Ecosyste.ms: Issues
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GitHub / agemagician/ProtTrans issues and pull requests
#55 - Loading model prot_t5_xxl_uniref50/Rostlab/prot_t5_xxl_bfd
Issue -
State: closed - Opened by timfraseratg about 3 years ago
- 1 comment
Labels: question
#54 - Generating embeddings in batches
Issue -
State: closed - Opened by Xinxinatg about 3 years ago
- 1 comment
Labels: question
#53 - XLNetTokenizer removes multiple 'X' character in a row.
Issue -
State: closed - Opened by iwyoo about 3 years ago
- 1 comment
Labels: bug
#52 - Using ProtTrans
Issue -
State: closed - Opened by dukkakc about 3 years ago
- 3 comments
Labels: question
#51 - Please help with fine tuning of T5 model
Issue -
State: closed - Opened by yzhang-github-pub about 3 years ago
- 1 comment
Labels: question
#50 - Running the ProtAlbert-TF.ipynb and getting NoneType Object error
Issue -
State: closed - Opened by xinformatics about 3 years ago
- 1 comment
#49 - Details on T5
Issue -
State: closed - Opened by Turakar about 3 years ago
- 2 comments
Labels: question
#48 - Using ProtXLNet for Protein Variant Generation
Issue -
State: closed - Opened by wafaaashraf about 3 years ago
- 1 comment
#47 - Question about using ProtXLNet
Issue -
State: closed - Opened by wafaaashraf about 3 years ago
- 2 comments
#46 - The problem of T5 when Fine-Tuning
Issue -
State: closed - Opened by houzl3416 about 3 years ago
#45 - T5 fine tune memory error
Issue -
State: closed - Opened by sacombs about 3 years ago
- 1 comment
Labels: question
#44 - Strange indexing for ProtT5 embeddings?
Issue -
State: closed - Opened by Turakar over 3 years ago
- 2 comments
Labels: question
#43 - Why not use the Hugginface Hub ELECTRA?
Issue -
State: closed - Opened by Turakar over 3 years ago
- 1 comment
Labels: question
#42 - Which mask token is used in T5 training?
Issue -
State: closed - Opened by StephanHeijl over 3 years ago
- 1 comment
#41 - Should I always convert the rarely occured amino acid token (B O U Z)?
Issue -
State: closed - Opened by wangwwno1 over 3 years ago
- 1 comment
#40 - How to ignore the warning
Issue -
State: closed - Opened by SamieeS over 3 years ago
- 3 comments
Labels: question
#39 - Mask tokens for T5 models
Issue -
State: closed - Opened by joshim5 over 3 years ago
- 1 comment
Labels: question
#38 - Why is the number of proteins used for per-residue prediction different from original NetSurfP-2.0 dataset.
Issue -
State: closed - Opened by hailong23-jin over 3 years ago
- 1 comment
Labels: question
#37 - A suggestion for Fine-Tuning code
Issue -
State: closed - Opened by hailong23-jin over 3 years ago
- 1 comment
Labels: bug
#36 - Question about run ProtTrans in multiproces mode
Issue -
State: closed - Opened by ZeroDesigner over 3 years ago
- 2 comments
Labels: question
#35 - Add performer and reformer model
Issue -
State: closed - Opened by behroozazarkhalili over 3 years ago
- 2 comments
Labels: enhancement
#34 - Fine tuning code might have a small bug (just printing)
Issue -
State: closed - Opened by danpf over 3 years ago
- 1 comment
Labels: bug
#33 - Truncation
Issue -
State: closed - Opened by udibgui over 3 years ago
- 1 comment
Labels: question
#32 - Is batch inference helpful for performance?
Issue -
State: closed - Opened by yzhang-github-pub over 3 years ago
- 2 comments
Labels: question
#31 - masking prediction help
Issue -
State: closed - Opened by danpf over 3 years ago
- 1 comment
Labels: question
#30 - tensorflow.python.framework.errors_impl.ResourceExhaustedError: OOM when allocating tensor with shape[41500,1002,1024] and type float on /job:localhost/replica:0/task:0/device:CPU:0 by allocator cpu [Op:ResourceGather]
Issue -
State: closed - Opened by leiqichn over 3 years ago
- 5 comments
Labels: question
#29 - Where to find code for training prot_bert_bfd?
Issue -
State: closed - Opened by MJimitater over 3 years ago
- 1 comment
Labels: duplicate
#28 - Distilled version?
Issue -
State: closed - Opened by anindabitm over 3 years ago
- 1 comment
Labels: enhancement
#27 - paper figure6A
Issue -
State: closed - Opened by yuanenming over 3 years ago
- 3 comments
Labels: question
#26 - ValueError: The first argument to `Layer.call` must always be passed.
Issue -
State: closed - Opened by Trishna-Chakraborty over 3 years ago
- 1 comment
Labels: bug
#25 - ResourceExhaustedError : OOM when allocating tensor
Issue -
State: closed - Opened by Trishna-Chakraborty over 3 years ago
- 4 comments
Labels: question
#24 - Pooler output - Question
Issue -
State: closed - Opened by anindabitm almost 4 years ago
- 1 comment
Labels: question
#23 - Will the prot_bert or prot_bert_BFD model provide classification support or any other API in the future?
Issue -
State: closed - Opened by shysuen almost 4 years ago
- 1 comment
Labels: question
#22 - Maximum number of sequences_Example
Issue -
State: closed - Opened by sailfish009 almost 4 years ago
- 2 comments
Labels: question
#21 - Default feature length 1024?
Issue -
State: closed - Opened by sailfish009 almost 4 years ago
- 4 comments
Labels: question
#20 - Usage Questions
Issue -
State: closed - Opened by bhavaygg almost 4 years ago
- 1 comment
Labels: question
#19 - Model Freezing
Issue -
State: closed - Opened by wjs20 almost 4 years ago
- 1 comment
Labels: question
#18 - Does prot_bert have Classifier output layer?
Issue -
State: closed - Opened by yzhang-github-pub almost 4 years ago
- 1 comment
Labels: question
#17 - Predicting the properties of bacteria
Issue -
State: closed - Opened by slgero almost 4 years ago
- 4 comments
Labels: question
#16 - Question about input data for ProtBert-FineTuning-Localization.ipynb
Issue -
State: closed - Opened by yzhang-github-pub almost 4 years ago
- 2 comments
Labels: bug
#15 - DefaultCPUAllocator: not enough memory
Issue -
State: closed - Opened by bhavaygg almost 4 years ago
- 1 comment
Labels: question
#14 - Error loading 'pytorch_lightning.metrics.sklearns'
Issue -
State: closed - Opened by yzhang-github-pub almost 4 years ago
- 3 comments
Labels: question
#13 - Replicating a basic Protrans model
Issue -
State: closed - Opened by donal1 almost 4 years ago
- 4 comments
Labels: question
#12 - Predicting protein distance map
Issue -
State: closed - Opened by akirasosa almost 4 years ago
- 2 comments
Labels: community use-case
#11 - Source code of the models
Issue -
State: closed - Opened by hadim almost 4 years ago
- 6 comments
Labels: question
#10 - XLNet produces incorrect output dimensions when there are consecutive X tokens
Issue -
State: closed - Opened by konstin almost 4 years ago
- 2 comments
Labels: bug
#9 - Add more pre-trained models for tensorflow 2
Issue -
State: closed - Opened by deepgradient almost 4 years ago
- 1 comment
Labels: question
#8 - Unsupervised LM fine-tuning
Issue -
State: closed - Opened by fteufel almost 4 years ago
- 3 comments
Labels: question
#7 - Language modeling heads
Issue -
State: closed - Opened by jaekor91 almost 4 years ago
- 4 comments
Labels: question
#6 - Pretrained Model
Issue -
State: closed - Opened by cztay about 4 years ago
- 1 comment
Labels: question
#5 - Is there a correct way to use ProtBert with FillMaskPipeline
Issue -
State: closed - Opened by adsodemelk about 4 years ago
- 2 comments
Labels: question
#4 - Do you have a plan to release the trained models for secondary structure prediction etc.?
Issue -
State: closed - Opened by zzhongzz about 4 years ago
- 4 comments
Labels: question
#3 - Load ProtBert or ProtBert-BFD in TensorFlow
Issue -
State: closed - Opened by JoeRRPhillips about 4 years ago
- 4 comments
Labels: question
#2 - Do you have plan to include reformer in ProtTrans?
Issue -
State: closed - Opened by qwu01 about 4 years ago
- 1 comment
Labels: question
#1 - Dropbox links to model weights and Embeddings not working
Issue -
State: closed - Opened by Gurpreethgnis about 4 years ago
- 1 comment
Labels: bug