Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / YuLab-SMU/ggtree issues and pull requests

#542 - flip tree function

Issue - State: closed - Opened by antoine4ucsd over 2 years ago - 2 comments

#540 - Aligning tip labels in geom_tiplab results in error

Issue - State: closed - Opened by egonozer over 2 years ago - 3 comments

#539 - geom_hilight based on node name [&&NHX:S=CladeName]

Issue - State: open - Opened by francicco over 2 years ago - 1 comment

#538 - as.treedata creating label.x and label.y columns in some cases

Issue - State: closed - Opened by nick-youngblut over 2 years ago - 1 comment

#537 - gheatmap cuts the top row and last column

Issue - State: open - Opened by PSSchacksen over 2 years ago

#536 - data formatting for ggheatmap()

Issue - State: open - Opened by nick-youngblut over 2 years ago

#535 - Expanded docs for geom_tiplab()

Issue - State: open - Opened by nick-youngblut over 2 years ago - 3 comments

#534 - Error when trying to scale and collaps multiple clades on tree

Issue - State: open - Opened by janstrauss1 over 2 years ago - 4 comments

#533 - groupOTU adds an extra group called 0

Issue - State: open - Opened by MarekGierlinski over 2 years ago - 2 comments

#532 - feature: ggrepel-style placement of inset annotations

Issue - State: open - Opened by AlesBucek over 2 years ago

#531 - Heatmap with foldchange displayed

Issue - State: closed - Opened by suekn over 2 years ago

#530 - Unable to choose "encircle" for unrooted tree

Issue - State: open - Opened by soneill93237 over 2 years ago - 1 comment

#529 - how to draw stacked column chart

Issue - State: closed - Opened by ChenXi1201 over 2 years ago

#528 - Issue with angled unrooted tree label

Issue - State: open - Opened by PSSchacksen over 2 years ago - 1 comment

#527 - To better support the visualization of pvclust class using ggtree

Pull Request - State: closed - Opened by xiangpin over 2 years ago

#526 - update fortify for pvclust and hclust class-like

Pull Request - State: closed - Opened by xiangpin over 2 years ago

#525 - update fortify for pvclust

Pull Request - State: closed - Opened by xiangpin over 2 years ago - 2 comments

#524 - branch.length

Issue - State: closed - Opened by SolayMane over 2 years ago - 5 comments

#522 - as_ylab in geom_tiplab suppresses custom tip labels

Issue - State: closed - Opened by cwhittaker1000 over 2 years ago - 1 comment

#521 - Error in `vec_as_location()`:

Issue - State: open - Opened by Tsingsjeen over 2 years ago - 1 comment

#519 - Error install ggtree R4.1.3

Issue - State: closed - Opened by Kirito-Ma over 2 years ago - 2 comments

#518 - Error install ggtree R 4.2.1

Issue - State: closed - Opened by bullones over 2 years ago - 2 comments

#517 - adjust the height of hclust-like class with dendrogram layout

Pull Request - State: closed - Opened by xiangpin over 2 years ago - 3 comments

#516 - clone the plot environment before assigning layout

Pull Request - State: closed - Opened by xiangpin over 2 years ago

#515 - Limit BEAST 95% HPD node date estimates for geom_range plotting of error

Issue - State: closed - Opened by ksw9 over 2 years ago - 3 comments

#514 - fix bug of layoutEqualAngle

Pull Request - State: closed - Opened by xiangpin over 2 years ago

#513 - angle not equal in equal-angle layout

Issue - State: closed - Opened by li-yq over 2 years ago - 1 comment

#512 - warning_wrap export

Pull Request - State: closed - Opened by andrewrech over 2 years ago - 2 comments

#511 - Installation fails on master with missing, undefined object

Issue - State: closed - Opened by andrewrech over 2 years ago - 4 comments

#510 - how to use ggtree to draw fan-shaped tree with geological time scale

Issue - State: open - Opened by CretaceousBird over 2 years ago - 4 comments

#509 - gheatmap colnames in italics

Issue - State: open - Opened by Espinosa-Gongora over 2 years ago - 2 comments

#508 - geom_tiplab better compatible with dendrogram layout

Pull Request - State: closed - Opened by xiangpin over 2 years ago

#506 - Add outline to nodepies

Pull Request - State: closed - Opened by LPDagallier over 2 years ago - 1 comment

#486 - Error: ! Can't subset `.data` outside of a data mask context.

Issue - State: closed - Opened by KyleTDavid almost 3 years ago - 3 comments

#484 - ggtree collapsed clade+images

Issue - State: open - Opened by grenaud almost 3 years ago - 1 comment

#428 - R Session Aborted when calling ggtree()

Issue - State: open - Opened by lesserof2weevils over 3 years ago - 6 comments

#419 - cant combine ggtree with nodepie inset and geological bars from deeptime

Issue - State: closed - Opened by oscarIM over 3 years ago - 3 comments

#400 - Error: C stack usage is too close to the limit (with layout="daylight")

Issue - State: closed - Opened by bjmt almost 4 years ago - 11 comments

#389 - Curved clade labels in ggtree using geom_cladelab

Issue - State: open - Opened by megaraptor1 almost 4 years ago - 2 comments
Labels: enhancement

#378 - clade labels orientation problem with angle = "auto"

Issue - State: open - Opened by FelixErnst almost 4 years ago - 3 comments

#370 - 2D "Phylomorphospace" Plot Request

Issue - State: closed - Opened by jonnations about 4 years ago - 3 comments
Labels: enhancement

#308 - Show AA leters when using msaplot on a phylogeny

Issue - State: closed - Opened by MickAmest over 4 years ago - 4 comments

#307 - groupOTU fails with cryptic error

Issue - State: open - Opened by FabianRoger over 4 years ago - 3 comments

#271 - ggtree for dendrograms:MRCA function meets error

Issue - State: closed - Opened by LuffyLuffy about 5 years ago - 7 comments

#228 - Codeml does not produce mlc files, it combines with the output

Issue - State: open - Opened by kdbchau almost 6 years ago - 2 comments

#208 - Feature Request: Adding text/values to gheatmap layers

Issue - State: open - Opened by ghost over 6 years ago - 5 comments

#138 - Tip Labels cut off in facet_plot

Issue - State: closed - Opened by mattbawn over 7 years ago - 3 comments

#127 - Problems with groupOTU

Issue - State: closed - Opened by zh3ngq1n almost 8 years ago - 6 comments

#106 - Problem with label in "fan" plots

Issue - State: closed - Opened by AEgit about 8 years ago - 3 comments

#89 - Re-rooting tree with correct branch support labels

Issue - State: open - Opened by toddknutson over 8 years ago - 13 comments

#23 - collapse function not working

Issue - State: closed - Opened by ctSkennerton over 9 years ago - 4 comments
Labels: question

#12 - Could not find function "read.raxml"

Issue - State: closed - Opened by FluFighterBK over 9 years ago - 2 comments
Labels: installation