Ecosyste.ms: Issues

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GitHub / ad12/meddlr issues and pull requests

#114 - 2 d motion corruption main

Pull Request - State: open - Opened by TerminalVelocityDPro about 1 year ago

#113 - Fixing bug in docs for update config config.rst

Pull Request - State: open - Opened by gattia about 1 year ago - 1 comment

#112 - Functional dice_score not learning

Issue - State: open - Opened by gattia about 1 year ago - 1 comment

#111 - Optimize unrolled

Pull Request - State: closed - Opened by ad12 about 1 year ago - 1 comment

#110 - add dynamic building for optimizers

Pull Request - State: closed - Opened by ad12 about 1 year ago - 1 comment

#109 - update instructions for python version and finding pytorch version

Pull Request - State: closed - Opened by ad12 about 1 year ago

#108 - add sophiag optimizer

Pull Request - State: closed - Opened by ad12 about 1 year ago - 1 comment

#107 - Manage lint E721

Pull Request - State: closed - Opened by ad12 about 1 year ago

#106 - upgrade torchmetrics to 1.0

Pull Request - State: open - Opened by ad12 about 1 year ago - 1 comment

#105 - Vortex ssdu

Pull Request - State: open - Opened by ad12 about 1 year ago

#104 - add support for 1D equisapced sampling

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#103 - Update VORTEX demo and README

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#102 - update the vortex gif and readme

Pull Request - State: closed - Opened by ad12 over 1 year ago

#101 - Vortex demo

Pull Request - State: closed - Opened by ad12 over 1 year ago

#100 - Config supports nested string formatting

Pull Request - State: closed - Opened by ad12 over 1 year ago

#99 - add meddlr change for compatibility with skm-tea dataset

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#98 - Support for original SSDU

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#97 - Remove package.version from toplevel import

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#96 - Auto-build for pypi

Pull Request - State: closed - Opened by ad12 over 1 year ago

#95 - [bumpversion] 0.0.8

Pull Request - State: closed - Opened by ad12 over 1 year ago

#94 - Version upgrade util

Pull Request - State: closed - Opened by ad12 over 1 year ago

#93 - Ci/autopypi

Pull Request - State: closed - Opened by ad12 over 1 year ago

#92 - Ci/autopypi

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#91 - add auto pypi upload

Pull Request - State: closed - Opened by ad12 over 1 year ago

#90 - Update linting and fix pandas numeric bug

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#88 - Could not convert dd969854-ec56-4ccc-b7ac-ff4cd7735095-0 to numeric

Issue - State: closed - Opened by Sarah-2021-scu over 1 year ago - 6 comments

#87 - Motion affine

Pull Request - State: closed - Opened by ad12 over 1 year ago

#86 - update ci to not run as many tests for torchmetrics

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#85 - Update formatters

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#84 - Add unrolled network with conjugate gradient

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#83 - Add support for augmentations in SSDU

Pull Request - State: closed - Opened by ad12 over 1 year ago - 1 comment

#82 - v0.0.7rc1 -> v0.0.7

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#81 - bumpversion v0.0.7rc1

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#80 - Fix SKM-TEA compatibility with meddlr in colab

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#79 - v0.0.6

Pull Request - State: closed - Opened by ad12 almost 2 years ago

#78 - Not compatible with gdown==4.6.0

Issue - State: open - Opened by ad12 almost 2 years ago

#77 - bumpversion v0.0.6rc1

Pull Request - State: closed - Opened by ad12 almost 2 years ago

#76 - prelimary monai support

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#75 - initial support for metrics as loss functions

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#74 - parse sequence-index syntax in get_recursive

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#73 - add pad like to affine

Pull Request - State: closed - Opened by ad12 almost 2 years ago

#72 - Auto docs

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#71 - remove constraint that flushing cant be used in distributed processes

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#70 - bumpversion v0.0.4 -> v0.0.5

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#69 - Clean up DDP support

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#68 - Fix ssfd dependencies

Pull Request - State: closed - Opened by ad12 almost 2 years ago - 1 comment

#67 - Register train, test, and valid split to DatasetCatalog

Issue - State: closed - Opened by aldiak almost 2 years ago - 4 comments

#66 - N2r refactor

Pull Request - State: closed - Opened by ad12 about 2 years ago

#65 - Add utilities for dynamic edge mask computation

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#64 - avoid reading user environment during testing

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#63 - bumpversion: v0.0.3 -> v0.0.4

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#62 - bumpversion: v0.0.3 -> v0.1.0

Pull Request - State: closed - Opened by ad12 about 2 years ago

#61 - update pt version to support arbitrary comparisions

Pull Request - State: closed - Opened by ad12 about 2 years ago

#60 - update torchvision affine resample -> interpolation

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#59 - Invalid Version when Using Self-Compiled/Beta PyTorch

Issue - State: closed - Opened by billzhonggz about 2 years ago - 1 comment
Labels: bug

#58 - SSFD and LPIPS metrics

Pull Request - State: closed - Opened by philadamson93 about 2 years ago - 1 comment

#57 - refactor conv block and generalized unet to use LayerInfo abstraction

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#56 - deprecate 3.6 support in CI

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#55 - add LayerInfo

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#54 - add loss funcs

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#52 - bumpversion v0.0.2 -> v0.0.3

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#51 - Fix doc build

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#50 - Runner

Pull Request - State: closed - Opened by ad12 about 2 years ago

#49 - Add comments to meddlr files

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#48 - fix visualization code, fix hdf5 max attempt

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#47 - Maybe add singlecoil support?

Issue - State: closed - Opened by YuyangXueEd about 2 years ago - 2 comments
Labels: stale

#46 - add ssim loss, fix path field

Pull Request - State: closed - Opened by ad12 about 2 years ago - 1 comment

#45 - Add fix for training/evaling on cpu

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#44 - use os.environ.get instead of os.environ[] for CUDA_VISIBLE_DEVICES

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#43 - refactor finding checkpoints to accept an operation

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#42 - Add preliminary docs

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#41 - Dataset file 'b7d435a1-2421-48d2-946c-d1b3372f7c60.h5' not found

Issue - State: closed - Opened by Sarah-2021-scu over 2 years ago - 1 comment

#40 - Minor fixes: renaming ssrecon -> meddlr

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#39 - bumpversion: v0.0.1 -> v0.0.2

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#38 - add support for torchmetrics==0.8.0

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#37 - add config for controlling unrolled step size

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#36 - Upgrade black to 22.3.0

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#35 - Add support for retrying reading for a file in HDF5Manager

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#34 - bugfix: support logging with supervised consistency for Noise2Recon

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#33 - bumpversion: v0.0.1a5 -> v0.0.1

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#32 - bugfix: finding weights should match to filename not match object

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#31 - Move model zoo to HuggingFace

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#30 - Create LICENSE

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#29 - Find long-term solution for hosting models

Issue - State: closed - Opened by ad12 over 2 years ago

#28 - Update runnable properties in meddlr

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#27 - Add model-zoo for pretrained models

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#26 - update cache dir when doing ci to avoid same machine cache conflicts

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#25 - [WIP] Handle torchmetrics 0.7.0

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#24 - tempfix: set upperbound on torchmetrics version

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#23 - Add support for torchmetrics>=0.7.0

Issue - State: closed - Opened by ad12 over 2 years ago

#22 - add mean absolute error metric

Pull Request - State: closed - Opened by ad12 over 2 years ago

#21 - fix seeding for RandomMaskFunc1D

Pull Request - State: closed - Opened by ad12 over 2 years ago

#20 - [WIP] Add tests for config and experiment utilities

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#19 - bugfix: add support for multi-channel inputs for MR reconstruction models

Pull Request - State: closed - Opened by ad12 over 2 years ago - 1 comment

#18 - Handle arbitrary dimensional inputs into nn.Modules

Issue - State: open - Opened by ad12 over 2 years ago

#17 - [WIP] Metrics

Pull Request - State: closed - Opened by ad12 almost 3 years ago

#16 - Support force downloading from gcp

Pull Request - State: closed - Opened by ad12 almost 3 years ago

#15 - bugfix: expand user path for default cache dir

Pull Request - State: closed - Opened by ad12 almost 3 years ago - 1 comment