Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / adw96/breakaway issues and pull requests

#195 - update versions for github actions

Pull Request - State: closed - Opened by svteichman 12 months ago

#194 - Adding AIC and AICc to betta_random()

Pull Request - State: closed - Opened by MariaAVC 12 months ago - 4 comments

#193 - Model selection from betta_random() using AIC or alternatives

Issue - State: closed - Opened by ivanllampy about 1 year ago - 2 comments

#192 - Parameter "initial_est" in betta function

Issue - State: closed - Opened by Vlasovets about 1 year ago - 2 comments

#191 - Question regarding the video from Riffomonas Project

Issue - State: open - Opened by adriaaula over 1 year ago - 1 comment

#190 - General questions: Estimated richness lower than observed richness

Issue - State: open - Opened by naurasd over 1 year ago - 3 comments

#188 - Include new tests to increase code coverage to 90%

Issue - State: open - Opened by svteichman about 2 years ago

#187 - Address failing cran checks

Pull Request - State: closed - Opened by svteichman about 2 years ago - 1 comment

#186 - remove options() from vignette

Pull Request - State: closed - Opened by paulinetrinh about 2 years ago - 1 comment

#185 - Adding return values for any remaining functions without return values

Pull Request - State: closed - Opened by svteichman about 2 years ago

#184 - R session crashes when fitting betta model

Issue - State: closed - Opened by bkmontero about 2 years ago - 6 comments

#183 - Parameter descriptions for objective Bayes functions

Issue - State: open - Opened by svteichman about 2 years ago

#182 - Fixing vignette files so everything properly knits from the repo

Pull Request - State: closed - Opened by paulinetrinh about 2 years ago - 1 comment

#181 - removing corncob from Suggested packages and from breakaway's vignettes/Github actions

Pull Request - State: closed - Opened by paulinetrinh about 2 years ago - 1 comment

#180 - Addressing most recent cran notes

Pull Request - State: closed - Opened by svteichman about 2 years ago

#179 - update version to 4.8.1

Pull Request - State: closed - Opened by paulinetrinh about 2 years ago - 1 comment

#178 - removing tidyverse from test-nof1.R

Pull Request - State: closed - Opened by svteichman about 2 years ago - 1 comment

#177 - changing suggested packages to be used conditionally in vignettes

Pull Request - State: closed - Opened by paulinetrinh about 2 years ago - 1 comment

#176 - Maria test

Pull Request - State: closed - Opened by MariaAVC about 2 years ago - 2 comments

#175 - A parameter p.digits was added to model_betta.R and model_betta_random.R

Pull Request - State: closed - Opened by MariaAVC about 2 years ago - 2 comments

#174 - Plug-in estimates and breakaway estimates are the same

Issue - State: closed - Opened by jorondo1 about 2 years ago - 3 comments

#173 - fixing datacamp pipe link in intro-diversity-estimation vignette

Pull Request - State: closed - Opened by svteichman about 2 years ago - 1 comment

#172 - Request: Adjust p-value digits

Issue - State: closed - Opened by kunstner about 2 years ago - 3 comments

#171 - Add in updated .Rbuildignore to ignore non standard files and remove …

Pull Request - State: closed - Opened by paulinetrinh about 2 years ago - 1 comment

#170 - Addressing remaining breakaway notes

Pull Request - State: closed - Opened by svteichman about 2 years ago - 2 comments

#169 - warnings in test-betta.R

Issue - State: closed - Opened by adw96 about 2 years ago - 1 comment

#168 - checking for unstated dependencies in vignettes ... NOTE

Issue - State: closed - Opened by adw96 about 2 years ago - 1 comment

#167 - CRAN issues: internals from lme4

Issue - State: closed - Opened by adw96 about 2 years ago - 1 comment

#166 - kicked off CRAN, grrrr

Issue - State: closed - Opened by adw96 about 2 years ago - 5 comments
Labels: urgent, not-amys-fault

#160 - Betta: Standard errors same for almost all factor levels

Issue - State: closed - Opened by naurasd about 2 years ago - 2 comments

#159 - Adding linux back into R-CMD-check

Pull Request - State: closed - Opened by svteichman over 2 years ago

#158 - updating hypothesis testing vignette to not use DivNet

Pull Request - State: closed - Opened by svteichman over 2 years ago - 1 comment

#157 - replacing master with main for code coverage

Pull Request - State: closed - Opened by svteichman over 2 years ago - 2 comments

#155 - adding speedyseq (to make phyloseq use match divnet) and removing ubu…

Pull Request - State: closed - Opened by svteichman over 2 years ago - 1 comment

#154 - rename branch `master` to `main`

Issue - State: closed - Opened by adw96 over 2 years ago - 1 comment

#153 - error when using the function build_frequency_count_tables ()

Issue - State: closed - Opened by fadwaMeh over 2 years ago - 3 comments

#152 - population richness estimates are lower than sample richness estimates

Issue - State: closed - Opened by Jiulong-Zhao over 2 years ago - 1 comment

#149 - Error and warning message when using breakaway() and betta()

Issue - State: closed - Opened by ivanllampy over 2 years ago - 7 comments

#148 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#147 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago

#146 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#145 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago

#144 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago

#143 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#142 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago

#141 - Vignette

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#140 - Fixed issue causing note about unstated calls to remotes and DivNet i…

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#139 - Check actions

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago

#138 - Add weird line to breakaway.Rmd to install breakaway if it isn't inst…

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#137 - Also don't merge this

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#136 - FOR TEST BRANCH ONLY! Delete vignettes to see if R CMD CHECK error pe…

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago - 1 comment

#135 - Replace devtools dependency with remotes

Pull Request - State: closed - Opened by ailurophilia almost 3 years ago

#134 - Testing

Pull Request - State: closed - Opened by ailurophilia about 3 years ago - 1 comment

#133 - Testing

Pull Request - State: closed - Opened by ailurophilia about 3 years ago - 1 comment

#132 - Testing

Pull Request - State: closed - Opened by ailurophilia about 3 years ago

#131 - Merge pull request #130 from adw96/testing

Pull Request - State: closed - Opened by ailurophilia about 3 years ago

#130 - New hypothesis tests

Pull Request - State: closed - Opened by ailurophilia about 3 years ago

#129 - Addressing issue #89 by adding static html files

Pull Request - State: closed - Opened by svteichman about 3 years ago - 1 comment

#128 - Replacing devtools::install_github() with remotes::install_github() in vignettes

Pull Request - State: closed - Opened by svteichman about 3 years ago - 1 comment

#127 - Adding informative error messages when betta() fails. See issue #118.

Pull Request - State: closed - Opened by svteichman about 3 years ago

#126 - Github actions for breakaway

Pull Request - State: closed - Opened by svteichman about 3 years ago

#125 - Interpretation of betta coefficient table significance

Issue - State: closed - Opened by cyklee about 3 years ago - 4 comments

#124 - Replace devtools::install_github() with remotes::install_github() in vignettes

Issue - State: closed - Opened by svteichman about 3 years ago - 1 comment

#123 - Multiple richness model types in betta

Issue - State: closed - Opened by msmcfarlin about 3 years ago - 4 comments

#122 - Issue 89 - Adding static html documents for vignettes to repo

Pull Request - State: closed - Opened by svteichman about 3 years ago - 1 comment

#121 - Use GitHub Actions for continuous integration

Issue - State: closed - Opened by adw96 about 3 years ago - 3 comments

#120 - Feature Request: ANOVA

Issue - State: open - Opened by twowinkel about 3 years ago - 5 comments
Labels: enhancement

#119 - Update pkgdown docs

Issue - State: closed - Opened by adw96 about 3 years ago

#118 - Better information when `betta()` fails

Issue - State: closed - Opened by adw96 about 3 years ago - 1 comment

#117 - Updates version to 4.7.4 to reflect addition of betta_lincom

Pull Request - State: closed - Opened by ailurophilia about 3 years ago

#116 - Corrects small typos in hypothesis testing vignette

Pull Request - State: closed - Opened by ailurophilia about 3 years ago

#115 - Testing

Pull Request - State: closed - Opened by ailurophilia about 3 years ago

#114 - why is breakaway returning NULL when trying to plot?

Issue - State: closed - Opened by gabrielet about 3 years ago - 2 comments

#113 - Kenward-Roger Adjustment in betta(), betta_random()?

Issue - State: closed - Opened by ailurophilia about 3 years ago - 2 comments
Labels: enhancement

#111 - Multiple comparisons demo

Issue - State: closed - Opened by msmcfarlin about 3 years ago - 12 comments

#110 - Error in uniroot(poisson_fn, c(cc/nn, nn/cc + 100)) : f() values at end points not of opposite sign

Issue - State: closed - Opened by gabrielet about 3 years ago - 3 comments
Labels: bug

#109 - Using betta multiple times to account for sub-sampling

Issue - State: closed - Opened by adityabandla about 3 years ago - 1 comment
Labels: help wanted, question, not-an-issue

#108 - Error with matrix when running betta()

Issue - State: closed - Opened by eepackard over 3 years ago - 10 comments
Labels: help wanted, question

#107 - Batch effect in alpha and beta diversity

Issue - State: closed - Opened by ari9609 over 3 years ago - 1 comment

#106 - Error message while using breakaway()

Issue - State: closed - Opened by jehaab over 3 years ago - 5 comments

#105 - build_frequency_count_tables: breakaway no longer supports file paths as inputs

Issue - State: closed - Opened by MathFl over 3 years ago - 3 comments
Labels: not-an-issue

#104 - Is the installation up to next version of R?

Issue - State: closed - Opened by elcega almost 4 years ago - 2 comments

#101 - Modif model_betta.R

Pull Request - State: closed - Opened by AliceSommer almost 4 years ago

#98 - Breakaway returns multiple models in a single dataset

Issue - State: closed - Opened by emilyjunkins almost 4 years ago

#96 - plotting group means and errors

Issue - State: closed - Opened by nicholascdove almost 4 years ago - 1 comment

#95 - Betta random sarah

Pull Request - State: closed - Opened by svteichman almost 4 years ago - 2 comments

#94 - Updating betta_random to use formula and data like in lme4

Pull Request - State: closed - Opened by svteichman almost 4 years ago - 2 comments

#93 - Updating betta_random to use formula and data like in lme4

Pull Request - State: closed - Opened by svteichman almost 4 years ago - 1 comment

#92 - Error message while trying to use function breakaway()

Issue - State: closed - Opened by jehaab over 4 years ago - 5 comments

#91 - Compare to the iNEXT package?

Issue - State: open - Opened by nick-youngblut over 4 years ago
Labels: enhancement, not urgent, not-an-issue

#90 - Using betta to test differences the delta estimates of times-points

Issue - State: closed - Opened by mestaki over 4 years ago - 4 comments

#89 - vignette missing

Issue - State: closed - Opened by rrohwer over 4 years ago - 10 comments
Labels: enhancement

#88 - No plot associated with Poisson model

Issue - State: closed - Opened by aguang over 4 years ago - 1 comment

#87 - how to select the best richness index for my data?

Issue - State: closed - Opened by guangingmai over 4 years ago - 2 comments

#86 - global test

Issue - State: closed - Opened by dleopold over 4 years ago - 8 comments

#85 - Is betta() useable with low standard error

Issue - State: closed - Opened by maherrl over 4 years ago - 4 comments