Ecosyste.ms: Issues

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GitHub / abTEM/abTEM issues and pull requests

#157 - Query re: calculating cross-sections

Issue - State: open - Opened by nravigroup 27 days ago - 6 comments

#156 - Computing potential from external charge density data

Issue - State: closed - Opened by leorubiola about 1 month ago - 4 comments

#155 - Using ionic peng parametrization

Issue - State: open - Opened by MichaelO1993 about 1 month ago - 1 comment

#154 - Lazy exit wave stack != computed exit wave stack

Issue - State: closed - Opened by alouiset about 2 months ago - 8 comments

#153 - Specify GPU device index

Issue - State: closed - Opened by shz224 about 2 months ago - 3 comments

#152 - Prism phase aberration part, axis metadata error

Issue - State: closed - Opened by qiuzanlin 2 months ago - 3 comments

#151 - beam tilt not taking effect when using a simple tilt value

Issue - State: closed - Opened by wdwzyyg 2 months ago - 2 comments

#150 - Charge density potential from another DFT code?

Issue - State: open - Opened by floatingCatty 3 months ago - 8 comments

#149 - PRISM algorithm (RuntimeError: Integration limit exceeded.)

Issue - State: closed - Opened by nmd5719 3 months ago - 3 comments

#148 - `sampling` docstring clarification

Issue - State: closed - Opened by matbryan52 3 months ago - 5 comments

#147 - Quickstart notebooks throwing error with 1.0.4 abTEM version

Issue - State: closed - Opened by utkarshp1161 4 months ago - 2 comments

#146 - Quickstart example not working (defocus='scherzer')

Issue - State: closed - Opened by annielucarv 4 months ago - 2 comments

#145 - Size of the CBED disk

Issue - State: closed - Opened by Chuqiao2333 4 months ago - 9 comments

#144 - Amorphous simulation with FrozenPhonon to do RDF analysis

Issue - State: closed - Opened by Loewe313 4 months ago - 4 comments

#143 - Unexpected Periodicity during Potential Building

Issue - State: open - Opened by Shephardnihy 4 months ago - 3 comments

#142 - Failing to `pip install abtem` on macOS

Issue - State: closed - Opened by TomaSusi 4 months ago

#140 - Inconsistency of the Probe generated by new version and old version

Issue - State: closed - Opened by yiranlus 5 months ago - 3 comments

#139 - How can I use abtem to read an experimental 4DSTEM data?

Issue - State: closed - Opened by PhysXu 5 months ago - 2 comments

#138 - When plotting profiles, the legend repeats the first entry

Issue - State: closed - Opened by MoniaNielsen 5 months ago - 11 comments

#137 - Unusual pattern when scanning a vacuum space

Issue - State: closed - Opened by cablecrossover 6 months ago - 3 comments

#134 - Scan error while using CustomScan

Issue - State: closed - Opened by vbo12345 7 months ago - 2 comments

#132 - Incompatability with some ASE built-in structures

Issue - State: closed - Opened by realitychemist 7 months ago - 2 comments

#131 - Quickstart example does not work (defocus='scherzer')

Issue - State: closed - Opened by schiotz 7 months ago - 1 comment

#129 - The example "run_STEM_MoS2.py" doesn't work.

Issue - State: open - Opened by Lynyanyu 8 months ago - 1 comment

#128 - difference between Images.show and plt.imshow the simulation result

Issue - State: closed - Opened by ikkihou 8 months ago - 1 comment

#126 - Merging Hyperspy bug-fix

Issue - State: closed - Opened by CSSFrancis 8 months ago - 3 comments

#125 - Thickness series

Issue - State: closed - Opened by elisathr 8 months ago - 2 comments

#124 - Issue with normalized intensity of HAADF images

Issue - State: closed - Opened by kalanadasunpriya 8 months ago - 9 comments

#123 - CTF 1D profile

Issue - State: closed - Opened by EthanJUCB 8 months ago - 2 comments

#122 - Calculate frozen phonons with Debye-Waller factor

Issue - State: open - Opened by shz224 8 months ago - 11 comments

#121 - pixel number in diffraction space

Issue - State: closed - Opened by Schuyler-Zixiao-Shi 9 months ago - 2 comments

#120 - Import issue on a non-GPU device with cupy installed

Issue - State: closed - Opened by M0hsend 9 months ago - 8 comments

#119 - to_tif missing tifffile package

Issue - State: closed - Opened by Schuyler-Zixiao-Shi 9 months ago - 2 comments

#118 - A question about indices

Issue - State: closed - Opened by LoeweWang 9 months ago - 1 comment

#117 - Bugs in the simulation of frozen phonons (abTEM 1.0.0beta35)

Issue - State: closed - Opened by startingbird 10 months ago - 1 comment

#114 - Zernike phase plate

Pull Request - State: closed - Opened by smribet 11 months ago - 4 comments

#113 - dependencies version issues

Issue - State: closed - Opened by smribet 11 months ago - 3 comments

#112 - orthogonalize_cell in example folder

Issue - State: closed - Opened by Schuyler-Zixiao-Shi 11 months ago - 2 comments

#110 - Attempt 2: TypeError fix [iam.py]

Pull Request - State: closed - Opened by EugenKozyrau 12 months ago - 1 comment

#109 - seeds=None - TypeError fix [iam.py]

Pull Request - State: closed - Opened by EugenKozyrau 12 months ago - 2 comments

#107 - Gaussian CBED Discs

Issue - State: closed - Opened by EoinScope 12 months ago - 6 comments

#106 - fixing binder

Pull Request - State: closed - Opened by alex-rakowski about 1 year ago - 1 comment

#105 - Issue with the HAADF detector

Issue - State: closed - Opened by kalanadasunpriya about 1 year ago - 3 comments

#104 - Issue with the HAADF detector

Issue - State: closed - Opened by kalanadasunpriya about 1 year ago

#103 - Fix numpy error

Pull Request - State: closed - Opened by CSSFrancis about 1 year ago - 2 comments

#102 - incompatible with numpy 1.24.2

Issue - State: closed - Opened by ikkihou about 1 year ago - 2 comments

#101 - Adding scan distortion in HAADF simulation process

Issue - State: closed - Opened by CGao-STEM about 1 year ago - 1 comment

#100 - error when using log_scale in diffract patterns

Issue - State: closed - Opened by Weslie0803 about 1 year ago - 1 comment

#99 - HAADF atomic dots are quite small

Issue - State: closed - Opened by lipai-ustc about 1 year ago - 3 comments

#98 - Inconsistency between ctf.show() and exit_wave.apply_ctf(ctf)?

Issue - State: closed - Opened by alouiset about 1 year ago - 6 comments

#97 - Flipping the CTF phase

Pull Request - State: closed - Opened by TomaSusi over 1 year ago - 2 comments

#96 - Beam tilt of SMatrix

Issue - State: closed - Opened by yy-ssang over 1 year ago - 1 comment

#95 - PIE Notebooks cleanup and probe-normalization bug fix

Pull Request - State: closed - Opened by gvarnavi over 1 year ago - 1 comment

#94 - TDS in CBED simulation

Issue - State: closed - Opened by Shephardnihy over 1 year ago - 3 comments

#93 - Clean up of the notebook update_quick_hrtem_and_saed.ipynb

Pull Request - State: closed - Opened by schiotz over 1 year ago - 1 comment

#92 - Ptychographic Iterative Engine Generalizations

Pull Request - State: closed - Opened by gvarnavi almost 2 years ago - 7 comments

#91 - Is it possible to apply Debye-Waller factor to describe thermal motion

Issue - State: closed - Opened by xiongh15 almost 2 years ago - 3 comments

#90 - Adding noise to 4D-STEM diffraciton pattern

Issue - State: closed - Opened by xiongh15 almost 2 years ago - 2 comments

#88 - Request - allow full size output for pixelated detector

Issue - State: closed - Opened by cophus almost 2 years ago - 3 comments

#87 - probe modification

Pull Request - State: closed - Opened by smribet almost 2 years ago - 1 comment

#86 - beam modification

Issue - State: closed - Opened by smribet almost 2 years ago - 21 comments

#85 - epie issue

Issue - State: closed - Opened by Hansen311 almost 2 years ago - 4 comments

#84 - PartitionedSMatrix has no ._generate_probes() method

Issue - State: closed - Opened by hisigns about 2 years ago - 2 comments

#83 - phase flipping and phase shift in CTF

Issue - State: closed - Opened by EthanJUCB about 2 years ago - 16 comments

#82 - CFT plot - X axis in reciprocal space

Issue - State: closed - Opened by JulioAzcarate about 2 years ago - 3 comments

#81 - Issue on Ag [111] HRTEM image simulation

Issue - State: closed - Opened by JulioAzcarate about 2 years ago - 3 comments

#80 - plot probe phase and amplitude

Issue - State: closed - Opened by smribet about 2 years ago - 5 comments

#79 - Fixed extent in 3D wavefunction example

Pull Request - State: closed - Opened by Quantumstud about 2 years ago - 1 comment

#78 - Issues on abtem-dask

Issue - State: closed - Opened by wuyao3561 over 2 years ago - 5 comments

#77 - issue on image simulation.

Issue - State: closed - Opened by yc9690 over 2 years ago - 9 comments

#76 - Abtem dask

Pull Request - State: closed - Opened by jacobjma over 2 years ago

#75 - Improve `to_hyperspy` methods

Pull Request - State: closed - Opened by ericpre over 2 years ago - 1 comment

#74 - `stack_measurements` fails when `calibrations` are a list

Issue - State: closed - Opened by sezelt over 2 years ago - 1 comment

#73 - Type mismatch in resampled pixelated detector on GPU

Issue - State: closed - Opened by sezelt over 2 years ago - 2 comments

#72 - Issue with GPU

Issue - State: closed - Opened by wuyao3561 over 2 years ago - 8 comments

#71 - Fix bug with streaming PRISM calculation

Pull Request - State: closed - Opened by ericpre over 2 years ago - 1 comment

#70 - Fix using correct python version in github CI

Pull Request - State: closed - Opened by ericpre over 2 years ago - 1 comment

#69 - Camera MTF

Issue - State: closed - Opened by TomaSusi over 2 years ago - 11 comments

#68 - Thickness series

Issue - State: closed - Opened by kotabata over 2 years ago - 2 comments

#67 - Import from collections.abc rather than collections

Pull Request - State: closed - Opened by jan-janssen over 2 years ago - 1 comment

#66 - EELS signal loss for thick samples of SrTiO3

Issue - State: closed - Opened by DrPaulSharp over 2 years ago - 11 comments

#65 - The SMatrix is different from scattering matrices

Issue - State: closed - Opened by jacobjma over 2 years ago - 4 comments

#64 - reimplementing cartesian2polar() and polar2cartesian()

Pull Request - State: closed - Opened by jilekz over 2 years ago - 1 comment

#63 - gpu memory

Issue - State: closed - Opened by erh3cq over 2 years ago - 1 comment

#62 - SMatrix interpolation

Issue - State: closed - Opened by erh3cq over 2 years ago - 2 comments

#61 - abTEM with Dask

Issue - State: closed - Opened by jacobjma over 2 years ago - 44 comments

#60 - Minor issue with setting the sampling

Issue - State: closed - Opened by cophus over 2 years ago - 10 comments

#59 - interfacing with real data

Issue - State: closed - Opened by urossgo over 2 years ago - 2 comments

#58 - display the complex number with original magnitude and phase

Issue - State: closed - Opened by zezhong-zhang almost 3 years ago - 3 comments

#57 - ValueError in abtem.potentials.soft_function()

Issue - State: closed - Opened by DrPaulSharp almost 3 years ago - 2 comments