Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / aics-int/microscope_automation issues and pull requests

#68 - Remove multi pref

Pull Request - State: closed - Opened by yrkim98 almost 4 years ago

#67 - Bugfix/hide safe area

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#66 - Package ZIP

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#65 - actions/install2

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#64 - actions/install

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#63 - Moved CONTRIBUTING to Overview section

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#62 - bugfix/plot-safe-areas

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#61 - Create daily folder in setup

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#60 - ENH: Make starting instructions more clear

Issue - State: open - Opened by fletchapin almost 4 years ago
Labels: Enhancement

#59 - docs/install

Pull Request - State: closed - Opened by fletchapin almost 4 years ago - 1 comment

#58 - ENH: Make matplotlib movement plot optional

Issue - State: closed - Opened by fletchapin almost 4 years ago - 2 comments
Labels: Enhancement

#57 - BUG: Software Crashes when set_autofocus is True

Issue - State: open - Opened by fletchapin almost 4 years ago
Labels: Bug, Needs Triage

#56 - hotfix/pyinstaller-dependency

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#55 - ENH: Have GH Actions release microscope_automation.zip

Issue - State: closed - Opened by fletchapin almost 4 years ago
Labels: Enhancement

#54 - Feature/installer

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#53 - BUG: y-coordinates flipped compared to physical hardware when plotting safe areas

Issue - State: closed - Opened by fletchapin almost 4 years ago
Labels: Bug

#52 - DOC: Document process to create dummy_tile_positions.czsh

Issue - State: open - Opened by fletchapin almost 4 years ago - 1 comment
Labels: Docs

#51 - ENH: Create GUI which interacts with YAML preferences files

Issue - State: open - Opened by fletchapin almost 4 years ago
Labels: Enhancement

#50 - prefs/manual_test

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#49 - Bugfix/segmentation

Pull Request - State: closed - Opened by fletchapin almost 4 years ago

#48 - BUG: Error when live.czi is open and live mode is requested

Issue - State: open - Opened by fletchapin almost 4 years ago
Labels: Bug, Needs Triage

#47 - Bugfix/write ZEN tiles

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#46 - bugfix/macros

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#45 - refactor/file-structure

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#44 - TEST: Move test functions for ZEN Blue from connect_zen_blue_dummy.py to using pytest mock objects

Issue - State: open - Opened by fletchapin about 4 years ago - 1 comment
Labels: Testing

#43 - REF: Overhaul file structure to better accommodate microservices

Issue - State: closed - Opened by fletchapin about 4 years ago
Labels: Refactor

#42 - BUG: Software crashes if no dummy_tile_positions_zsd1.czsh exists

Issue - State: closed - Opened by wiegraebe about 4 years ago
Labels: Bug

#41 - BUG: Handle missing positions_output_a file

Issue - State: closed - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Bug

#40 - BUG: Allow interactive position picking even if segmentation did not return positions

Issue - State: closed - Opened by wiegraebe about 4 years ago - 2 comments
Labels: Bug, Needs Triage

#39 - BUG: z-position not updated during recovery from crash danger

Issue - State: open - Opened by wiegraebe about 4 years ago
Labels: Bug

#38 - BUG: Handle missing keys in preferences file for macros

Issue - State: closed - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Bug

#37 - BUG: When ZEN software was first started error message "Experiment none does not exist'

Issue - State: open - Opened by wiegraebe about 4 years ago - 2 comments
Labels: Bug, Needs Triage

#36 - ENH: Handle yaml errors in preference files

Issue - State: open - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Enhancement

#35 - BUG: Start position list conversion with 1 instead of 0

Issue - State: closed - Opened by wiegraebe about 4 years ago
Labels: Bug

#34 - BUG: change `xZero` and `yZero` to `x_zero` and `y_zero`

Issue - State: closed - Opened by wiegraebe about 4 years ago
Labels: Bug

#33 - BUG: Handle if image is not two dimensional

Issue - State: closed - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Bug

#32 - BUG: Catch error if image has more than two dimensions

Issue - State: closed - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Bug

#31 - REF: Refactor segment_wells

Issue - State: open - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Refactor

#30 - Logging fixed

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#29 - BUG: If macro is not found app continues without error message

Issue - State: closed - Opened by wiegraebe about 4 years ago - 4 comments
Labels: Bug

#28 - ENH: Allow user messages as experiment in preferences file

Issue - State: open - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Enhancement

#27 - BUG: Missing Daily folder crashes system when trying to save image

Issue - State: closed - Opened by wiegraebe about 4 years ago - 3 comments
Labels: Bug

#26 - ENH: handle "Microscope not ready error" in scan_single_ROI

Issue - State: open - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Enhancement

#25 - REF: Refactor all verbose/non-verbose messages into helper function

Issue - State: open - Opened by wiegraebe about 4 years ago - 1 comment
Labels: Refactor

#24 - Added pywin32 and pinned maximum versions in setup.py

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#23 - DOC: Installation instructions

Issue - State: closed - Opened by fletchapin about 4 years ago
Labels: Docs

#22 - BUG: Software always uses ZEN Blue Dummy

Issue - State: closed - Opened by fletchapin about 4 years ago
Labels: Bug

#21 - BUG: HardwareDoesNotExistError in setup_microscope with ZEN Blue Dummy

Issue - State: open - Opened by fletchapin about 4 years ago - 1 comment
Labels: Bug

#20 - TEST: Microscope connect modules are untested

Issue - State: open - Opened by fletchapin about 4 years ago
Labels: Testing

#19 - ENH: Create installer which handles everything pip installation cannot

Issue - State: closed - Opened by fletchapin about 4 years ago - 1 comment
Labels: Enhancement

#18 - BUG: Pin maximum package versions

Issue - State: closed - Opened by fletchapin about 4 years ago
Labels: Bug

#17 - ENH: Replace os.path library with pathlib

Issue - State: open - Opened by fletchapin about 4 years ago
Labels: Enhancement

#16 - ENH: Reference Object API

Issue - State: open - Opened by fletchapin about 4 years ago
Labels: Enhancement

#15 - TEST: Centricity and Focality Correction on Hardware

Issue - State: open - Opened by fletchapin about 4 years ago
Labels: Testing

#14 - BUG: Logger doesn't do anything

Issue - State: closed - Opened by fletchapin about 4 years ago
Labels: Bug

#13 - Added test coverage, question, and docs issue templates

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#12 - Cast string to int to fix isin() bug

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#11 - tests/microscope_automation

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#10 - hotfix/import-errors

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#9 - Create PyPi Package

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#8 - Python3/microscopeautomation

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#7 - tests/samples-helpers

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#6 - Reset skip_all_tests to False

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#5 - Admin/publish docs

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#4 - python3/samples

Pull Request - State: closed - Opened by fletchapin about 4 years ago

#3 - python3-conversion/hardware

Pull Request - State: closed - Opened by fletchapin over 4 years ago - 2 comments

#2 - feature/python3-conversion

Pull Request - State: closed - Opened by fletchapin over 4 years ago - 1 comment

#1 - admin/cleanup-repo

Pull Request - State: closed - Opened by evamaxfield over 4 years ago