YosefLab/mrvi issues and pull requests

#105 - Reproducibility issue of MRVI

Issue - State: open - Opened by Nusob888 2 months ago

#104 - Loading saved model fails

Issue - State: open - Opened by VladimirShitov 4 months ago - 3 comments

#103 - Add deprecation warnings for 1.0.1

Pull Request - State: closed - Opened by justjhong 5 months ago

#102 - Remove pd.Series accession warnings

Issue - State: closed - Opened by PierreBoyeau 5 months ago - 1 comment

#101 - Rm statsmodels dep

Issue - State: closed - Opened by PierreBoyeau 5 months ago - 1 comment

#100 - Bug fix for compute_local_sample_distances

Pull Request - State: closed - Opened by justjhong 6 months ago - 1 comment
Labels: cuda tests

#99 - Fix de/da bug for non ordered int sample keys

Pull Request - State: closed - Opened by justjhong 6 months ago
Labels: cuda tests

#98 - DE/DA method refactor

Pull Request - State: closed - Opened by justjhong 6 months ago - 1 comment
Labels: cuda tests

#97 - Nextflow/snakemake pipeline for automated reporting

Issue - State: open - Opened by PierreBoyeau 7 months ago

#96 - Produce user-guide and tutorial

Issue - State: closed - Opened by PierreBoyeau 7 months ago - 2 comments

#95 - Reformat and simplify DA pipeline

Issue - State: closed - Opened by PierreBoyeau 7 months ago

#94 - Rename DE module

Issue - State: closed - Opened by PierreBoyeau 7 months ago

#93 - [ci] remove prereleases flag from tests

Pull Request - State: closed - Opened by martinkim0 7 months ago

#92 - Normalization does not clip distances at 0

Pull Request - State: closed - Opened by justjhong 7 months ago - 1 comment
Labels: cuda tests

#91 - z_u_prior false should remove the prior

Pull Request - State: closed - Opened by justjhong 7 months ago - 1 comment
Labels: cuda tests

#90 - minimal user guide

Pull Request - State: closed - Opened by PierreBoyeau 8 months ago

#89 - Prepare for v1.0.0b1

Pull Request - State: closed - Opened by justjhong 8 months ago
Labels: cuda tests

#88 - Rm deprecated

Pull Request - State: closed - Opened by PierreBoyeau 8 months ago

#87 - Add back sparse and xarray deps, lower bound scvi-tools

Pull Request - State: closed - Opened by martinkim0 8 months ago

#86 - Add install from scvi-tools main to workflows

Pull Request - State: closed - Opened by martinkim0 8 months ago

#84 - Reduce mem footprint of `get_latent_representation`

Pull Request - State: closed - Opened by martinkim0 8 months ago - 2 comments
Labels: all tests

#83 - Rename scvi-v2 to mrvi

Pull Request - State: closed - Opened by martinkim0 8 months ago

#81 - Release checklist for preprint tag

Issue - State: closed - Opened by martinkim0 8 months ago

#80 - Increase lower bound on scvi-tools, remove deps

Pull Request - State: closed - Opened by martinkim0 8 months ago

#77 - ablation

Pull Request - State: closed - Opened by PierreBoyeau about 1 year ago - 1 comment

#76 - Update _model.py

Pull Request - State: closed - Opened by canergen about 1 year ago - 1 comment

#73 - Extended sets

Pull Request - State: closed - Opened by PierreBoyeau over 1 year ago