adalca/neurite issues and pull requests

#99 - Prepare labels-to-image updates.

Pull Request - State: closed - Opened by mu40 3 months ago

#98 - Remove deprecated labels-to-image model.

Pull Request - State: closed - Opened by mu40 3 months ago

#97 - Add Default Backend Change Warning for PyTorch Transition

Pull Request - State: closed - Opened by EtienneChollet 3 months ago

#96 - First wave of creating a PyTorch arm from the TensorFlow code

Pull Request - State: open - Opened by EtienneChollet 3 months ago - 2 comments

#95 - Cast constant to desired output type.

Pull Request - State: closed - Opened by mu40 5 months ago

#94 - Make tensor shapes compile-time constants for XLA.

Pull Request - State: closed - Opened by mu40 5 months ago

#93 - Wrap a constant value in a Keras layer.

Pull Request - State: closed - Opened by mu40 6 months ago

#92 - Use `compute_dtype` for compatibility with Keras 3.

Pull Request - State: closed - Opened by mu40 6 months ago

#91 - Call layers, not TensorFlow functions on Keras tensors.

Pull Request - State: closed - Opened by mu40 6 months ago

#90 - Create layers for some of the labels-to-image functionality.

Pull Request - State: closed - Opened by mu40 6 months ago

#89 - Make imports compatible with TensorFlow 2.17.0.

Pull Request - State: closed - Opened by mu40 6 months ago

#88 - Rename labels-to-image models.

Pull Request - State: closed - Opened by mu40 7 months ago

#87 - ImportError: cannot import name 'mean_absolute_error' from 'tensorflow.keras.losses' (/Library/Frameworks/Python.framework/Versions/3.10/lib/python3.10/site-packages/keras/_tf_keras/keras/losses/init.py)

Issue - State: closed - Opened by dwang6524 8 months ago - 5 comments

#86 - Return figure and axes.

Pull Request - State: closed - Opened by mu40 8 months ago

#85 - Second Fix to Plotting Slices

Pull Request - State: closed - Opened by Catherine0505 11 months ago

#84 - Follow-up Update on Plotting Slices

Pull Request - State: closed - Opened by Catherine0505 11 months ago

#83 - Suggested Update of neurite/py/plot.py: Plotting Slices.

Pull Request - State: closed - Opened by Catherine0505 11 months ago

#82 - Fix seeded randomization.

Pull Request - State: closed - Opened by mu40 12 months ago

#81 - fix axes_off=False in plot.slices

Pull Request - State: closed - Opened by halleewong about 1 year ago - 3 comments

#80 - Remove warning about deprecated `dtype` argument.

Pull Request - State: closed - Opened by mu40 about 1 year ago

#79 - Add PyTorch HyperConv layers

Pull Request - State: open - Opened by aviziskind about 1 year ago

#78 - Support for new Baker et al. color scheme, and plotting flow on a particular axis

Pull Request - State: open - Opened by aviziskind about 1 year ago

#77 - Fix output data type.

Pull Request - State: closed - Opened by mu40 over 1 year ago

#76 - Neurite is incompatible with python 3.11

Issue - State: open - Opened by vasl12 over 1 year ago - 1 comment

#75 - Fixed deprecated inspect.getargspec dependency in tf/modelio.py

Pull Request - State: closed - Opened by inhuszar over 1 year ago - 1 comment

#74 - Code Refactoring

Pull Request - State: open - Opened by tosemml over 1 year ago

#73 - Add new `labels_to_image` model.

Pull Request - State: closed - Opened by mu40 over 1 year ago

#72 - Use default `self.dtype` for layer variables.

Pull Request - State: closed - Opened by mu40 over 1 year ago - 2 comments

#71 - De-duplicate axis-normalization code.

Pull Request - State: closed - Opened by mu40 over 1 year ago

#70 - Add new augmentation layers.

Pull Request - State: closed - Opened by mu40 over 1 year ago

#69 - Add support for random blur.

Pull Request - State: closed - Opened by mu40 over 1 year ago

#68 - Remove unneeded assertion.

Pull Request - State: closed - Opened by mu40 over 1 year ago - 1 comment

#67 - Error cannot provide both bin centers and nb_bins, while only providing bin centers

Issue - State: open - Opened by zozo19999 almost 2 years ago - 1 comment

#66 - Remove unneeded assertion to support TF 2.12.0.

Pull Request - State: closed - Opened by mu40 almost 2 years ago

#65 - Optimized for speed

Pull Request - State: open - Opened by ajinkya-kulkarni almost 2 years ago

#64 - Optimized functions to handle large arrays

Pull Request - State: open - Opened by ajinkya-kulkarni almost 2 years ago

#63 - Neurite is incompatible with `numpy==1.24` due to upstream Pystrum `AttributeError`

Issue - State: open - Opened by joshuacwnewton about 2 years ago

#62 - Make version-checking compatible with updated Packaging library.

Pull Request - State: closed - Opened by avnishks about 2 years ago

#61 - Compute center of mass.

Pull Request - State: closed - Opened by mu40 over 2 years ago

#60 - Custom colormap(s) for plot.flow()

Issue - State: open - Opened by jondo over 2 years ago - 1 comment

#59 - Fix the Readme's issues link

Pull Request - State: closed - Opened by jondo over 2 years ago

#58 - Fixed the paths for plot.py and dataproc.py in README.md

Pull Request - State: closed - Opened by kinshuk1207 over 2 years ago

#57 - Explaining HyperConvFromDense

Issue - State: open - Opened by jackyko1991 over 2 years ago - 4 comments

#56 - Create publish.yml

Pull Request - State: open - Opened by kousu almost 3 years ago - 1 comment

#55 - Complete SynthMorph reference.

Pull Request - State: closed - Opened by mu40 almost 3 years ago

#54 - error in ne.utils.resize:

Issue - State: open - Opened by FishJyz almost 3 years ago - 1 comment

#53 - Fix label indexing for multi-channel case.

Pull Request - State: closed - Opened by mu40 about 3 years ago

#52 - Convolve dynamically sized tensors.

Pull Request - State: closed - Opened by mu40 about 3 years ago

#51 - Interpolate only if needed.

Pull Request - State: closed - Opened by mu40 about 3 years ago

#50 - Specify minimum SD for Perlin noise.

Pull Request - State: closed - Opened by mu40 about 3 years ago - 1 comment

#49 - Support half-precision compute type.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#48 - Accept TensorFlow seeds.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#47 - Compute the FFT over any axis.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#46 - Squeeze volumes before plotting, plot eager tensors.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#45 - Update references.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#44 - Add support for plotting eager tensor.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#43 - About kears version

Issue - State: open - Opened by haoyayuzzz over 3 years ago - 1 comment

#42 - Independently min-max normalize each batch or feature.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#41 - Improve performance

Pull Request - State: open - Opened by DLPerf over 3 years ago

#40 - Improve separable convolution.

Pull Request - State: closed - Opened by mu40 over 3 years ago - 2 comments

#39 - Performance issue in the definition of interpn, neurite/tf/utils/utils.py (P1)

Issue - State: open - Opened by DLPerf over 3 years ago - 1 comment
Labels: enhancement

#38 - Support other floating-point types.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#37 - Update SynthMorph reference.

Pull Request - State: closed - Opened by mu40 over 3 years ago

#36 - Fix license mismatch

Pull Request - State: closed - Opened by neel-dey over 3 years ago

#35 - Adding the torch version of mutual information computation

Pull Request - State: open - Opened by junyuchen245 almost 4 years ago

#34 - 3D plots using neurone.plot.flow not properly visualised

Issue - State: open - Opened by Kanyq almost 4 years ago - 3 comments

#33 - Seed random Gaussian kernels.

Pull Request - State: closed - Opened by mu40 almost 4 years ago

#32 - Update generative model.

Pull Request - State: closed - Opened by mu40 almost 4 years ago

#31 - Compatibility issue with recent TensorFlow versions

Issue - State: closed - Opened by timroelofs123 about 4 years ago - 1 comment
Labels: tf-version-bug

#30 - Specify lower bound of sampling interval.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#29 - Minor edits.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#28 - Document inverse operations.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#27 - Upgrade FFT and helper layers.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#26 - Move synthesis from VoxelMorph.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#25 - Add min-max normalization.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#24 - Fix syntax error.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#23 - Separate Gaussian kernel and randomize SD.

Pull Request - State: closed - Opened by mu40 about 4 years ago

#22 - Adding indexing parameter to plot.flow

Pull Request - State: closed - Opened by halleewong over 4 years ago

#21 - Add install instructions to README

Pull Request - State: closed - Opened by ahoopes over 4 years ago

#20 - Fix MeanStream and CovStream

Pull Request - State: closed - Opened by neel-dey over 4 years ago - 1 comment

#19 - Need better model title

Issue - State: open - Opened by adalca over 4 years ago

#18 - updating master from legacy

Pull Request - State: closed - Opened by adalca over 4 years ago

#17 - Master

Pull Request - State: closed - Opened by adalca over 4 years ago

#16 - Master

Pull Request - State: closed - Opened by adalca over 4 years ago

#15 - Make SpatialTransformer more flexible.

Pull Request - State: closed - Opened by mu40 over 4 years ago

#14 - Merge code blocks.

Pull Request - State: closed - Opened by mu40 over 4 years ago

#13 - Update LocallyConnected3D implementations.

Pull Request - State: closed - Opened by mu40 over 4 years ago

#12 - Fix fill value for data types other than float32.

Pull Request - State: closed - Opened by mu40 over 4 years ago

#11 - Save configuration of custom layers.

Pull Request - State: closed - Opened by mu40 over 4 years ago

#10 - Specify value to use for points outside the volume.

Pull Request - State: closed - Opened by mu40 over 4 years ago

#9 - Change keras to tensorflow.keras.

Pull Request - State: closed - Opened by mu40 almost 5 years ago

#8 - Affine Warp

Issue - State: closed - Opened by sergiumocanu almost 5 years ago - 2 comments

#7 - fix tf.Dimension for TF2 compatibility

Pull Request - State: closed - Opened by ahoopes almost 5 years ago

#6 - Replicating Paper Results

Issue - State: open - Opened by patleitao almost 5 years ago

#5 - Resize symmetrically and avoid recreating grid.

Pull Request - State: closed - Opened by mu40 over 5 years ago
Labels: bug, enhancement

#4 - How to reproduce results from your paper "Unsupervised Data Imputation via Variational Inference of Deep Subspaces"?

Issue - State: open - Opened by bitlater over 5 years ago

#3 - How to train this model for paper "Anatomical Priors in Convolutional Networks for Unsupervised Biomedical Segmentation"

Issue - State: closed - Opened by xiaoman-zhang almost 6 years ago

#2 - Is it a typo in the paper?

Issue - State: closed - Opened by huangmozhilv over 6 years ago - 1 comment

#1 - Create LICENSE.md

Pull Request - State: closed - Opened by adalca over 6 years ago

GitHub / adalca/neurite issues and pull requests