Ecosyste.ms: Issues

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GitHub / aehrc/VariantSpark issues and pull requests

#135 - implement mTry

Issue - State: closed - Opened by BMJHayward almost 5 years ago - 1 comment

#134 - Error running mvn clean install

Issue - State: closed - Opened by vishaln79 about 5 years ago - 3 comments

#132 - Migrate to spark 2.4.4

Issue - State: closed - Opened by piotrszul about 5 years ago

#131 - Update Hail 0.2 support

Issue - State: closed - Opened by piotrszul about 5 years ago
Labels: enhancement

#125 - Spike/121 spike

Pull Request - State: closed - Opened by piotrszul over 5 years ago

#121 - Integrate with Hail 0.2

Issue - State: closed - Opened by piotrszul over 5 years ago

#117 - variant name in the output file

Issue - State: closed - Opened by ArashBayatDev over 5 years ago - 2 comments

#113 - pom.xml has the same dependancy twice

Issue - State: closed - Opened by Yatish0833 over 5 years ago - 2 comments

#107 - Importance is slightly biased towards last variables.

Issue - State: closed - Opened by piotrszul almost 6 years ago - 2 comments

#100 - Allow the spark based test to use different spark contexts

Issue - State: closed - Opened by piotrszul almost 6 years ago - 2 comments
Labels: techdebt

#97 - Batch size

Issue - State: closed - Opened by ArashBayatDev almost 6 years ago - 1 comment

#96 - VariantSpark Hail Interface

Issue - State: open - Opened by ArashBayatDev about 6 years ago - 1 comment
Labels: bug

#95 - Create automatic launch function for VariantSpark to AWS

Issue - State: closed - Opened by BauerLab about 6 years ago - 1 comment
Labels: enhancement

#93 - scala randomForest classifier

Issue - State: closed - Opened by fifdick about 6 years ago - 2 comments
Labels: help wanted

#91 - AIR - unbiased gini-based importance score - Algorithm

Issue - State: closed - Opened by amnonbleich over 6 years ago - 4 comments

#90 - Implement extraction method for pair-wise interactions from the tree

Issue - State: open - Opened by BauerLab over 6 years ago - 2 comments
Labels: enhancement

#89 - Output trees in JSON format

Issue - State: closed - Opened by BauerLab over 6 years ago - 2 comments
Labels: enhancement

#85 - Generate importances for random permutations of labels

Issue - State: closed - Opened by piotrszul over 6 years ago - 10 comments

#76 - Write concise user documentation

Issue - State: closed - Opened by piotrszul over 6 years ago

#73 - Multiple vs binary variables

Issue - State: open - Opened by rajputakhil almost 7 years ago
Labels: enhancement

#71 - FakeFamily - simulation of sequencing errors

Issue - State: closed - Opened by piotrszul almost 7 years ago - 1 comment

#69 - FakeFamily improvements

Issue - State: closed - Opened by piotrszul almost 7 years ago - 1 comment

#62 - Update python variants README, meta and samples

Issue - State: closed - Opened by piotrszul about 7 years ago

#61 - Integrate python variants tests with Travis CI

Issue - State: closed - Opened by piotrszul about 7 years ago

#53 - Add scalacheck to the build

Issue - State: closed - Opened by piotrszul about 7 years ago - 1 comment
Labels: techdebt

#51 - Consider using linalg distributed matrices for pairwise operations

Issue - State: closed - Opened by piotrszul about 7 years ago - 1 comment
Labels: enhancement

#31 - Add support for ingesting non-VCF data sources using DataBricks scala API

Issue - State: closed - Opened by bendruitt over 7 years ago - 1 comment

#28 - Add support for mixing variable types.

Issue - State: closed - Opened by piotrszul over 7 years ago

#27 - Add support for unbounded ordered variables

Issue - State: closed - Opened by piotrszul over 7 years ago - 1 comment

#26 - Develop benchmarking datasets

Issue - State: closed - Opened by piotrszul over 7 years ago - 1 comment

#25 - Add support for continuous variables

Issue - State: closed - Opened by piotrszul over 7 years ago - 2 comments

#24 - Implement Gradient Boosted Trees

Issue - State: closed - Opened by piotrszul over 7 years ago - 2 comments

#23 - Add support for categorical variables (un-ordered)

Issue - State: open - Opened by piotrszul over 7 years ago - 1 comment

#21 - Built-in support for FDR (False Discovery Rate) calculation

Issue - State: closed - Opened by piotrszul over 7 years ago - 1 comment

#12 - More unit tests required

Issue - State: closed - Opened by BauerLab over 7 years ago - 1 comment