Ecosyste.ms: Issues

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GitHub / abTEM/abTEM issues and pull requests

#69 - Camera MTF

Issue - State: closed - Opened by TomaSusi over 2 years ago - 11 comments

#68 - Thickness series

Issue - State: closed - Opened by kotabata over 2 years ago - 2 comments

#67 - Import from collections.abc rather than collections

Pull Request - State: closed - Opened by jan-janssen over 2 years ago - 1 comment

#66 - EELS signal loss for thick samples of SrTiO3

Issue - State: closed - Opened by DrPaulSharp almost 3 years ago - 11 comments

#65 - The SMatrix is different from scattering matrices

Issue - State: closed - Opened by jacobjma almost 3 years ago - 4 comments

#64 - reimplementing cartesian2polar() and polar2cartesian()

Pull Request - State: closed - Opened by jilekz almost 3 years ago - 1 comment

#63 - gpu memory

Issue - State: closed - Opened by erh3cq almost 3 years ago - 1 comment

#62 - SMatrix interpolation

Issue - State: closed - Opened by erh3cq almost 3 years ago - 2 comments

#61 - abTEM with Dask

Issue - State: closed - Opened by jacobjma almost 3 years ago - 44 comments

#60 - Minor issue with setting the sampling

Issue - State: closed - Opened by cophus almost 3 years ago - 10 comments

#59 - interfacing with real data

Issue - State: closed - Opened by urossgo almost 3 years ago - 2 comments

#58 - display the complex number with original magnitude and phase

Issue - State: closed - Opened by zezhong-zhang about 3 years ago - 3 comments

#57 - ValueError in abtem.potentials.soft_function()

Issue - State: closed - Opened by DrPaulSharp about 3 years ago - 2 comments

#56 - Defocus setting for STEM simulation

Issue - State: closed - Opened by luoye029 about 3 years ago - 1 comment

#55 - Bug fix: Use == for string comparison, never "is".

Pull Request - State: closed - Opened by schiotz about 3 years ago - 2 comments

#54 - Make FFTW multithreading optional (default: on)

Pull Request - State: closed - Opened by schiotz about 3 years ago - 5 comments

#53 - MTF Bug Fix

Pull Request - State: closed - Opened by matthewhelmi about 3 years ago - 1 comment

#52 - potential.sampling

Issue - State: closed - Opened by CGao-STEM about 3 years ago - 4 comments

#51 - PixelatedDetector setting

Issue - State: closed - Opened by yc9690 about 3 years ago - 1 comment

#50 - TypeError on write, cupy array to numpy array conversion

Issue - State: closed - Opened by din14970 about 3 years ago - 1 comment

#49 - sample rotate

Issue - State: closed - Opened by yc9690 about 3 years ago - 17 comments

#48 - Help tuning ePIE parameters for low dose 4DSTEM data

Issue - State: closed - Opened by GearoidM about 3 years ago - 3 comments

#47 - Diffuse scattering?

Issue - State: closed - Opened by hkazmi25 about 3 years ago - 3 comments

#46 - Add to_hyperspy() method to potentials

Pull Request - State: closed - Opened by GeriTopore about 3 years ago - 2 comments

#45 - Adding a notebook example for STEM probe propagation simulations

Pull Request - State: closed - Opened by GeriTopore about 3 years ago - 2 comments

#44 - why electron diffraction looks like square??

Issue - State: closed - Opened by hkazmi25 about 3 years ago - 5 comments

#43 - grid view size and plot intensity of peaks, Can it read .xyz file as well?

Issue - State: closed - Opened by hkazmi25 about 3 years ago - 1 comment

#42 - Error encountered when running abTEM with multiple GPUs

Issue - State: closed - Opened by GearoidM about 3 years ago - 1 comment

#41 - Add a function to calculate the redundancies of an ePIE reconstruction

Issue - State: closed - Opened by GearoidM about 3 years ago - 2 comments

#40 - Add GitHub workflows

Pull Request - State: closed - Opened by ericpre about 3 years ago

#39 - latest release on pypi

Issue - State: closed - Opened by ericpre about 3 years ago - 6 comments

#38 - How can we show potential image in a log scale?

Issue - State: closed - Opened by fzhuseux about 3 years ago - 1 comment

#37 - Updating CUDA and CuPy improved memory management

Issue - State: closed - Opened by GearoidM over 3 years ago - 2 comments

#36 - Simulation on 'discrete' systems like nanoparticles/clusters

Issue - State: closed - Opened by SnehaRV over 3 years ago - 5 comments

#35 - Problem running the program

Issue - State: closed - Opened by hkazmi25 over 3 years ago - 7 comments

#34 - change the thickness of slices/ control the number of slices

Issue - State: closed - Opened by hkazmi25 over 3 years ago - 1 comment

#33 - 3) If I wanted to remove any (one) layer of atoms (or slice) from multislice

Issue - State: closed - Opened by hkazmi25 over 3 years ago - 1 comment

#32 - 1) How can we define the grid size of atoms manually?

Issue - State: closed - Opened by hkazmi25 over 3 years ago - 2 comments

#31 - GPAW independent atom potentials with ionic form factors

Issue - State: open - Opened by jacobjma over 3 years ago - 2 comments

#30 - Overhaul of measurement module

Issue - State: closed - Opened by jacobjma over 3 years ago - 8 comments

#29 - Adding Hyperspy support

Pull Request - State: closed - Opened by CSSFrancis over 3 years ago - 3 comments

#28 - Incorrect handling of Fourier transform in MTF.

Pull Request - State: closed - Opened by schiotz over 3 years ago - 1 comment

#27 - Adding in Hyperspy/Pyxem Support

Issue - State: open - Opened by CSSFrancis over 3 years ago - 18 comments

#26 - How to use a 48 core server for abTEM

Issue - State: closed - Opened by w-markus over 3 years ago - 14 comments

#25 - orthogonalize_cell() requires exactly orthogonal axes

Issue - State: closed - Opened by DrPaulSharp over 3 years ago - 10 comments

#24 - Differing coordinate syntax for interpolate_line() vs. plt.plot()

Issue - State: closed - Opened by TomaSusi over 3 years ago - 12 comments

#23 - orthogonalize_cell() repeats structure unnecessarily (?)

Issue - State: closed - Opened by TomaSusi over 3 years ago - 12 comments

#22 - CFT -> CTF

Pull Request - State: closed - Opened by rosedaystory over 3 years ago - 1 comment

#21 - "Atoms are not orthogonal" error

Issue - State: closed - Opened by Chuqiao2333 over 3 years ago - 1 comment

#20 - raise error when use GPAW potential

Issue - State: closed - Opened by JizheCui over 3 years ago - 3 comments

#19 - multislice hangs when used with multiprocessing on Unix

Issue - State: closed - Opened by schiotz over 3 years ago - 4 comments

#18 - Quest for help on Probe customization

Issue - State: closed - Opened by xiongh15 over 3 years ago - 3 comments

#17 - a_max=None added to np.clip in Poisson_noise

Pull Request - State: closed - Opened by matthewhelmi over 3 years ago

#16 - Whether the segemented detectors can be rotated?

Issue - State: closed - Opened by xiongh15 over 3 years ago

#15 - errors happened when i tried to use segemented detecotor

Issue - State: closed - Opened by xiongh15 over 3 years ago - 1 comment

#14 - Modulation Transfer Function Class

Pull Request - State: closed - Opened by matthewhelmi over 3 years ago

#13 - Possible bug in poisson_noise

Issue - State: closed - Opened by MadsAW over 3 years ago - 2 comments

#12 - 4D STEM simulation

Issue - State: closed - Opened by CGao-STEM over 3 years ago - 2 comments

#11 - Tilt beam or specimen

Issue - State: closed - Opened by yy-ssang over 3 years ago - 4 comments

#10 - Changing the calculation device of GPU

Issue - State: closed - Opened by yy-ssang almost 4 years ago - 2 comments

#9 - Numba / Cuda issue

Issue - State: closed - Opened by alex-rakowski almost 4 years ago - 5 comments

#8 - Upgrade idea - Replace CuPy Kernels with Numba.ROCm functions ?

Issue - State: open - Opened by alex-rakowski almost 4 years ago - 14 comments

#7 - Incude license file in repository

Pull Request - State: closed - Opened by jan-janssen almost 4 years ago - 3 comments

#6 - License?

Issue - State: closed - Opened by jan-janssen almost 4 years ago - 1 comment

#4 - crop_to_center / _crop_to_center

Issue - State: closed - Opened by geoffwoollard about 4 years ago - 3 comments

#3 - apply_ctf not updating array

Issue - State: closed - Opened by geoffwoollard about 4 years ago - 2 comments

#2 - ctf

Issue - State: closed - Opened by geoffwoollard about 4 years ago - 8 comments