Ecosyste.ms: Issues

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GitHub / ad12/DOSMA issues and pull requests

#139 - Keras Version?

Issue - State: closed - Opened by gattia 10 months ago - 1 comment

#138 - Streamlined Elastix integration

Issue - State: open - Opened by gattia about 1 year ago

#137 - Update mapss logic to handle masks

Pull Request - State: open - Opened by gattia over 1 year ago

#136 - Mapss T2 calculation requires mask[BUG]

Issue - State: open - Opened by gattia over 1 year ago

#135 - make logging directory default to user owned directory

Issue - State: open - Opened by asch99 about 2 years ago

#134 - Adding model to segment bones

Pull Request - State: open - Opened by gattia about 2 years ago - 2 comments

#133 - Allow `group_by` and `sort_by` to take a list of tags

Issue - State: open - Opened by sluijs over 2 years ago - 3 comments

#132 - Change default setting for `group_by` in the DICOM reader

Issue - State: open - Opened by sluijs over 2 years ago - 1 comment

#131 - Add support for Zarr IO

Pull Request - State: closed - Opened by sluijs almost 3 years ago - 1 comment

#130 - bumpversion: v0.1.1 -> v0.1.2

Pull Request - State: closed - Opened by ad12 almost 3 years ago

#129 - Add load/save as aliases for read/write

Pull Request - State: closed - Opened by ad12 almost 3 years ago

#128 - Updated final interpolation to be cubic for interregister

Pull Request - State: closed - Opened by gattia almost 3 years ago - 1 comment

#126 - Upgrade black to v22.3.0

Pull Request - State: open - Opened by ad12 almost 3 years ago

#125 - update bibtex for citation

Pull Request - State: closed - Opened by ad12 almost 3 years ago

#124 - update makefile to limit black formatter version

Pull Request - State: closed - Opened by ad12 almost 3 years ago

#123 - Extend file extensions

Pull Request - State: closed - Opened by fsantini about 3 years ago

#122 - fix docs build issues

Pull Request - State: closed - Opened by ad12 about 3 years ago

#121 - v0.1.1

Pull Request - State: closed - Opened by ad12 about 3 years ago

#120 - Updating Elastix download link & recommended version

Pull Request - State: closed - Opened by gattia over 3 years ago - 1 comment

#119 - [BUG] Documentation

Issue - State: closed - Opened by gattia over 3 years ago - 2 comments

#118 - Updating Documentation

Pull Request - State: closed - Opened by gattia over 3 years ago

#117 - fix formatting for skm-tea model docs

Pull Request - State: closed - Opened by ad12 over 3 years ago

#116 - [BUG] dosma.register() throws an error when moving_mask is passed to the function

Issue - State: closed - Opened by barma7 over 3 years ago - 1 comment

#115 - Models

Pull Request - State: closed - Opened by ad12 over 3 years ago

#114 - Improve registration and subdivision efficiency

Pull Request - State: closed - Opened by ad12 over 3 years ago

#113 - Make Tensorflow imports lazy

Issue - State: open - Opened by ad12 over 3 years ago

#112 - Add support for loading dicoms from bytes

Pull Request - State: closed - Opened by ad12 over 3 years ago

#111 - simple itk functions ? (resampling & registration) [FEATURE]

Issue - State: open - Opened by gattia over 3 years ago - 2 comments

#110 - add np.pad support

Pull Request - State: closed - Opened by ad12 over 3 years ago

#109 - add configurable logger

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#108 - Adding import/export & visualization functionality for MedicalVolume

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#107 - bump version: v0.0.13

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#106 - [BUG] TensorFlow 2.5.0 not supported

Issue - State: open - Opened by ad12 almost 4 years ago

#105 - bug fix: splitting extension requires filepath to be a string

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#104 - upgrade dosma to prerelease 0.0.13rc2

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#103 - Update documentation and README

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#102 - bug fix: fix mask for quantitative fitting in cones/mapss

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#101 - add numpy routines - shares_memory, zeros_like, ones_like

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#100 - reduce memory footprint of MonoExponentialFit

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#99 - upgrade dosma to prerelease 0.0.13rc1

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#98 - update version checker in dosma

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#97 - Add support to initialize MonoExpontentialFit with polyfit output

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#96 - add registration tests for cubequant, cones, mapss without data

Pull Request - State: closed - Opened by ad12 almost 4 years ago - 1 comment

#95 - Add elastix support to CI

Pull Request - State: closed - Opened by ad12 almost 4 years ago - 1 comment

#94 - add flags for controlling unittests

Pull Request - State: closed - Opened by ad12 almost 4 years ago - 1 comment

#93 - Configure CI using Github Actions

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#92 - Refactor library

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#91 - Refactor file constants and add debug to env

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#90 - Support initializing CurveFitter with numpy arrays and MedicalVolumes

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#89 - Docs

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#88 - add support for Path objects in dosma

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#87 - make readers/writers callable

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#86 - Persist keras models and add state_dicts to readers/writers

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#85 - Add support for polyfit

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#84 - Fix dicom loading for xrays

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#82 - Refactoring ScanSequence API using mixins and duck typing

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#81 - Add np.clip support and simple array accessor

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#80 - Improve dicom reading/writing workflow with grouping and sorting

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#79 - Bug fix: reshape headers for fitting to allow broadcasting

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#78 - Add minimal dicom loading based on PatientOrientation

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#77 - Basic NumPy Interoperability for MedicalVolumes

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#76 - Adding dtype/astype + limited hdf5 support

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#75 - Add multi-dimension header functionality

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#74 - Bug fixes

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#72 - Add generalized fitting with CurveFitter

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#70 - Adding array-like support for MedicalVolume

Pull Request - State: closed - Opened by ad12 almost 4 years ago

#69 - Add developer utils

Pull Request - State: closed - Opened by ad12 about 4 years ago

#68 - Migrate docs to readthedocs

Pull Request - State: closed - Opened by ad12 about 4 years ago

#67 - add basic support and sitk functionality for multi-channel volumes

Pull Request - State: closed - Opened by ad12 about 4 years ago

#66 - Make `MedicalVolume.reformat` inplace optional

Pull Request - State: closed - Opened by ad12 about 4 years ago

#65 - Add math and boolean logic to MedicalVolume

Pull Request - State: closed - Opened by ad12 about 4 years ago

#64 - Add conversion MedicalVolume<->SimpleITK.Image

Pull Request - State: closed - Opened by ad12 about 4 years ago

#63 - add verbose and file format options to dicom io

Pull Request - State: closed - Opened by ad12 about 4 years ago

#62 - Load dicoms from file(s)

Pull Request - State: closed - Opened by ad12 about 4 years ago

#61 - Dev

Pull Request - State: closed - Opened by ad12 about 4 years ago

#59 - Add workaround for MacOS elastix registration path issues

Pull Request - State: closed - Opened by ad12 about 4 years ago

#58 - Dev

Pull Request - State: closed - Opened by ad12 about 4 years ago

#57 - Do not enforce upper bound on pydicom version

Issue - State: closed - Opened by ad12 about 4 years ago

#56 - Adding dosma.utils.registration module

Pull Request - State: closed - Opened by ad12 about 4 years ago

#54 - Add multiple worker support for loading and fitting

Pull Request - State: closed - Opened by ad12 about 4 years ago

#53 - Make DOSMA pip installable locally

Pull Request - State: closed - Opened by ad12 over 4 years ago

#52 - Add support for multi-class segmentation

Pull Request - State: closed - Opened by ad12 over 4 years ago

#51 - Add fast way to interpret orientation from DICOMs without loading full volume

Issue - State: closed - Opened by ad12 over 4 years ago - 1 comment

#50 - Bit-precision of NiFTI scans result in different zero-mean, unit std. dev. volumes

Issue - State: closed - Opened by ad12 over 4 years ago - 1 comment

#49 - Activate dosma_env automatically if not the current environment

Issue - State: closed - Opened by ad12 over 4 years ago - 1 comment

#48 - Installation Requirement

Issue - State: closed - Opened by ghost over 4 years ago - 1 comment

#47 - Bilateral automatic segmentation bug. Segmentation works only for one of the knees

Issue - State: closed - Opened by barma7 over 4 years ago - 1 comment
Labels: bug

#44 - Add support for Cones

Pull Request - State: closed - Opened by ad12 about 5 years ago

#43 - Feat/general

Pull Request - State: closed - Opened by ad12 over 5 years ago

#40 - Option to store data in csv instead of xlsx format

Issue - State: closed - Opened by ad12 over 5 years ago - 1 comment

#39 - Windows OS support

Issue - State: closed - Opened by ad12 over 5 years ago - 1 comment

#38 - Feat/tissues

Pull Request - State: closed - Opened by ad12 over 5 years ago

#37 - Allow manual region division

Issue - State: closed - Opened by ad12 over 5 years ago - 1 comment

#36 - Feat/segmentation

Pull Request - State: closed - Opened by ad12 almost 6 years ago