Ecosyste.ms: Issues

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GitHub / YosefLab/velovi issues and pull requests

#31 - I found a bug

Issue - State: open - Opened by Andymare1994 5 months ago - 1 comment

#30 - Reconstruction likelihood

Issue - State: open - Opened by ttgump 7 months ago

#29 - Release 0.4 after scvi-tools 1.2 release

Issue - State: open - Opened by martinkim0 7 months ago - 2 comments

#28 - chore(test): remove import test

Pull Request - State: closed - Opened by martinkim0 7 months ago

#27 - chore(misc): update readme with deprecation warning

Pull Request - State: closed - Opened by martinkim0 7 months ago

#26 - chore(release): bump version to 0.4.0

Pull Request - State: closed - Opened by martinkim0 7 months ago

#25 - chore(release): bump version to 0.3.1

Pull Request - State: closed - Opened by martinkim0 7 months ago

#24 - fix: replace `use_gpu` with `accelerator` and `devices`

Pull Request - State: closed - Opened by martinkim0 7 months ago - 1 comment

#23 - unexpected keyword argument 'use_gpu'

Issue - State: closed - Opened by bobermayer 7 months ago - 4 comments

#22 - Parameter error for dataloader

Issue - State: open - Opened by weir12 11 months ago

#21 - Root cells

Issue - State: open - Opened by ryf0810 12 months ago

#20 - CPUAccelerator should be an int > 0

Issue - State: closed - Opened by ryf0810 12 months ago - 1 comment

#19 - A bug in tutorial

Issue - State: open - Opened by HelloWorldLTY about 1 year ago

#18 - Running tutorial and dependencies

Issue - State: open - Opened by leonardogolinelli about 1 year ago

#17 - dependencies: change python-igraph to igraph

Pull Request - State: open - Opened by szhorvat about 1 year ago

#16 - Updates for `scvi-tools>=1.0`

Pull Request - State: closed - Opened by adamgayoso over 1 year ago - 2 comments

#15 - Small mistake in tutorial

Issue - State: open - Opened by SarahAncheta over 1 year ago

#14 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#13 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] over 1 year ago - 1 comment

#12 - update docs, remove unused model fns

Pull Request - State: closed - Opened by adamgayoso over 1 year ago - 1 comment

#11 - Pre commit

Pull Request - State: closed - Opened by adamgayoso over 1 year ago - 1 comment

#10 - fixes and scvi tools version

Pull Request - State: closed - Opened by adamgayoso over 1 year ago - 1 comment

#9 - get_gene_likelihood fails due to tensors on different devices

Issue - State: closed - Opened by sfortma2 over 1 year ago

#8 - Update `pyproject.toml`

Pull Request - State: closed - Opened by WeilerP almost 2 years ago - 1 comment

#7 - Update required scVelo version

Issue - State: closed - Opened by WeilerP almost 2 years ago - 1 comment

#6 - VeloVI applied to single-nuclei datasets

Issue - State: closed - Opened by ccruizm almost 2 years ago - 1 comment

#5 - Add `_utils.py::get_permutation_scores`

Pull Request - State: closed - Opened by WeilerP about 2 years ago - 2 comments

#4 - Precomputed permutation scores

Issue - State: closed - Opened by WeilerP about 2 years ago

#3 - Add option to fit time-dep. transcription

Pull Request - State: closed - Opened by WeilerP about 2 years ago - 1 comment

#2 - Update calculation of permutation score

Pull Request - State: closed - Opened by WeilerP about 2 years ago

#1 - Time-dependant transcription rate

Pull Request - State: closed - Opened by adamgayoso about 2 years ago - 1 comment