Ecosyste.ms: Issues

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GitHub / YingfanWang/PaCMAP issues and pull requests

#81 - Update PaCMAP Rust description

Pull Request - State: closed - Opened by hadronzoo 9 days ago - 1 comment

#80 - fit_transform hangs for low number of samples

Issue - State: closed - Opened by fredmell 12 days ago - 3 comments
Labels: bug

#79 - remove setuptools as dependency

Pull Request - State: closed - Opened by mathematicalmichael 13 days ago - 2 comments

#78 - Release 0.7.4

Pull Request - State: closed - Opened by hyhuang00 16 days ago

#77 - "Killed" happening while fitting large dataset

Issue - State: closed - Opened by FlimFlamm 4 months ago - 7 comments

#76 - what about a cuml implementation?

Issue - State: open - Opened by raulcarlomagno 5 months ago
Labels: enhancement

#75 - Two possible bugs in `sample_FP_pair` and `sample_FP_pair_deterministic`

Issue - State: closed - Opened by Wainberg 5 months ago - 4 comments
Labels: bug

#74 - Segmentation fault due to IndexError

Issue - State: closed - Opened by zeitderforschung 5 months ago - 3 comments
Labels: bug

#73 - Can't find mammoth_data.csv

Issue - State: closed - Opened by wichaidi 6 months ago - 2 comments

#72 - Crashing when fitting PaCMAP

Issue - State: closed - Opened by krishnaxamin 6 months ago - 13 comments
Labels: bug

#71 - Update basic_demo.py

Pull Request - State: closed - Opened by brooksambrose 7 months ago - 1 comment

#70 - what is your closest competitor ?

Issue - State: closed - Opened by Sandy4321 7 months ago

#69 - Inconsistent gradient calculations

Issue - State: closed - Opened by michael-long88 7 months ago - 1 comment

#68 - Support changing number of iterations for each optimization stage

Pull Request - State: closed - Opened by FelSiq 10 months ago - 1 comment

#66 - Default n_neighbors parameter does not match documentation in README

Issue - State: closed - Opened by scottclowe 11 months ago - 1 comment
Labels: documentation

#65 - Required characteristics of the input data

Issue - State: closed - Opened by TJonCooper 11 months ago - 1 comment

#64 - replace deprecated pkg_resources with importlib

Pull Request - State: closed - Opened by considerate 12 months ago

#63 - Switch from numba compilation to vectorized code

Pull Request - State: closed - Opened by aarmey 12 months ago - 5 comments

#62 - init with user specified matrix

Issue - State: open - Opened by LJK1991 about 1 year ago - 6 comments
Labels: bug

#61 - Accept Sparse input scipy

Issue - State: open - Opened by arita37 about 1 year ago
Labels: enhancement

#60 - Cosine distance has a call to sqrt

Issue - State: closed - Opened by danr about 1 year ago - 2 comments
Labels: question

#59 - Implementation with PyTorch

Issue - State: open - Opened by Sang-Yeop-Yeo about 1 year ago - 1 comment
Labels: enhancement

#58 - [Bug] Problem with angular metric

Issue - State: closed - Opened by aluo-x about 1 year ago - 3 comments
Labels: question

#57 - angular distance embedding inconsistencies

Issue - State: open - Opened by pgajer about 1 year ago - 1 comment
Labels: question

#56 - Error running test code

Issue - State: closed - Opened by morgansobol over 1 year ago - 5 comments

#55 - build fails without strict numba requirement

Issue - State: closed - Opened by gordonrix over 1 year ago - 2 comments

#54 - Failed to install PaCMAP with pip

Issue - State: closed - Opened by Thiziri-Hafir over 1 year ago - 4 comments

#53 - Global?

Pull Request - State: open - Opened by RichardScottOZ over 1 year ago - 2 comments

#52 - Metric learning with PaCMAP?

Issue - State: open - Opened by neuro30 over 1 year ago - 2 comments
Labels: enhancement

#51 - Add PaCMAP to Conda-forge please

Issue - State: closed - Opened by helios1014 almost 2 years ago - 2 comments

#50 - Is `inverse_transform` possible with PaCMAP?

Issue - State: closed - Opened by MattWenham almost 2 years ago - 1 comment

#49 - speed up processing large dataset

Issue - State: closed - Opened by richardehughes almost 2 years ago - 1 comment

#47 - Large-scale PaCMAP

Issue - State: closed - Opened by robvanvolt almost 2 years ago - 5 comments
Labels: question

#46 - Error when the number of instances grow to large

Issue - State: closed - Opened by nikobent almost 2 years ago - 2 comments

#45 - Save a PaCMAP model

Issue - State: closed - Opened by chipsin66 about 2 years ago - 3 comments

#44 - Segmentation fault when running model in loop

Issue - State: closed - Opened by lennartnicolas over 2 years ago - 1 comment
Labels: bug

#43 - inverse_transform() in PaCMAP

Issue - State: closed - Opened by anv-ch over 2 years ago - 1 comment

#42 - Rainbow Plots For Bad Loss!

Issue - State: closed - Opened by HuShenS over 2 years ago - 1 comment

#41 - transform() doesn't work

Issue - State: closed - Opened by anniepank over 2 years ago - 4 comments
Labels: bug

#40 - Import performance

Issue - State: closed - Opened by AndreasGerken over 2 years ago - 2 comments
Labels: enhancement

#39 - Readme n_dims vs. n_components

Issue - State: closed - Opened by AndreasGerken over 2 years ago - 1 comment
Labels: documentation

#38 - allow test/query data to be used with Transform() API call

Issue - State: open - Opened by Stevod over 2 years ago - 1 comment
Labels: documentation

#37 - Possible bug: plotting intermediate snapshots

Issue - State: closed - Opened by pirao over 2 years ago - 3 comments
Labels: bug

#36 - PaCMAP is stochastic with sparse data even if random seed is set

Issue - State: closed - Opened by tammandres over 2 years ago - 7 comments
Labels: bug

#35 - Multiprocessor support

Issue - State: closed - Opened by goodrahstar over 2 years ago - 5 comments

#34 - Storing PaCMAP on DB?

Issue - State: open - Opened by guilherme-marchezini over 2 years ago - 5 comments
Labels: enhancement

#33 - Early stopping in third phase of training

Issue - State: open - Opened by nfultz over 2 years ago - 1 comment
Labels: enhancement

#32 - About ILSVRC 2012 dataset result

Issue - State: closed - Opened by liuyhlinux over 2 years ago - 1 comment

#31 - transform() only produces constant when save_tree = True

Issue - State: closed - Opened by nfultz over 2 years ago - 3 comments
Labels: bug

#30 - Sample code does not work

Issue - State: closed - Opened by CoteDave over 2 years ago - 2 comments

#29 - fix sample_pairs missing argument

Pull Request - State: closed - Opened by mjdall over 2 years ago - 2 comments

#28 - WIP fix path to source code folder in setup.cfg

Pull Request - State: closed - Opened by nfultz over 2 years ago - 3 comments

#27 - WIP fix path to source code folder in setup.cfg

Pull Request - State: closed - Opened by nfultz over 2 years ago

#26 - Nearest neighbors on knowledge graph embedding PaCMAP reduction did not work well

Issue - State: closed - Opened by KnutJaegersberg over 2 years ago - 7 comments
Labels: question

#25 - Include package metadata in GH repo

Issue - State: closed - Opened by nfultz over 2 years ago - 3 comments
Labels: question

#24 - bugfix - shape not set on None

Pull Request - State: closed - Opened by nfultz over 2 years ago - 1 comment

#23 - Issue Inputting Dataframe Data into PaCMAP

Issue - State: closed - Opened by AlexRichardson2001 over 2 years ago - 5 comments
Labels: help wanted

#22 - Initialize `intermediate_states` with `n_dims`

Pull Request - State: closed - Opened by kemaleren almost 3 years ago - 1 comment

#20 - Adding adjacent data for embedding

Pull Request - State: closed - Opened by WiestDaessle almost 3 years ago

#19 - Stochasticity found after setting a random seed

Issue - State: closed - Opened by ian425 almost 3 years ago - 9 comments

#18 - Enhancement requests. Intermediate manifold intersection and custom distance metrics

Issue - State: open - Opened by rhysnewell about 3 years ago - 8 comments
Labels: enhancement

#17 - Unable to install PaCMAP

Issue - State: closed - Opened by mohamedsidina about 3 years ago

#16 - Error setting random_state in PaCMAP

Issue - State: closed - Opened by ian425 about 3 years ago - 6 comments

#15 - Doesn't work in sklearn's Pipeline

Issue - State: closed - Opened by jochenater about 3 years ago - 8 comments

#14 - Random State is required in Usage example,

Issue - State: closed - Opened by iolaizola over 3 years ago - 4 comments

#13 - Paper already peer reviewed and published?

Issue - State: closed - Opened by robvanvolt over 3 years ago - 1 comment

#12 - Is there a way of providing user-defined distance matrices to PaCMAP

Issue - State: open - Opened by JoanaMPereira over 3 years ago - 4 comments
Labels: enhancement

#11 - AttributeError: module 'pacmap' has no attribute 'PaCMAP'

Issue - State: closed - Opened by kengcher over 3 years ago - 9 comments

#10 - Enhancement request, implement fractional distance

Issue - State: open - Opened by ivan-marroquin over 3 years ago - 2 comments

#9 - Dealing with challenging data sets

Issue - State: open - Opened by ivan-marroquin over 3 years ago - 4 comments

#8 - Seems there is no transform method available ?

Issue - State: closed - Opened by tlunati over 3 years ago - 10 comments
Labels: enhancement

#7 - Error with only a few data points

Issue - State: closed - Opened by zeitderforschung over 3 years ago - 2 comments
Labels: bug

#6 - gpu support

Issue - State: closed - Opened by analyticray over 3 years ago - 1 comment

#5 - Clarify options for init argument

Issue - State: closed - Opened by cciccole over 3 years ago - 2 comments

#4 - Support externally supplied nearest neighbors

Issue - State: closed - Opened by cciccole over 3 years ago - 4 comments

#3 - use the same data but get different result

Issue - State: closed - Opened by haha010508 almost 4 years ago - 7 comments

#2 - Update README example to display projection

Pull Request - State: closed - Opened by bhoov almost 4 years ago - 1 comment

#1 - Example not working after `pip install` with requirements

Issue - State: closed - Opened by bhoov almost 4 years ago - 3 comments