Ecosyste.ms: Issues

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GitHub / Xinglab/rmats2sashimiplot issues and pull requests

#44 - Multiple threads

Issue - State: closed - Opened by czfoo over 4 years ago - 1 comment

#43 - plot with one sample

Issue - State: closed - Opened by zpliu1126 over 4 years ago - 2 comments

#42 - Require only s1 or b1

Pull Request - State: closed - Opened by EricKutschera over 4 years ago - 1 comment

#41 - Update the README

Pull Request - State: closed - Opened by EricKutschera over 4 years ago

#40 - RPKM values are in double digits or less. What am I doing wrong?

Issue - State: closed - Opened by mranjan1 over 4 years ago - 4 comments

#39 - Allow running with Python 3

Pull Request - State: closed - Opened by EricKutschera over 4 years ago

#38 - Update warning and error messages

Pull Request - State: closed - Opened by EricKutschera over 4 years ago

#37 - Handle mRNA and transcript the same in annotation files

Pull Request - State: closed - Opened by EricKutschera over 4 years ago

#36 - Handle BAMs without chr prefix when using rmats events file

Pull Request - State: closed - Opened by EricKutschera over 4 years ago

#34 - test data not available

Issue - State: closed - Opened by Lix1993 over 4 years ago - 1 comment

#33 - Read counts inconsistency between rMATs results and rmats2sashimiplot

Issue - State: closed - Opened by thereallda over 4 years ago - 2 comments

#32 - Error: Must provide a coverage value for each sample or leave coverages unset.

Issue - State: closed - Opened by archana433 almost 5 years ago - 1 comment

#31 - setup.py fails with an error

Issue - State: closed - Opened by mranjan1 almost 5 years ago - 1 comment

#30 - pysam import issue, no pdf output

Issue - State: closed - Opened by AmrR101 almost 5 years ago - 5 comments

#29 - no pdf in the output

Issue - State: closed - Opened by skytguuu about 5 years ago - 2 comments

#28 - important imformation

Issue - State: closed - Opened by millersan almost 6 years ago - 6 comments

#27 - not generate event gff (related error: no entries found)

Issue - State: closed - Opened by shihaoshen about 6 years ago - 3 comments

#26 - link to testData broken

Issue - State: closed - Opened by leipzig about 6 years ago - 1 comment

#25 - not recognizing bam files

Issue - State: closed - Opened by seyfim almost 7 years ago - 2 comments

#24 - Error: no entries found

Issue - State: closed - Opened by albertoriva about 7 years ago - 8 comments

#23 - P value instead of inclusion level in the plot

Issue - State: closed - Opened by sridhar0605 about 7 years ago - 2 comments

#22 - WTF : SyntaxError: Missing parentheses in call to 'print'

Issue - State: closed - Opened by ZheFrench about 7 years ago - 7 comments

#21 - unknown error

Issue - State: closed - Opened by frankbioinfo about 7 years ago - 27 comments

#20 - install error

Issue - State: closed - Opened by zhenzhenyang-psu about 7 years ago - 1 comment

#19 - working with Ensembl annotation?

Issue - State: closed - Opened by silvanopiazza over 7 years ago - 5 comments

#18 - Update setup and change the default value of min-counts

Pull Request - State: closed - Opened by dm-druid over 7 years ago

#17 - Fix(rmats2sashimiplot): fix the bug with event A3SS and A5SS

Pull Request - State: closed - Opened by dm-druid over 7 years ago

#16 - Bug fix: custom color setting for grouping case

Pull Request - State: closed - Opened by dm-druid over 7 years ago - 1 comment

#15 - Colouring of groups does not work

Issue - State: closed - Opened by cmonger over 7 years ago - 2 comments

#14 - What the mean of lncLevel at the right side of sashimiplot?

Issue - State: closed - Opened by xflicsu over 7 years ago - 1 comment

#13 - tagging releases?

Issue - State: closed - Opened by wresch almost 8 years ago

#12 - UnboundLocalError

Issue - State: closed - Opened by lmanchon almost 8 years ago - 1 comment

#11 - rmats2sashimiplot IndexError

Issue - State: closed - Opened by bluesea2017 almost 8 years ago - 4 comments

#10 - Displaying PSI value for coordinate plot

Issue - State: open - Opened by seharvey2012 almost 8 years ago - 3 comments
Labels: enhancement

#8 - Program exits in certain cases

Issue - State: closed - Opened by bahramis almost 8 years ago - 1 comment
Labels: bug

#7 - Error with running on MXE event types

Issue - State: closed - Opened by bahramis almost 8 years ago - 3 comments
Labels: bug

#6 - Handle zero level inclusion levels

Pull Request - State: closed - Opened by agardb about 8 years ago - 1 comment

#5 - problem in rmats2sashimiplot install

Issue - State: closed - Opened by noahpieta over 8 years ago - 3 comments
Labels: enhancement

#4 - sh: index_gff: command not found sh: sashimi_plot: command not found

Issue - State: closed - Opened by gdoura almost 9 years ago

#3 - Index files of bam files...

Issue - State: closed - Opened by klugem almost 9 years ago - 1 comment
Labels: enhancement

#2 - Multiple modification FOR <src/rmats2sashimiplot/rmats2sashimiplot.py>

Pull Request - State: closed - Opened by Tong-Chen about 9 years ago

#1 - Usage/Help message is not provdied

Issue - State: closed - Opened by bahramis over 9 years ago - 3 comments