Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / YttriLab/A-SOID issues and pull requests

#89 - Error During Refinement Step: 'nonetype' object is not subscriptable

Issue - State: open - Opened by dongyuyand about 1 month ago
Labels: bug

#88 - Error with Create New Dataset Following Refinement

Issue - State: open - Opened by eacrummy about 1 month ago
Labels: bug

#87 - Adding vectorized graphics to plotly graphs

Issue - State: closed - Opened by JHartig 2 months ago - 2 comments
Labels: enhancement

#86 - Allowing "Likelihood value to filter" for pose files of 0.99

Issue - State: open - Opened by JHartig 2 months ago - 2 comments
Labels: enhancement

#84 - 'Key Error' in Refinement Step After the First Sample

Issue - State: closed - Opened by eacrummy 3 months ago - 5 comments
Labels: bug, question

#83 - Input for Active Learning and Reinforcement; Adding new annotations after manually refinement

Issue - State: closed - Opened by aidanpriceUON 3 months ago - 1 comment
Labels: question

#82 - Error during Prediction if Keypoints are excluded - Follow up to solved bug #73

Issue - State: open - Opened by Mijar007 3 months ago - 1 comment
Labels: bug

#81 - refine behavior and create new dataset

Issue - State: closed - Opened by koosjedr 3 months ago
Labels: bug

#80 - Question: Number of classes to manually label for A-SOID; including landmark keypoints

Issue - State: closed - Opened by eacrummy 3 months ago - 1 comment
Labels: good first issue, question

#78 - PyplotGlobalUse IS DEPRECATED

Issue - State: open - Opened by koosjedr 4 months ago - 1 comment
Labels: bug, Maintenance

#77 - Question about multi animal experiments with n > 2

Issue - State: closed - Opened by sommerc 4 months ago - 3 comments
Labels: good first issue, question

#76 - Patch 0.3.1.2

Pull Request - State: closed - Opened by JensBlack 4 months ago

#75 - Error during "Create labeled Video"

Issue - State: closed - Opened by Mijar007 4 months ago - 3 comments
Labels: bug, question

#74 - Error after loading 'Discover' config.ini in 'Extract Features' section

Issue - State: closed - Opened by Mijar007 4 months ago - 1 comment
Labels: documentation

#73 - Error during 'Upload Data' after excluding keypoints

Issue - State: closed - Opened by Mijar007 4 months ago - 1 comment
Labels: bug

#72 - Error during 'Discover'; missing data for behavior

Issue - State: closed - Opened by Mijar007 4 months ago - 1 comment
Labels: bug

#71 - Dev hotfix launch

Pull Request - State: closed - Opened by JensBlack 4 months ago

#70 - using A-SOID-0.3.1 when uploading data: index 6 is out of bounds for axis 1 with size 6

Issue - State: closed - Opened by kipkeller 4 months ago - 3 comments
Labels: bug, question

#69 - Errors during "Refine behavior" step

Issue - State: closed - Opened by Mijar007 4 months ago - 8 comments
Labels: bug, CALMS21

#68 - Streamlit Error: Please train a iteration-0 model in Active Learning step.

Issue - State: closed - Opened by Niels132 4 months ago - 5 comments
Labels: bug

#67 - SLEAP file - time not found in axis

Issue - State: closed - Opened by jverpeut 4 months ago - 6 comments
Labels: documentation, good first issue

#66 - Updated In-App Documentation and OpenMonkeyStudio support

Pull Request - State: closed - Opened by JensBlack 5 months ago
Labels: enhancement

#65 - Creat New Dataset gives: local variable 'new_features' referenced before assignment

Issue - State: closed - Opened by kipkeller 5 months ago - 9 comments
Labels: bug, documentation, question

#64 - WIN10 permission denied

Issue - State: closed - Opened by kipkeller 6 months ago - 4 comments
Labels: documentation, good first issue, question

#63 - embedding_output.sav

Issue - State: closed - Opened by pozel 6 months ago - 1 comment
Labels: documentation, good first issue, question

#62 - Raised streamlit version and fixed experimental_rerun to rerun to avo…

Pull Request - State: closed - Opened by JensBlack 7 months ago
Labels: Maintenance

#61 - 'hide_index' error message when predicting behaviors

Issue - State: closed - Opened by pozel 7 months ago - 4 comments
Labels: bug, question

#60 - Issue with extracting features.

Issue - State: closed - Opened by DavidGill159 7 months ago - 5 comments
Labels: documentation, good first issue

#59 - ERROR: Failed building wheel for hdbscan; Microsoft C++ Build tools missing

Issue - State: closed - Opened by JensBlack 7 months ago
Labels: documentation, good first issue, installation

#58 - [Future Warning] Deprecation of streamlit experimental_rerun

Issue - State: closed - Opened by JensBlack 7 months ago
Labels: Maintenance

#57 - PROJECTION CREATION: TypeError: '>' not supported between instances of 'float' and 'str'

Issue - State: closed - Opened by DavidGill159 7 months ago - 2 comments
Labels: bug, good first issue

#56 - AttributeError: module 'numpy' has no attribute 'long' ; Issues with Python 3.10.13

Issue - State: closed - Opened by DavidGill159 7 months ago - 6 comments
Labels: bug, installation

#55 - does not provide dev

Issue - State: closed - Opened by mauricev 7 months ago - 2 comments
Labels: bug, installation

#54 - streamlit fails to run

Issue - State: closed - Opened by mauricev 7 months ago - 2 comments
Labels: bug, installation

#53 - failed to build for numba, llvmlite on Silicon Mac (14.1.1)

Issue - State: closed - Opened by mauricev 8 months ago - 6 comments
Labels: question, installation, Mac

#52 - Major Update v0.3

Pull Request - State: closed - Opened by JensBlack 10 months ago - 1 comment
Labels: enhancement

#51 - Manual refinement

Pull Request - State: closed - Opened by JensBlack 10 months ago

#50 - Extract Features TypingError

Issue - State: closed - Opened by brian1000 12 months ago - 6 comments
Labels: bug

#49 - removed debug in discovery step

Pull Request - State: closed - Opened by JensBlack 12 months ago
Labels: bug, Maintenance

#48 - error on discover step: setting array element with sequence; Numpy deprecation v1.24.4

Issue - State: closed - Opened by vickerse1 12 months ago - 1 comment
Labels: bug, Maintenance

#47 - error running active learning classify on CaIMS21 dataset: "setting array element with a sequence"

Issue - State: closed - Opened by vickerse1 12 months ago - 3 comments
Labels: bug, Maintenance

#46 - fixed NumPy deprecation

Pull Request - State: closed - Opened by JensBlack 12 months ago
Labels: installation, Maintenance

#45 - TypeError when starting the A-SOID app

Issue - State: closed - Opened by islaxiao01 about 1 year ago - 2 comments
Labels: bug, installation

#44 - Upload data; SLEAP h5 file: "IndexError: list index out of range"

Issue - State: closed - Opened by salmon06 about 1 year ago - 2 comments
Labels: documentation, good first issue

#42 - IndexError: list index out of range - when importing new data

Issue - State: closed - Opened by JensBlack about 1 year ago - 3 comments
Labels: documentation, good first issue, question

#41 - Light/Dark mode: GUI changes when running app with different comments

Issue - State: closed - Opened by JensBlack about 1 year ago - 2 comments
Labels: documentation, good first issue, question

#40 - Permission denied error when attempting to preprocess CALMS21 (PAPER) test data set

Issue - State: closed - Opened by vickerse1 about 1 year ago - 3 comments
Labels: good first issue

#39 - fixed Altair version issue during installation

Pull Request - State: closed - Opened by JensBlack about 1 year ago
Labels: bug, installation, Maintenance

#38 - ModuleNotFoundError: No module named 'altair.vegalite.v4' - preventing initial run after installation

Issue - State: closed - Opened by vickerse1 about 1 year ago - 2 comments
Labels: installation

#37 - Behavioral snippets of predicted data

Issue - State: closed - Opened by karimabdelaal about 1 year ago - 1 comment
Labels: enhancement, question

#36 - Wrong Framerate during Data Import; ValueError while Extracting Features

Issue - State: closed - Opened by mitras1210 about 1 year ago - 17 comments
Labels: good first issue, question

#35 - Minimum Annotation Requirement

Issue - State: closed - Opened by mitras1210 about 1 year ago - 2 comments
Labels: good first issue, question

#34 - ValueError when using CalMS21 dataset

Issue - State: closed - Opened by mitras1210 about 1 year ago

#33 - Active Learning: ValueError: operands could not be broadcast together with shapes (7,) (6,)

Issue - State: closed - Opened by JensBlack about 1 year ago
Labels: bug, help wanted

#32 - Active learning step: ValueError: operands could not be broadcast together with shapes (10,) (9,)

Issue - State: closed - Opened by yikezhu1 about 1 year ago - 8 comments
Labels: bug, good first issue

#31 - Introduction of CLI and Script API functionality to asoid package

Pull Request - State: closed - Opened by JensBlack about 1 year ago
Labels: enhancement

#30 - Extract features - inconsistent number of samples

Issue - State: closed - Opened by nich999 about 1 year ago - 2 comments
Labels: bug, good first issue

#29 - Prediction Step: After training with calms21: unable to input new dataset

Issue - State: closed - Opened by zhenyuan992 about 1 year ago - 5 comments
Labels: documentation, good first issue

#27 - Expanding assigments to noise during export to new project (Discovery step)

Pull Request - State: closed - Opened by JensBlack about 1 year ago
Labels: bug, enhancement

#26 - FutureWarning for scipy version >= 1.11.0

Issue - State: closed - Opened by JensBlack about 1 year ago - 1 comment
Labels: Maintenance

#25 - updated to fit upcoming Pypi release

Pull Request - State: closed - Opened by JensBlack about 1 year ago
Labels: enhancement

#24 - After project creation: unable to proceed without config file when going to feature extraction (next step)

Issue - State: closed - Opened by zhenyuan992 about 1 year ago - 1 comment
Labels: documentation, good first issue

#23 - fixed theme and config import when starting app with "asoid app"

Pull Request - State: closed - Opened by JensBlack about 1 year ago
Labels: bug

#22 - Enforcing darkmode when starting app using cli

Issue - State: closed - Opened by JensBlack about 1 year ago
Labels: enhancement

#21 - Upgrade to Streamlit v1.20.0

Pull Request - State: closed - Opened by JensBlack about 1 year ago
Labels: enhancement

#20 - Extended Viewer functions (single file)

Pull Request - State: closed - Opened by JensBlack about 1 year ago
Labels: enhancement

#19 - Integrate motion energy calculation and view feature

Pull Request - State: closed - Opened by JensBlack over 1 year ago
Labels: enhancement

#18 - add additional viewer functionality

Issue - State: closed - Opened by JensBlack over 1 year ago
Labels: enhancement

#17 - add motion energy workflow

Issue - State: closed - Opened by JensBlack over 1 year ago
Labels: enhancement

#16 - add video frame extraction workflow

Issue - State: closed - Opened by runninghsus over 1 year ago
Labels: enhancement

#15 - included import of tsv files for easier import from boris

Pull Request - State: closed - Opened by JensBlack over 1 year ago
Labels: enhancement

#14 - Error with installing packages

Issue - State: closed - Opened by samarth-wustl over 1 year ago - 1 comment
Labels: duplicate, installation

#13 - feature extraction

Issue - State: closed - Opened by colinyong over 1 year ago - 9 comments
Labels: bug, good first issue

#12 - [Feature Request] Import A-SOID data to jupyter for custom plotting

Issue - State: open - Opened by Wulin-Tan over 1 year ago - 2 comments
Labels: enhancement

#11 - fixed exclusion of other issue due to import type issue

Pull Request - State: closed - Opened by JensBlack over 1 year ago

#10 - Active Learning step: ValueError: Input X contains NaN

Issue - State: closed - Opened by topohl over 1 year ago - 4 comments
Labels: bug

#9 - Failed building wheel for hdbscan

Issue - State: closed - Opened by karinmcode over 1 year ago - 2 comments
Labels: installation

#8 - Input variables with inconsistent numbers of samples

Issue - State: closed - Opened by RafaelParker34 over 1 year ago - 5 comments
Labels: bug, enhancement, good first issue

#7 - Update to v 0.2.0

Pull Request - State: closed - Opened by JensBlack over 1 year ago
Labels: enhancement

#6 - updated data import info

Pull Request - State: closed - Opened by JensBlack over 1 year ago

#5 - updated installation process

Pull Request - State: closed - Opened by JensBlack over 1 year ago

#4 - Data import issues

Issue - State: closed - Opened by kapilsaxena33 over 1 year ago - 9 comments
Labels: bug, good first issue

#3 - ModuleNotFoundError: No module named 'hdbscan'

Issue - State: closed - Opened by kapilsaxena33 over 1 year ago - 3 comments
Labels: installation

#2 - Ubuntu installation Conda File

Pull Request - State: closed - Opened by nickdelgrosso over 1 year ago

#1 - updated next/previous step buttons to fit updated naming of steps

Pull Request - State: closed - Opened by JensBlack over 1 year ago