Ecosyste.ms: Issues

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GitHub / aestrivex/bctpy issues and pull requests

#129 - Implement bct.kcoreness_centrality_wu

Issue - State: open - Opened by JohannesWiesner 3 months ago

#128 - Release 0.6.1 missing tar.gz on Pipy

Issue - State: open - Opened by liadomide 7 months ago - 1 comment

#127 - NBS parallel

Issue - State: open - Opened by daorse 12 months ago

#126 - NBS covariates

Issue - State: open - Opened by teanijarv about 1 year ago - 1 comment

#124 - Official `bctpy` on `conda-forge`

Issue - State: closed - Opened by synchon about 1 year ago - 7 comments

#123 - Updates

Pull Request - State: closed - Opened by aestrivex over 1 year ago

#122 - Permutation max = 0 at stringent t-thresholds

Issue - State: open - Opened by victoris93 over 1 year ago
Labels: needs investigation

#121 - Parallelize NBS

Pull Request - State: closed - Opened by victoris93 over 1 year ago

#119 - Problem to run bct.modularity_dir with latest numpy

Issue - State: closed - Opened by liadomide over 1 year ago - 1 comment

#118 - Avoid ValueError in bct.modularity_dir with latest numpy version

Pull Request - State: closed - Opened by liadomide over 1 year ago

#117 - Issue with weighted transitivity and clustering coefficient?

Issue - State: open - Opened by CallowBrainProject almost 2 years ago - 1 comment
Labels: needs_input_sample

#116 - Fixed autofix function

Pull Request - State: closed - Opened by JulianKlug almost 2 years ago

#115 - Autofix(): Indexing error

Issue - State: closed - Opened by JulianKlug almost 2 years ago

#114 - No fucntion get_components.py inside module .algorithms?

Issue - State: closed - Opened by faraix almost 2 years ago - 1 comment

#113 - Improve generalizability of partition_distance()

Issue - State: open - Opened by aestrivex almost 2 years ago
Labels: enhancement, low_priority

#112 - Bug fixes and updates in backbone_wu

Pull Request - State: closed - Opened by anaston about 2 years ago

#111 - Does bct.efficiency_wei also work for directed networks?

Issue - State: open - Opened by JohannesWiesner about 2 years ago - 1 comment
Labels: enhancement

#109 - Remove EOL python, add GHA config

Pull Request - State: closed - Opened by clbarnes about 2 years ago

#108 - Update RNG usage with numpy's new interface

Pull Request - State: open - Opened by clbarnes about 2 years ago - 1 comment

#107 - Update `get_rng` to return Generator instances

Issue - State: open - Opened by clbarnes about 2 years ago
Labels: enhancement, low_priority

#106 - Wrong description in `kcoreness_centrality_bu`

Issue - State: closed - Opened by dyhan316 over 2 years ago - 1 comment
Labels: needs investigation

#105 - bug: findwalks's for loop index is wrong at it's onset

Issue - State: closed - Opened by yusaiwen over 2 years ago - 1 comment

#104 - IndexError: index 2278 is out of bounds for axis 0 with size 2278

Issue - State: open - Opened by duzc-Repos almost 3 years ago - 3 comments
Labels: bug, needs_input_sample

#103 - B symmetrization inside if statement in community_louvain

Issue - State: open - Opened by erteich about 3 years ago
Labels: needs investigation

#102 - NBS incorrectly(?) lumps positive and negative effects together

Issue - State: open - Opened by willw1 about 3 years ago
Labels: needs investigation

#101 - bct.randomize_graph_partial_und does not converge?

Issue - State: open - Opened by JohannesWiesner over 3 years ago - 1 comment
Labels: bug, needs_input_sample

#100 - Questions regarding certain centrality measures

Issue - State: open - Opened by BrandonKMLee over 3 years ago
Labels: question

#99 - Network measures at different network density

Issue - State: open - Opened by hellorp1990 over 3 years ago
Labels: question

#98 - module_degree_zscore directed version wrong?

Issue - State: open - Opened by silverbullet1472 over 3 years ago - 1 comment
Labels: needs investigation

#97 - community_louvain issue: BCTParamError: Modularity infinite loop style G

Issue - State: open - Opened by AlvaroDeleglise over 3 years ago - 1 comment
Labels: bug, needs_input_sample

#96 - Bugs in matching index, topological overlap,local efficiency and louvain

Issue - State: open - Opened by hrpereira over 3 years ago
Labels: bug, needs investigation

#95 - name 'rng' is not defined

Issue - State: closed - Opened by pavelwood almost 4 years ago - 3 comments

#94 - Need for a minimal example

Issue - State: open - Opened by sambaPython24 almost 4 years ago - 1 comment
Labels: enhancement, question, low_priority

#93 - Different results modularity_und in this module and in Matlab

Issue - State: closed - Opened by Pavel-IO almost 4 years ago - 2 comments

#92 - Changed L330 from Q[:q] to Q[:q+1]

Pull Request - State: closed - Opened by aksimhal almost 4 years ago

#91 - [invalid]small error in function `charpath`

Issue - State: closed - Opened by hopeful0 almost 4 years ago

#90 - distance_bin yields incorrect result and does not warn if the input array is a matrix

Issue - State: open - Opened by mdarnold1 almost 4 years ago - 1 comment
Labels: bug, needs investigation

#89 - Kernel crash when running bct.adjacency_plot_und

Issue - State: open - Opened by lucindasisk almost 4 years ago - 1 comment
Labels: needs_input_sample

#88 - installed but got an no "module named bctpy" error

Issue - State: closed - Opened by zewangnew over 4 years ago - 1 comment
Labels: duplicate

#87 - Fixed typo in Costantini clustering algorithm

Pull Request - State: closed - Opened by jacobtfisher over 4 years ago

#86 - Typo in edge_betweenness_centrality

Issue - State: closed - Opened by aksimhal over 4 years ago - 4 comments

#85 - Python Package

Issue - State: closed - Opened by AndrewYRevell over 4 years ago
Labels: wontfix

#84 - Incorrect input for np.allclose()

Pull Request - State: closed - Opened by frheault over 4 years ago

#83 - modularity_louvain_und: Modularity Infinite Loop Style C

Issue - State: open - Opened by celinede over 4 years ago - 4 comments
Labels: bug, needs_input_sample

#82 - clustering_coef_wu_sign: mirror 2016 bugfix

Pull Request - State: closed - Opened by jdkent almost 5 years ago

#81 - clustering_coef_wu_sign bug

Issue - State: closed - Opened by jdkent almost 5 years ago - 1 comment

#80 - Problem with generative_model (generative.py)

Issue - State: open - Opened by pedrocklein almost 5 years ago
Labels: bug, needs investigation

#79 - non-broadcast error participation coefficient

Issue - State: closed - Opened by grace-shearrer about 5 years ago - 1 comment
Labels: bug, needs investigation

#78 - change np.all to np.allclose

Pull Request - State: closed - Opened by Pulkit-Khandelwal about 5 years ago

#77 - change np.all to np.allclose?

Issue - State: closed - Opened by Pulkit-Khandelwal about 5 years ago - 3 comments

#76 - null_model_und_sign not supported between instances of 'tuple' and 'int'

Issue - State: closed - Opened by vinferrer about 5 years ago - 5 comments

#75 - Duecredit integration

Pull Request - State: closed - Opened by clbarnes over 5 years ago

#74 - null_model_und_sign casting error

Pull Request - State: closed - Opened by MuriloSchaefer over 5 years ago

#73 - Fix modularity_dir and _und bug

Pull Request - State: closed - Opened by clbarnes over 5 years ago

#72 - Switch from nose to pytest

Pull Request - State: closed - Opened by clbarnes over 5 years ago

#71 - modularity_dir can fail: removing self-loops fixes it

Issue - State: closed - Opened by clbarnes over 5 years ago - 1 comment

#70 - test/build update and random seeds

Pull Request - State: closed - Opened by clbarnes over 5 years ago - 2 comments

#69 - If appropriate, document which version of BCT bctpy targets

Issue - State: open - Opened by clbarnes over 5 years ago
Labels: enhancement

#68 - null_model_*_sign has bugs

Issue - State: closed - Opened by clbarnes over 5 years ago - 1 comment

#67 - Seed argument for functions with RNGs

Issue - State: closed - Opened by clbarnes over 5 years ago - 8 comments

#66 - Need for a new release

Issue - State: closed - Opened by tjiagoM almost 6 years ago - 4 comments

#63 - bct.community_louvain adjmat must not contain negative weights

Issue - State: closed - Opened by vinferrer about 6 years ago - 5 comments

#62 - Update core.py

Pull Request - State: closed - Opened by PedroConst about 6 years ago

#61 - core_periphery_dir

Issue - State: closed - Opened by PedroConst about 6 years ago - 1 comment

#60 - Update centrality.py

Pull Request - State: closed - Opened by mb3152 about 6 years ago

#59 - sparse matrices

Issue - State: open - Opened by mb3152 about 6 years ago - 3 comments
Labels: enhancement, needs investigation

#58 - community_louvain infinite loop

Issue - State: closed - Opened by rob-mccutcheon over 6 years ago - 3 comments

#57 - community_louvain error with negative weights

Issue - State: closed - Opened by rob-mccutcheon over 6 years ago - 1 comment

#56 - Tiny correction to add the default value to the documentation.

Issue - State: closed - Opened by acb14js over 6 years ago - 1 comment

#55 - install on windows machine

Issue - State: closed - Opened by GergelyTuri almost 7 years ago - 1 comment

#54 - use np.power in utils.cuberoot

Pull Request - State: closed - Opened by jknox13 almost 7 years ago

#53 - NF: Added new functionality to `distance.py`

Pull Request - State: closed - Opened by rmarkello about 7 years ago

#52 - fix: update btwn wei to fix index issue

Pull Request - State: closed - Opened by jtpdowns over 7 years ago

#51 - bctpy on readthedocs.io?

Issue - State: open - Opened by sanjayankur31 over 7 years ago
Labels: enhancement, low_priority

#50 - betweenness failure

Issue - State: closed - Opened by dPys over 7 years ago - 4 comments

#49 - Corrected masking for NaN in charpath.

Pull Request - State: closed - Opened by i-Zaak almost 8 years ago

#48 - Fix agreement() for internally consistent dimensions

Pull Request - State: closed - Opened by ariekahn almost 8 years ago

#47 - null_model_und_sign error

Pull Request - State: closed - Opened by HippocampusGirl about 8 years ago

#46 - Some PEP8 changes

Pull Request - State: open - Opened by leotrs over 8 years ago - 1 comment

#45 - LaTeX in documentation

Issue - State: open - Opened by leotrs over 8 years ago - 2 comments
Labels: enhancement

#44 - Pythonic style

Issue - State: open - Opened by leotrs over 8 years ago - 2 comments
Labels: enhancement

#43 - modularity_dir() returns a different answer to the matlab implementation

Issue - State: closed - Opened by clbarnes over 8 years ago - 1 comment

#42 - Now that master is cross-compatible, the py2 and 3 branches can probably go away

Issue - State: closed - Opened by clbarnes over 8 years ago - 4 comments
Labels: enhancement

#41 - broadcast error in community_louvain

Issue - State: closed - Opened by rschmaelzle over 8 years ago - 7 comments

#40 - Re-enable tests, readability improvements, fix transitivity bug

Pull Request - State: closed - Opened by clbarnes over 8 years ago

#38 - Update travis.yml to fix libgfortran issues

Pull Request - State: closed - Opened by clbarnes over 8 years ago

#37 - Tests fail in master due to missing libgfortran.so.1

Issue - State: closed - Opened by clbarnes over 8 years ago - 4 comments

#36 - Implementation of randmio_dir_signed takes 4/5X longer to run than MATLAB code

Issue - State: closed - Opened by aestrivex over 8 years ago - 1 comment

#35 - reorder_mod() error

Issue - State: closed - Opened by rschmaelzle almost 9 years ago - 4 comments

#34 - fast get_components

Pull Request - State: closed - Opened by ncullen93 almost 9 years ago - 1 comment

#33 - reachdist does not work

Issue - State: closed - Opened by aestrivex almost 9 years ago - 1 comment

#32 - Fix to randmio_und_connected

Pull Request - State: closed - Opened by mwshinn about 9 years ago

#31 - change threshold_proportional to use numpy's (bankers') rounding

Pull Request - State: closed - Opened by clbarnes about 9 years ago - 1 comment