Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / YinLiLin/CMplot issues and pull requests

#127 - Is it possible to save the file as a vector image?

Issue - State: open - Opened by anbai106 30 days ago - 1 comment

#126 - Density Plot x-axis ticks

Issue - State: open - Opened by NattyandMinnie about 1 month ago - 1 comment

#125 - Error in CMplot(): 'amplify' is FALSE.

Issue - State: open - Opened by DaWeMoYe about 2 months ago - 3 comments

#124 - Error in p values should be at range of (0, 1).

Issue - State: open - Opened by Liny2333 about 2 months ago - 3 comments

#123 - Error in plot.new()

Issue - State: open - Opened by dqq0404 3 months ago - 1 comment

#121 - I have only one-layer of circle plot

Issue - State: open - Opened by seisland1 3 months ago - 1 comment

#120 - Chromosome order in marker density plot

Issue - State: open - Opened by pacomejudon 3 months ago - 1 comment

#119 - how to get rid of grey shadows when applying threshold

Issue - State: open - Opened by biomedswe 4 months ago - 2 comments

#118 - p values should be at range of (0, 1).

Issue - State: open - Opened by wangfei20201127 4 months ago - 6 comments

#117 - Adding tags to significant points in multitrait / multitrack QQ plots

Issue - State: open - Opened by evatosco 5 months ago - 2 comments

#116 - Error in Pmap[, 1] : incorrect number of dimensions

Issue - State: open - Opened by elzadgeorge 5 months ago - 2 comments

#115 - bin.size doesn't look right

Issue - State: open - Opened by niexiaoqing 6 months ago - 3 comments

#114 - how to alter multiple track qq plots

Issue - State: open - Opened by srad26 7 months ago - 1 comment

#113 - how to highlight snp in outlined circle

Issue - State: open - Opened by showers14 8 months ago

#112 - p values should be at range of (0, 1).

Issue - State: open - Opened by ssieub 9 months ago - 6 comments

#111 - Error: related cex

Issue - State: open - Opened by seisland1 9 months ago - 1 comment

#110 - The 'cex' value is incorrect

Issue - State: open - Opened by Cheng7Cloud 9 months ago - 1 comment

#107 - Error

Issue - State: open - Opened by royalzeng 10 months ago - 2 comments

#106 - Chromosome label error

Issue - State: closed - Opened by cfz1998 10 months ago - 2 comments

#105 - How to draw a mirror manhattan plot with CMplot?

Issue - State: open - Opened by koujiaodahan 10 months ago - 1 comment

#103 - SNP density plot

Issue - State: open - Opened by deepti100rao 10 months ago - 5 comments

#101 - Remove y-axis in circular mahattan plot

Issue - State: closed - Opened by GuoanQi1996 12 months ago - 3 comments

#100 - multraits parameter missing

Issue - State: open - Opened by Pancreaticpathway 12 months ago - 1 comment

#99 - Overlap between windows of DNA density map

Issue - State: open - Opened by liuyadong2023 12 months ago - 2 comments

#98 - Long Chromosome name Unable to display in full

Issue - State: closed - Opened by neversadd 12 months ago

#97 - colors of significant SNPs match to multiple traits

Issue - State: closed - Opened by WeiYang-BAI 12 months ago - 1 comment

#96 - Modifying Color Legend and Density Values in SNP Density Plot

Issue - State: open - Opened by 915813786 about 1 year ago - 3 comments

#95 - Removing y axis grid lines

Issue - State: open - Opened by mbond0718 about 1 year ago - 1 comment

#94 - Highlight text the higest SNP

Issue - State: closed - Opened by eightYao2 about 1 year ago - 2 comments

#93 - Run Q-Q plot cause many time

Issue - State: closed - Opened by DamienTan about 1 year ago - 2 comments

#92 - Change the background color for circle Manhattan plot

Issue - State: closed - Opened by JingjingBai2021 about 1 year ago - 1 comment

#91 - Circular manhattan plot label trait name

Issue - State: closed - Opened by eightYao2 about 1 year ago - 4 comments

#90 - Add option to draw multiple x axes for multi-rect plot

Pull Request - State: closed - Opened by mnahinkhan about 1 year ago - 1 comment

#89 - Track-specific highlighting not possible anymore after update

Issue - State: open - Opened by erikstricker about 1 year ago - 1 comment

#88 - filename too long in jpeg

Issue - State: open - Opened by SilvijaSilvija about 1 year ago - 3 comments

#87 - Output bin file?

Issue - State: open - Opened by space-beaver over 1 year ago

#86 - No highlight.text in Circular manhattan plot

Issue - State: open - Opened by Wetermolen over 1 year ago - 3 comments

#85 - Error: p values should be at range of (0, 1).

Issue - State: open - Opened by kaanokay over 1 year ago - 8 comments

#84 - Is there a way to change bold of axis ticks and axis labels?

Issue - State: open - Opened by wsweishang over 1 year ago - 5 comments

#83 - Strange x-axis in my Manhattan plot

Issue - State: open - Opened by lebronzhong over 1 year ago - 3 comments

#82 - Multitrack threshold not coloring/sizing as expected

Issue - State: closed - Opened by michaelofrancis over 1 year ago - 6 comments

#81 - CMplot.r

Pull Request - State: closed - Opened by pagnasok over 1 year ago

#80 - How to exclude or move location of trait name in multitrack Manhattan

Issue - State: open - Opened by squirrelB over 1 year ago - 3 comments

#79 - highlighted SNPs in different color

Issue - State: open - Opened by beifanglingyang almost 2 years ago - 1 comment

#78 - Set Y Axis Break

Issue - State: open - Opened by Steven-Shixq almost 2 years ago - 1 comment

#76 - Manhattan Plot: Highlighted points not matching those given in vector

Issue - State: open - Opened by danphillips28 almost 2 years ago - 1 comment

#75 - highlighted SNPs in different color

Issue - State: closed - Opened by BirongZhang almost 2 years ago - 2 comments

#74 - Weird grey lines

Issue - State: closed - Opened by michaelofrancis almost 2 years ago - 5 comments

#72 - SNP Density Plot question on bin size

Issue - State: open - Opened by sanyalab about 2 years ago - 1 comment

#71 - Save plot to object

Issue - State: closed - Opened by hatre0 about 2 years ago - 1 comment

#70 - Labelling all chromosomes

Issue - State: open - Opened by hatre0 about 2 years ago - 7 comments

#69 - How can I draw no-p-value trait?

Issue - State: open - Opened by Maximus0212 about 2 years ago - 1 comment

#68 - How to put highlighted text just above the points?

Issue - State: open - Opened by YiweiNiu about 2 years ago - 10 comments

#67 - Error in FUN(left, right) : non-numeric argument to binary operator

Issue - State: open - Opened by CGaliaCamps about 2 years ago - 1 comment

#66 - How can I change the presentation of the legend?

Issue - State: open - Opened by zhouweixi over 2 years ago - 1 comment

#65 - Parameterize point transparency

Pull Request - State: closed - Opened by mschilli87 over 2 years ago

#64 - Multi-trait Manhattan plot: Reverse point sampling

Pull Request - State: closed - Opened by mschilli87 over 2 years ago - 1 comment

#63 - methylation and demethylation manhattan points

Issue - State: open - Opened by LandiMi2 over 2 years ago - 4 comments

#62 - List of values for highlight.pch?

Issue - State: closed - Opened by michaelofrancis over 2 years ago - 4 comments

#61 - Moving from VCF file to `pig60K` data format

Issue - State: open - Opened by Jokendo-collab over 2 years ago - 3 comments

#60 - Multi_tracks plotting does not work

Issue - State: closed - Opened by shanwai1234 over 2 years ago

#59 - Multitracks plots

Issue - State: open - Opened by nazleez over 2 years ago - 1 comment

#58 - Summary matrix of density plot

Issue - State: closed - Opened by parvathisudha over 2 years ago

#57 - x11 issues with jpeg

Issue - State: closed - Opened by rbutleriii almost 3 years ago - 2 comments

#56 - Takes extremely long to plot the figure

Issue - State: open - Opened by xiw588 almost 3 years ago - 3 comments

#55 - Chromosome selection for manhattan plot

Issue - State: closed - Opened by shameem356 almost 3 years ago - 7 comments

#54 - Error : missing value where TRUE/FALSE needed

Issue - State: open - Opened by anikng almost 3 years ago - 4 comments

#53 - Highlight one SNP but located in the wrong Chromosome

Issue - State: open - Opened by anglixue almost 3 years ago - 2 comments

#52 - Feature request: visualize genomic intervals in SNP-density plot function

Issue - State: open - Opened by orijitghosh almost 3 years ago - 1 comment

#51 - Highlighting SNPs

Issue - State: open - Opened by TinaNeik339 almost 3 years ago - 2 comments

#50 - how this package to calculate -log10(Pvalue)?

Issue - State: open - Opened by yuanlizhanshi about 3 years ago - 1 comment

#49 - Error in Pmap[, 1] : subscript out of bounds

Issue - State: open - Opened by Shicheng-Guo about 3 years ago - 1 comment

#48 - width and height - unit?

Issue - State: closed - Opened by sariya about 3 years ago - 4 comments

#47 - Miami plot highlight SNPs

Issue - State: open - Opened by rbutleriii about 3 years ago

#46 - Error in plot.window(...) : need finite 'xlim' values

Issue - State: open - Opened by Shicheng-Guo over 3 years ago - 4 comments

#45 - errors with github verse

Issue - State: open - Opened by pengYW over 3 years ago - 2 comments

#44 - The `main` parameter is not working

Issue - State: open - Opened by xie186 over 3 years ago - 11 comments

#43 - Multi-track gene labels in circular manhattan

Issue - State: open - Opened by yuj1r0 over 3 years ago - 1 comment

#42 - How to draw two lines in one graph

Issue - State: open - Opened by Yung-Chien over 3 years ago - 2 comments

#41 - Using different genome-wide threshold lines per trait

Issue - State: open - Opened by JavierMenRev over 3 years ago - 2 comments

#40 - multitrait annotation

Issue - State: open - Opened by rb643 over 3 years ago - 1 comment

#39 - multitrack slow

Issue - State: open - Opened by rb643 over 3 years ago - 1 comment

#38 - Sequence interval visualization

Issue - State: closed - Opened by kaanokay over 3 years ago - 2 comments

#37 - highlight SNPs of interest

Issue - State: closed - Opened by devenderarora almost 4 years ago - 6 comments

#36 - Incorrect behavior highlight.text.col

Issue - State: closed - Opened by YannLeGuen almost 4 years ago - 2 comments

#35 - Highlight.text overlapping data point

Issue - State: closed - Opened by YannLeGuen almost 4 years ago - 5 comments

#34 - How to adjust the colour when SNP density is 0

Issue - State: open - Opened by MluNamjae almost 4 years ago - 2 comments

#33 - Error in seq.default

Issue - State: open - Opened by UronicAcid about 4 years ago - 4 comments

#32 - Plotting single chromosome

Issue - State: closed - Opened by caultona about 4 years ago - 2 comments

#31 - How can I exponentially scale the Y axis

Issue - State: open - Opened by Conxz about 4 years ago - 4 comments

#30 - How to make background transparent?

Issue - State: closed - Opened by orijitghosh about 4 years ago - 5 comments

#29 - Circular Manhattan with only a subset of variants

Issue - State: open - Opened by swvanderlaan about 4 years ago - 8 comments

#28 - title isn't being added || angle with CHR label not working || osx || R 3.6

Issue - State: closed - Opened by sariya about 4 years ago - 2 comments