Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / achtman-lab/GrapeTree issues and pull requests

#112 - GrapeTree Links - are not working

Issue - State: open - Opened by elina2410 5 months ago

#111 - Docker image

Issue - State: open - Opened by MMirabito 6 months ago

#110 - SNPs alignment as input

Issue - State: open - Opened by mlarjim 8 months ago - 2 comments

#109 - Unable to visualise tree in Microreact.

Issue - State: open - Opened by khalil-abudahab 9 months ago

#108 - missing packages in requirements.txt

Issue - State: open - Opened by tsladecek 10 months ago

#107 - MemoryError

Issue - State: open - Opened by eam12 almost 2 years ago

#106 - Installation error using conda?

Issue - State: closed - Opened by sekhwal over 2 years ago

#105 - grapetree conda installation error?

Issue - State: closed - Opened by sekhwal over 2 years ago

#104 - Cannot Connect to the backend server

Issue - State: open - Opened by davidmaimoun over 2 years ago - 1 comment

#103 - How to make phylogenetic using binary data

Issue - State: open - Opened by sekhwal over 2 years ago - 1 comment

#99 - Estimate breaks with ninja and distance methods

Issue - State: open - Opened by peterjc about 3 years ago

#98 - fix: collapse and uncollapse nodes

Pull Request - State: open - Opened by IvanPenyaHuguet about 3 years ago

#97 - Stuck at the "Loading Data" wheel

Issue - State: open - Opened by kringwa2 over 3 years ago

#96 - Collapse selected nodes doesn't do anything?

Issue - State: open - Opened by LauraVP1994 over 3 years ago - 1 comment

#95 - GrapeTree links via GitHub are not working

Issue - State: closed - Opened by Fiona-McDougall almost 4 years ago - 2 comments

#94 - Programmatically create grapetree visualizations

Issue - State: open - Opened by crarlus about 4 years ago - 4 comments

#93 - Problems installing latest grapetree

Issue - State: open - Opened by crarlus about 4 years ago

#92 - Uploading metadata

Issue - State: open - Opened by peflanag over 4 years ago - 2 comments

#91 - merge

Pull Request - State: closed - Opened by zheminzhou over 4 years ago

#90 - mege

Pull Request - State: closed - Opened by zheminzhou over 4 years ago

#89 - GrapeTree Clustering

Issue - State: open - Opened by jimmyliu1326 over 4 years ago

#88 - GrapeTree is still available???

Issue - State: closed - Opened by mabouelk almost 5 years ago - 1 comment

#87 - Understanding the grapetree distance computation

Issue - State: closed - Opened by crarlus almost 5 years ago - 1 comment

#86 - Installation with pip

Issue - State: closed - Opened by emmadoughty about 5 years ago - 2 comments

#85 - Fix relative import

Pull Request - State: closed - Opened by PertuyF over 5 years ago - 1 comment

#84 - pip install

Issue - State: closed - Opened by bifidoman over 5 years ago - 2 comments

#83 - app for mac

Issue - State: closed - Opened by bifidoman over 5 years ago - 1 comment

#82 - Strange behaviour with MSTreeV2

Issue - State: open - Opened by LordRust over 5 years ago

#81 - Vieweing all labels of identical isolates

Issue - State: open - Opened by LordRust over 5 years ago - 1 comment

#80 - grapetree and Python 3.6

Issue - State: closed - Opened by crarlus almost 6 years ago - 5 comments

#79 - Scale bar (Feature Request)

Issue - State: closed - Opened by chrisgulvik almost 6 years ago - 1 comment

#78 - ImportError: No module named ...

Pull Request - State: closed - Opened by bryan-brancotte about 6 years ago - 2 comments

#77 - Add rapidnj mac binary

Pull Request - State: closed - Opened by nluhmann over 6 years ago

#76 - Standalone: Adding new metadata via file upload duplicates all entries

Issue - State: closed - Opened by nluhmann over 6 years ago - 1 comment

#75 - Python35 support

Pull Request - State: closed - Opened by happykhan over 6 years ago - 1 comment

#74 - Fix importing metadata on local website.

Pull Request - State: closed - Opened by kjolley almost 7 years ago

#73 - The Help text for EnteroBase (?) goes outside of the box.

Issue - State: closed - Opened by happykhan almost 7 years ago

#72 - merge

Pull Request - State: closed - Opened by zheminzhou almost 7 years ago

#71 - merge

Pull Request - State: closed - Opened by zheminzhou almost 7 years ago

#70 - merge

Pull Request - State: closed - Opened by zheminzhou almost 7 years ago

#69 - EnteroBase does not save number of groups

Issue - State: closed - Opened by happykhan almost 7 years ago - 1 comment

#68 - Group number setting doesnt show other.

Issue - State: closed - Opened by happykhan almost 7 years ago

#67 - recompiled edmonds-osx

Pull Request - State: closed - Opened by nluhmann almost 7 years ago

#66 - Crashing on larger datasets on Windows 10

Issue - State: closed - Opened by smutschall about 7 years ago - 3 comments

#65 - Warning for duplicate taxons.

Issue - State: open - Opened by happykhan about 7 years ago

#63 - simulation scripts

Pull Request - State: closed - Opened by nluhmann over 7 years ago

#62 - GUI changing

Issue - State: closed - Opened by zheminzhou over 7 years ago - 1 comment

#61 - wish list --- Mark

Issue - State: closed - Opened by zheminzhou over 7 years ago - 1 comment

#60 - Help for "branches longer than" not shown

Issue - State: closed - Opened by happykhan over 7 years ago

#59 - Enterobase buttons

Issue - State: closed - Opened by nluhmann over 7 years ago

#58 - general menu adjustments

Issue - State: closed - Opened by nluhmann over 7 years ago

#57 - metadata table headers not aligned to rest of the columns

Issue - State: closed - Opened by nluhmann over 7 years ago
Labels: bug

#56 - branch scaling issue

Issue - State: closed - Opened by nluhmann over 7 years ago

#55 - "Load selected" when only hypothetical nodes are selected

Issue - State: closed - Opened by nluhmann over 7 years ago
Labels: bug

#54 - figure legend overlaps menu

Issue - State: closed - Opened by nluhmann over 7 years ago

#53 - context menu selections run out of window

Issue - State: closed - Opened by nluhmann over 7 years ago

#52 - Others in legend does have a number.

Issue - State: closed - Opened by happykhan over 7 years ago - 1 comment

#51 - Enterobase mst

Issue - State: closed - Opened by happykhan over 7 years ago

#50 - Remove load metadata

Issue - State: closed - Opened by happykhan over 7 years ago

#49 - AgonA Tutorial example.

Issue - State: closed - Opened by happykhan over 7 years ago - 1 comment

#48 - Help

Issue - State: closed - Opened by happykhan over 7 years ago

#47 - Issues with MacOSX binaries

Issue - State: closed - Opened by happykhan over 7 years ago

#46 - Legend issues

Issue - State: closed - Opened by happykhan over 7 years ago - 1 comment

#45 - Hypothetical nodes shown on legend.

Issue - State: closed - Opened by happykhan over 7 years ago

#44 - Long columns names break drop downs.

Issue - State: closed - Opened by happykhan over 7 years ago

#42 - MSTREE.py does not handle special character for Newick output

Issue - State: closed - Opened by happykhan over 7 years ago

#41 - Load Tree/Profile doesnt return an error message

Issue - State: closed - Opened by happykhan over 7 years ago

#40 - Memory error on edmonds for Windows machines.

Issue - State: closed - Opened by happykhan over 7 years ago

#39 - right click menu

Issue - State: closed - Opened by zheminzhou over 7 years ago - 1 comment

#38 - Go back to the default layout

Issue - State: closed - Opened by zheminzhou over 7 years ago

#37 - detailed control of all dragbars

Issue - State: closed - Opened by zheminzhou over 7 years ago

#36 - show/disable hypothetical nodes

Issue - State: closed - Opened by zheminzhou over 7 years ago

#35 - A control pane for the figure legend

Issue - State: closed - Opened by zheminzhou over 7 years ago

#34 - Add borders around the key colors

Issue - State: closed - Opened by zheminzhou over 7 years ago

#32 - All links in the GUI are opened in a new window

Issue - State: closed - Opened by zheminzhou over 7 years ago

#31 - Warning when the users try to leave the page.

Issue - State: closed - Opened by zheminzhou over 7 years ago

#29 - Centre is spelt CENTRE not center

Issue - State: closed - Opened by happykhan over 7 years ago

#28 - "ID" requirement for metadata is too specific

Issue - State: closed - Opened by happykhan over 7 years ago

#27 - Parameters working with profiles

Issue - State: closed - Opened by happykhan over 7 years ago

#26 - Selection layout option

Issue - State: closed - Opened by happykhan over 7 years ago

#25 - Method Dropdown still shown

Issue - State: closed - Opened by happykhan over 7 years ago

#24 - Disabling buttons

Issue - State: closed - Opened by happykhan over 7 years ago

#23 - Limit categories coloured

Issue - State: closed - Opened by happykhan over 7 years ago

#22 - Alter. collapsing branch

Issue - State: closed - Opened by happykhan over 7 years ago

#21 - Button to bring back splash screen

Issue - State: closed - Opened by happykhan over 7 years ago

#20 - file name in the top left shown in italics

Issue - State: closed - Opened by happykhan over 7 years ago

#19 - Ability to Save Bitmap (PNG file)

Issue - State: closed - Opened by happykhan over 7 years ago

#18 - Better exception handling for BASA/ maketree step:

Issue - State: closed - Opened by happykhan over 7 years ago

#17 - Rename MSTree_holder.html to index.html

Pull Request - State: closed - Opened by zheminzhou over 7 years ago

#16 - "Load newick" button doesnt do anything

Issue - State: closed - Opened by happykhan over 7 years ago

#14 - Algorithm

Pull Request - State: closed - Opened by happykhan over 7 years ago

#13 - Algorithm

Pull Request - State: closed - Opened by happykhan over 7 years ago

#12 - A bunch of updates for handling parameters

Pull Request - State: closed - Opened by happykhan over 7 years ago