Ecosyste.ms: Issues
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GitHub / ZJUFanLab/scCATCH issues and pull requests
#66 - Error when using custom marker dataframe
Issue -
State: open - Opened by niccolovono 5 months ago
- 1 comment
#65 - Cell type annotation for more than 3 subtypes
Issue -
State: open - Opened by gkc251 10 months ago
#64 - CellMatch reference database version
Issue -
State: open - Opened by februaryfang 10 months ago
#63 - Error in apply(ndata2, 1, mean) : dim(X) must have a positive length
Issue -
State: open - Opened by Namuhan33 about 1 year ago
#62 - Inconsistent logFC calculation method
Issue -
State: closed - Opened by februaryfang about 1 year ago
- 1 comment
#61 - no 'first' column in clu_ann
Issue -
State: closed - Opened by februaryfang about 1 year ago
- 1 comment
#60 - An error appeared when running findmarkergene()
Issue -
State: closed - Opened by ZhengYingqi-doctor over 1 year ago
- 1 comment
#59 - error from rev_gene function
Issue -
State: closed - Opened by februaryfang over 1 year ago
- 1 comment
#58 - scCATCH and Seurat
Issue -
State: closed - Opened by cathalgking over 1 year ago
- 8 comments
#57 - no method for coercing this S4 class to a vector
Issue -
State: closed - Opened by Elena983 over 1 year ago
- 2 comments
#56 - cluster cell match
Issue -
State: closed - Opened by antoine4ucsd over 1 year ago
- 2 comments
#55 - No matched potential marker genes in the matrix!
Issue -
State: closed - Opened by Elena983 over 1 year ago
- 9 comments
#54 - Issue: could not find function "scCATCH"
Issue -
State: closed - Opened by RYY0722 over 1 year ago
- 1 comment
#53 - Nasal epithelium: not matched with the tissue types in CellMatch database
Issue -
State: closed - Opened by olgabaranov over 1 year ago
- 1 comment
#52 - Can I work with seurat function FindAllMarkers
Issue -
State: closed - Opened by yugacandy about 2 years ago
- 1 comment
#51 - 更新版本后不能使用原来的Seurat格式的数据了吗
Issue -
State: closed - Opened by cherryamme about 2 years ago
- 1 comment
#50 - cluster_data format
Issue -
State: closed - Opened by xiaoxiaofuyou about 2 years ago
- 2 comments
#49 - ERROR : unable to find an inherited method for function ‘findmarkergene’ for signature ‘"Seurat"’
Issue -
State: closed - Opened by levinhein about 2 years ago
- 3 comments
#48 - Problem with functions findmarkergenes and scCATCH
Issue -
State: closed - Opened by celineyayifeng over 2 years ago
- 2 comments
#47 - An error for scCATCH
Issue -
State: closed - Opened by kelvinlee760948065 over 2 years ago
- 2 comments
#46 - Error when using findmarkergenes function
Issue -
State: closed - Opened by ivy-yuan over 2 years ago
- 4 comments
#45 - Cholmod error 'problem too large'
Issue -
State: closed - Opened by oldedios over 2 years ago
- 1 comment
#44 - Could not find function
Issue -
State: closed - Opened by VNa24 over 2 years ago
- 4 comments
#43 - How to download all cell markers in a certain tissue embbed in this package?
Issue -
State: closed - Opened by JiahuaQu over 2 years ago
- 2 comments
#42 - Warning: there are only 5 potential marker genes in CellMatch database for Mouse on Skin!
Issue -
State: closed - Opened by Tommaso12 over 2 years ago
- 2 comments
#41 - Tissue choice
Issue -
State: closed - Opened by lwtan90 over 2 years ago
- 1 comment
#40 - only 5 potential marker genes in CellMatch database for Mouse on Skin
Issue -
State: closed - Opened by Tommaso12 over 2 years ago
- 2 comments
#39 - All the same cell type when using scCATCH on Seurat FindAllMarkers
Issue -
State: closed - Opened by darlene003 over 2 years ago
- 1 comment
#38 - Interested in combining cancer and non-cancer
Issue -
State: closed - Opened by SimoniMD over 2 years ago
- 1 comment
#37 - Creating UMAP and PCA Plots after Cluster Annotation and Marker Identification
Issue -
State: closed - Opened by phoebe460 almost 3 years ago
- 1 comment
#36 - Cancer tissues for mouse
Issue -
State: closed - Opened by olgabaranov almost 3 years ago
- 1 comment
#35 - Error in scCATCH
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State: closed - Opened by m3lorra almost 3 years ago
- 1 comment
#34 - Error in rep(clu_num[i], (length(clu_num) - 1)) : invalid 'times' argument
Issue -
State: closed - Opened by mbartl13 almost 3 years ago
- 1 comment
#33 - Issue in findmarkergene function
Issue -
State: closed - Opened by s-yadav21 about 3 years ago
- 5 comments
#32 - Error in genedata1$Var1 : $ operator is invalid for atomic vectors
Issue -
State: closed - Opened by wolf5996 over 3 years ago
- 3 comments
#31 - new markers added to cellMatch or scCATCH
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State: closed - Opened by Jasonliu21 over 3 years ago
- 1 comment
#30 - Loosing a large number of genes when running findmarkergenes
Issue -
State: closed - Opened by nasiegel88 over 3 years ago
- 2 comments
#29 - How to deal with spatial data
Issue -
State: closed - Opened by ElyasMo over 3 years ago
- 2 comments
#28 - SCTransform compatibility with scCATCH
Issue -
State: closed - Opened by bounlu over 3 years ago
- 3 comments
#27 - scCATCH changed my seurat cluster ID
Issue -
State: closed - Opened by skyfall-lyc over 3 years ago
- 1 comment
#26 - scCATCH with Spatial data
Issue -
State: closed - Opened by raman91 over 3 years ago
- 1 comment
#25 - object not interpretable as a factor
Issue -
State: closed - Opened by lxwang326 over 3 years ago
- 2 comments
#24 - cancer type的参数设置问题
Issue -
State: closed - Opened by lxwang326 over 3 years ago
- 2 comments
#23 - Cluster with multiple cell types
Issue -
State: closed - Opened by lvweiming over 3 years ago
- 2 comments
#22 - cell type identification
Issue -
State: closed - Opened by lvweiming over 3 years ago
- 3 comments
Labels: good first issue
#21 - CellMatch database updates
Issue -
State: closed - Opened by nasiegel88 over 3 years ago
- 3 comments
#20 - findmarkergenes and cancer argument
Issue -
State: closed - Opened by c1au6i0 over 3 years ago
- 2 comments
#19 - Invalid times argument
Issue -
State: closed - Opened by hayfre over 3 years ago
- 2 comments
#18 - cannot install scCATCH
Issue -
State: closed - Opened by skim245 about 4 years ago
- 25 comments
Labels: good first issue
#17 - Minor fixes on paragraphs 71 & 77
Pull Request -
State: closed - Opened by kant about 4 years ago
#16 - Incorrect number of dimensions
Issue -
State: closed - Opened by plrlhb12 about 4 years ago
- 1 comment
#15 - file too large?
Issue -
State: closed - Opened by wfma about 4 years ago
- 2 comments
#14 - invalid character indexing
Issue -
State: closed - Opened by Cumol about 4 years ago
- 3 comments
Labels: bug
#13 - wrong number of dimensions
Issue -
State: closed - Opened by DanielAmsel about 4 years ago
- 2 comments
Labels: bug, good first issue
#12 - Invalid 'times' argument
Issue -
State: closed - Opened by DanielAmsel about 4 years ago
- 1 comment
#11 - fix the problem of large sparse matrix of Seurat
Pull Request -
State: closed - Opened by xuzhougeng about 4 years ago
- 1 comment
#10 - Custom CellMatch reference database
Issue -
State: closed - Opened by dweemx about 4 years ago
- 1 comment
#9 - How to prepare a Seurat object containing log10 normalized single-cell transcriptomic data matrix
Issue -
State: closed - Opened by wolfQK about 4 years ago
- 7 comments
#8 - Issue with scCATCH undefined columns selected
Issue -
State: closed - Opened by yaoxucpu about 4 years ago
- 5 comments
#7 - Workflow with SCTransfrom
Issue -
State: closed - Opened by jhb1980 about 4 years ago
- 1 comment
#6 - Error in genedata1$Var1 : $ operator is invalid for atomic vectors
Issue -
State: closed - Opened by rhart604 about 4 years ago
- 3 comments
#5 - Issue with scCATCH
Issue -
State: closed - Opened by rmondragon90 about 4 years ago
- 4 comments
#4 - not matched with the tissue types in CellMatch database!
Issue -
State: closed - Opened by william-swl about 4 years ago
- 2 comments
Labels: good first issue
#3 - Solution for [there is a clutster without a cell type after running scCATCH]
Issue -
State: closed - Opened by ZJUFanLab over 4 years ago
Labels: good first issue
#2 - Debug! Error in `$<-.data.frame`(`*tmp*`, avg_logfc, value = NaN) : replacement has 1 row, data has 0
Issue -
State: closed - Opened by ZJUFanLab over 4 years ago
- 1 comment
#1 - Debug-Error in `$<-.data.frame`(`*tmp*`, avg_logfc, value = NaN) : replacement has 1 row, data has 0
Issue -
State: closed - Opened by ZJUFanLab over 4 years ago