opened by pvandyken about 2 years ago
Labels: enhancement

#245 - Customizable `bids` function based on spec file

Issue - State: open - Opened by pvandyken about 2 years ago - 5 comments
Labels: enhancement

#244 - `BidsDataset` advanced component selection

Issue - State: open - Opened by pvandyken about 2 years ago - 1 comment
Labels: enhancement

#243 - Implement `BidsPartialComponent`

Issue - State: closed - Opened by pvandyken about 2 years ago
Labels: enhancement

#242 - `BidsDataset.expand()`

Issue - State: open - Opened by pvandyken about 2 years ago
Labels: enhancement

#241 - `BidsDataset.filter`

Issue - State: open - Opened by pvandyken about 2 years ago - 1 comment
Labels: enhancement

#240 - Allow multiple entity selections in `BidsComponent` attributes

Issue - State: closed - Opened by pvandyken about 2 years ago
Labels: enhancement

#239 - Transition to breaking `BidsDataset` API

Issue - State: open - Opened by pvandyken about 2 years ago
Labels: breaking

#238 - Update documentation to consistently use new `BidsDataset` syntax

Issue - State: closed - Opened by pvandyken about 2 years ago - 1 comment
Labels: documentation

#237 - Deprecate `BidsDataset` attributes slated for breaking changes

Issue - State: closed - Opened by pvandyken about 2 years ago
Labels: enhancement, deprecation

#236 - Breaking `BidsDataset` API Changes

Issue - State: open - Opened by pvandyken about 2 years ago
Labels: breaking

#235 - Support `extension` in `bids()` function

Issue - State: closed - Opened by pvandyken about 2 years ago - 1 comment
Labels: bug

#234 - Ensure bids() is called with identifying entities

Pull Request - State: closed - Opened by pvandyken about 2 years ago - 1 comment
Labels: bug

#233 - Expose BIDSLayout in BidsDataset

Pull Request - State: closed - Opened by pvandyken about 2 years ago - 2 comments
Labels: enhancement

#232 - Extending filtering to meta-data

Issue - State: open - Opened by Bradley-Karat about 2 years ago - 1 comment
Labels: enhancement

#231 - [FIX] change error message when no input found

Pull Request - State: closed - Opened by Remi-Gau about 2 years ago - 1 comment
Labels: bug

#230 - How to deal with missing session data

Issue - State: closed - Opened by ljhearne about 2 years ago - 3 comments

#229 - Use entity-specific parsers

Pull Request - State: closed - Opened by pvandyken about 2 years ago - 4 comments
Labels: bug

#228 - Block components with same names in dataset init

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: bug

#227 - are datatype as a wildcard possible?

Issue - State: closed - Opened by Remi-Gau about 2 years ago - 2 comments

#226 - Update some outdated references to BidsInputs

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: documentation

#225 - Split Dataset and Component models into new file

Pull Request - State: closed - Opened by pvandyken about 2 years ago - 2 comments
Labels: maintenance

#224 - Skip Bids Indexing when `custom_paths` specified

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: maintenance

#223 - how to access the layout of a dataset?

Issue - State: closed - Opened by Remi-Gau about 2 years ago - 4 comments
Labels: enhancement

#222 - integrate bids validator by default into snake bids

Issue - State: closed - Opened by Remi-Gau about 2 years ago - 5 comments
Labels: enhancement

#221 - add an easy way for user to add a README and dataset_description to their output

Issue - State: open - Opened by Remi-Gau about 2 years ago - 6 comments
Labels: enhancement

#220 - turn a snakebids app into a package

Issue - State: closed - Opened by Remi-Gau about 2 years ago - 1 comment

#219 - Missing `custom_path` when bids_dir invalid should throw error

Issue - State: closed - Opened by pvandyken about 2 years ago
Labels: bug

#218 - Check if BidsDir exists before indexing

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: bug

#217 - Fix docstring type in _get_lists_from_bids

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: documentation

#216 - `participant_label` applies subject filter to every single component

Issue - State: open - Opened by pvandyken about 2 years ago - 1 comment
Labels: bug

#215 - Confusing Log message when no images found

Issue - State: closed - Opened by pvandyken about 2 years ago - 1 comment
Labels: bug

#214 - Update setup-poetry to v4

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: maintenance

#213 - Update github actions

Issue - State: closed - Opened by pvandyken about 2 years ago

#212 - Update auto-assign action version

Pull Request - State: closed - Opened by pvandyken about 2 years ago - 1 comment
Labels: maintenance

#211 - Remove redundant inputs from github actions

Pull Request - State: closed - Opened by pvandyken about 2 years ago
Labels: maintenance

#210 - Transition versioning to dynamic-poetry-versioning

Pull Request - State: closed - Opened by pvandyken about 2 years ago - 3 comments
Labels: maintenance

#208 - Intersection of bids_input lists, and subj_zip_list

Issue - State: closed - Opened by akhanf about 2 years ago - 2 comments

#207 - Poetry Dynamic Versioning

Issue - State: closed - Opened by pvandyken about 2 years ago - 3 comments
Labels: maintenance

#206 - Expose snakemake as a script

Issue - State: closed - Opened by pvandyken about 2 years ago - 2 comments
Labels: enhancement, wontfix

#205 - Saving more provenance information

Issue - State: closed - Opened by pvandyken about 2 years ago - 4 comments

#203 - Allow blank fields in `snakebids create`

Issue - State: closed - Opened by pvandyken over 2 years ago - 1 comment
Labels: enhancement

#202 - `BidsComponent.filter`

Issue - State: closed - Opened by pvandyken over 2 years ago - 1 comment
Labels: enhancement

#201 - `BidsComponent.expand()`

Issue - State: closed - Opened by pvandyken over 2 years ago - 1 comment
Labels: enhancement

#200 - Add support for python 3.11

Pull Request - State: closed - Opened by pvandyken over 2 years ago - 2 comments

#197 - Pretty Print version of BidsDataset

Issue - State: closed - Opened by pvandyken over 2 years ago - 2 comments
Labels: enhancement

#193 - Providing only `datatype` to `bids()` give blank string

Issue - State: closed - Opened by pvandyken over 2 years ago
Labels: bug

#192 - Wildcard Parsing Errors

Issue - State: closed - Opened by pvandyken over 2 years ago - 1 comment
Labels: bug

#187 - `snakebids create` issues compendium

Issue - State: closed - Opened by pvandyken over 2 years ago - 9 comments
Labels: bug

#183 - Fix forced output into occupied directory

Pull Request - State: closed - Opened by pvandyken over 2 years ago
Labels: bug

#182 - Rerunning Apps

Issue - State: open - Opened by pvandyken over 2 years ago - 6 comments
Labels: enhancement

#181 - `BidsDataset.from_iterable()` accepts multiple components with the same name

Issue - State: closed - Opened by pvandyken over 2 years ago
Labels: bug

#180 - `workflow.basedir()` semi-incompatible with new Snakemake provenance behaviour

Issue - State: closed - Opened by pvandyken over 2 years ago - 4 comments
Labels: bug

#171 - moved project_template workflow files to package dir

Pull Request - State: open - Opened by akhanf over 2 years ago - 2 comments
Labels: bug

#170 - template project seems broken

Issue - State: closed - Opened by akhanf over 2 years ago - 4 comments

#169 - Using '-' as bids_dir no longer acceptable

Issue - State: closed - Opened by akhanf over 2 years ago - 3 comments
Labels: bug

#159 - Cryptic error messages when pybids parsing fails

Issue - State: closed - Opened by akhanf almost 3 years ago - 4 comments
Labels: bug

#154 - Assist with dataset.json generation.

Issue - State: open - Opened by tkkuehn almost 3 years ago
Labels: enhancement

#96 - README should be expanded

Issue - State: closed - Opened by pvandyken about 3 years ago
Labels: documentation

#94 - More tests needed for magic arguments

Issue - State: closed - Opened by pvandyken about 3 years ago
Labels: test

#2 - Merge updated test timings

Pull Request - State: open - Opened by github-actions[bot] 8 months ago
Labels: maintenance, skip_changelog

#1 - WIP: minor updates to get working with snakemake>=8.0

Pull Request - State: closed - Opened by akhanf 10 months ago

GitHub / akhanf/snakebids issues and pull requests