Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / YeoLab/flotilla issues and pull requests

#352 - Bump rack-protection from 1.5.1 to 1.5.5 in /doc/.deploy_heroku

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#351 - Bump rack from 1.5.2 to 1.6.13 in /doc/.deploy_heroku

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#350 - Bump rack from 1.5.2 to 1.6.12 in /doc/.deploy_heroku

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago - 1 comment
Labels: dependencies

#349 - Bump rack from 1.5.2 to 1.6.11 in /doc/.deploy_heroku

Pull Request - State: closed - Opened by dependabot[bot] about 5 years ago - 1 comment
Labels: dependencies

#348 - install of flotilla in window anaconda

Issue - State: open - Opened by rajitnair over 6 years ago

#347 - Bug when installing flotilla

Issue - State: open - Opened by htnani over 6 years ago

#346 - Widgets not working

Issue - State: open - Opened by fontclos over 7 years ago - 1 comment

#345 - Problems with combat

Issue - State: open - Opened by olgabot about 8 years ago

#344 - Integrate with 10x genomics output

Issue - State: open - Opened by olgabot about 8 years ago

#343 - Flexible plot feature

Pull Request - State: closed - Opened by olgabot about 8 years ago

#342 - add fault-tolerant differential expression test

Pull Request - State: closed - Opened by olgabot about 8 years ago

#341 - use Holovies for creating panels of interactive figures

Issue - State: open - Opened by olgabot about 8 years ago

#340 - Number of mapped reads gets modified upon study creation?

Issue - State: open - Opened by olgabot about 8 years ago

#339 - Make `plot_feature` more flexible

Issue - State: open - Opened by olgabot over 8 years ago

#338 - Get rid of `expression_thresh`

Issue - State: open - Opened by olgabot over 8 years ago

#337 - Get rid of `.data_original`

Issue - State: open - Opened by olgabot over 8 years ago

#336 - Yet another Python3 bug

Issue - State: open - Opened by olgabot over 8 years ago - 1 comment

#335 - Update README.md

Pull Request - State: open - Opened by BioGeek over 8 years ago - 1 comment

#334 - Yet another matrix data format

Issue - State: open - Opened by olgabot over 8 years ago

#333 - Wishbone single celll project

Issue - State: open - Opened by olgabot over 8 years ago

#332 - `plot_gene` to support arbitrary ordering (like psueodotime)

Issue - State: open - Opened by olgabot over 8 years ago
Labels: enhancement, someday

#331 - Python2andpython3

Pull Request - State: closed - Opened by alaindomissy over 8 years ago - 2 comments

#330 - To do list

Issue - State: open - Opened by alaindomissy over 8 years ago

#329 - use % formatter

Pull Request - State: closed - Opened by EdwardBetts over 8 years ago - 2 comments

#328 - Flotilla errors with study.plot_graph()

Issue - State: closed - Opened by LeenMachine almost 9 years ago - 1 comment

#327 - Flotilla fails with ValueError while executing "plot_pca" command

Issue - State: closed - Opened by shassathe almost 9 years ago - 8 comments

#326 - Replace `Study` objects with `xray` datasets

Issue - State: open - Opened by olgabot almost 9 years ago

#325 - Simplify code

Issue - State: open - Opened by olgabot almost 9 years ago

#324 - Reinstalled flotilla and get "load_hdf" import error

Issue - State: closed - Opened by shassathe about 9 years ago - 2 comments

#323 - Threshold of expression data uses unlogged threshold

Issue - State: open - Opened by olgabot about 9 years ago

#322 - Fix clustermap thresh

Pull Request - State: closed - Opened by olgabot about 9 years ago

#321 - Error Importing Flotilla

Issue - State: closed - Opened by shassathe about 9 years ago - 2 comments

#320 - Correct sandbox call: conda create --name flotilla_env

Issue - State: closed - Opened by DrMZZ over 9 years ago - 1 comment

#318 - Cannot setup flotilla on Windows?

Issue - State: open - Opened by CinchBlue over 9 years ago - 1 comment

#317 - Update violinplots to work with seaborn 0.6

Pull Request - State: open - Opened by olgabot over 9 years ago
Labels: in progress

#316 - Fix failing splicing compute tests and get rid of various code smells

Pull Request - State: open - Opened by olgabot over 9 years ago
Labels: in progress

#313 - Unable to download hg19 annotations

Issue - State: open - Opened by hjeanc over 9 years ago - 3 comments

#312 - change example for how to run coverage testing on a single file

Pull Request - State: closed - Opened by olgabot over 9 years ago

#311 - Use at least 20 samples for all splicing calculations

Pull Request - State: closed - Opened by olgabot over 9 years ago - 1 comment

#310 - Stepwise modalities

Pull Request - State: closed - Opened by olgabot over 9 years ago

#309 - Fix tidy_splicing_with_expression to deal with when splicing events m…

Pull Request - State: closed - Opened by olgabot over 9 years ago - 1 comment

#308 - By default, rasterize the lavalamp plot

Pull Request - State: closed - Opened by olgabot over 9 years ago - 1 comment

#307 - Can't embark on study name only

Issue - State: open - Opened by olgabot over 9 years ago
Labels: usability, show-stopping

#306 - Update combat code to work with multiple covariates in the batches

Pull Request - State: closed - Opened by olgabot over 9 years ago - 1 comment

#305 - Add auto-deployment to PyPI on tagged branches

Pull Request - State: closed - Opened by olgabot over 9 years ago

#303 - Py3k test fixes

Pull Request - State: closed - Opened by olgabot over 9 years ago

#302 - Fix various documentation issues

Pull Request - State: open - Opened by olgabot over 9 years ago
Labels: in progress

#301 - Get the ipython notebooks actually building for the documentation

Pull Request - State: closed - Opened by olgabot over 9 years ago

#300 - NMF space plot axis labels are wrong

Issue - State: open - Opened by olgabot over 9 years ago

#299 - Add python3 compatibility

Pull Request - State: closed - Opened by jessicalettes over 9 years ago - 3 comments

#298 - PCA heatmap doesn't scale to few features

Issue - State: open - Opened by olgabot over 9 years ago

#297 - Metadata marker

Pull Request - State: open - Opened by olgabot over 9 years ago - 2 comments
Labels: in progress

#296 - Doc ipynb fixes

Pull Request - State: closed - Opened by olgabot over 9 years ago - 1 comment

#295 - Metadata ignore subset columns

Pull Request - State: open - Opened by olgabot over 9 years ago - 2 comments
Labels: in progress

#294 - Abstract out biology-specific parts

Issue - State: open - Opened by olgabot over 9 years ago
Labels: discussion

#293 - Add correlation type to `interactive_correlations`

Issue - State: open - Opened by olgabot over 9 years ago - 1 comment
Labels: beginner-friendly

#292 - Add color legend to clustermap

Issue - State: open - Opened by olgabot over 9 years ago
Labels: enhancement

#291 - Interactive: Use `Text` and `Button` widgets instead of deprecated ones

Issue - State: open - Opened by olgabot over 9 years ago - 1 comment
Labels: beginner-friendly

#290 - make sure boolean columns are used as sample/feature subsets

Pull Request - State: closed - Opened by olgabot over 9 years ago - 3 comments

#289 - Boolean feature subsets don't work

Issue - State: closed - Opened by olgabot over 9 years ago - 1 comment

#288 - Add classifier subsets to `metadata` columns

Issue - State: open - Opened by olgabot over 9 years ago - 2 comments
Labels: enhancement

#287 - For ordered sample subsets, be able to take any flexible range

Issue - State: open - Opened by olgabot over 9 years ago - 1 comment

#286 - In interactive_*, add option to mix sample and feature subsets

Issue - State: open - Opened by olgabot over 9 years ago
Labels: enhancement

#285 - Plotting changes

Pull Request - State: closed - Opened by olgabot over 9 years ago - 5 comments

#284 - Auto-create tab-complete-able sample subsets from metadata

Issue - State: open - Opened by olgabot over 9 years ago - 1 comment
Labels: enhancement

#283 - Add "show_vectors" and all other pca options to study.plot_pca

Issue - State: open - Opened by olgabot over 9 years ago
Labels: beginner-friendly

#282 - Update species data location

Pull Request - State: open - Opened by olgabot over 9 years ago
Labels: in progress

#281 - Remove NAs from sample subsets

Issue - State: open - Opened by olgabot over 9 years ago
Labels: enhancement

#280 - Set default number of components in DataFrameReducerBase

Issue - State: open - Opened by olgabot over 9 years ago
Labels: beginner-friendly

#279 - Establish common interactive features

Issue - State: open - Opened by olgabot over 9 years ago
Labels: api

#278 - Add supplementaldata to tutorial

Pull Request - State: closed - Opened by olgabot over 9 years ago

#277 - Study save min samples

Pull Request - State: closed - Opened by olgabot over 9 years ago - 4 comments

#275 - Modality priors

Pull Request - State: closed - Opened by olgabot over 9 years ago - 4 comments

#274 - Add option to scramble a study for saving and sharing unpublished results

Pull Request - State: open - Opened by olgabot over 9 years ago
Labels: in progress

#273 - Decomposition heatmap pcs

Pull Request - State: closed - Opened by olgabot over 9 years ago - 3 comments

#272 - Supplemental data

Pull Request - State: closed - Opened by olgabot over 9 years ago - 2 comments

#270 - Plot contributions of features to components as a heatmap

Issue - State: open - Opened by olgabot over 9 years ago
Labels: enhancement

#269 - upgrade `BaseData`, `ClassifierBase`, etc to Python's `abc` AbstractBaseClass

Issue - State: open - Opened by olgabot over 9 years ago
Labels: api

#268 - Auto-release to PyPI via Travis CI

Issue - State: open - Opened by olgabot over 9 years ago - 2 comments
Labels: enhancement, beginner-friendly

#266 - Gene ontology

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 7 comments

#258 - Various interactive function fixes

Pull Request - State: open - Opened by olgabot almost 10 years ago - 9 comments
Labels: in progress

#254 - Fix docs

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 1 comment

#253 - Combat batch effects

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 1 comment

#251 - waffle.io Badge

Pull Request - State: closed - Opened by waffle-iron almost 10 years ago

#250 - Option to scale or not scale PCA x and y axes by variance in PCA

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 3 comments

#247 - Linting and pep8 fixes

Pull Request - State: closed - Opened by olgabot almost 10 years ago

#237 - README fixes

Pull Request - State: closed - Opened by olgabot almost 10 years ago

#234 - Bayesian modalities

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 1 comment

#233 - add PR checklist proposal

Pull Request - State: closed - Opened by olgabot almost 10 years ago

#231 - Make independent test datasets

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 1 comment

#229 - Violinplot no outliers

Pull Request - State: closed - Opened by olgabot almost 10 years ago

#227 - Bokeh pca

Pull Request - State: closed - Opened by olgabot almost 10 years ago

#226 - Fix modality calculations

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 2 comments

#223 - Expression vs splicing consistency

Pull Request - State: closed - Opened by olgabot almost 10 years ago - 1 comment

#23 - python 3 compatibility

Issue - State: open - Opened by olgabot over 10 years ago - 5 comments
Labels: beginner-friendly