Ecosyste.ms: Issues

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GitHub / XiaoTaoWang/EagleC issues and pull requests

#39 - Help Interpreting Results for Structural Variations

Issue - State: open - Opened by qolba 5 months ago - 1 comment

#38 - Submitting jobs using bash array

Issue - State: open - Opened by re2srm 7 months ago

#37 - how to generate file for '--cnv-file' in plot-intraSVs fuction?

Issue - State: open - Opened by 7insong 8 months ago - 1 comment

#36 - On the problem of standard sets

Issue - State: open - Opened by TomWang666 11 months ago

#34 - Hi-C 3.0 with DdeI+DpnII

Issue - State: open - Opened by gibcus 12 months ago - 5 comments

#33 - Failed to run "download-pretrained-models"

Issue - State: closed - Opened by bismarck1008 about 1 year ago - 1 comment

#31 - No module named 'eaglec.scoreUtils'

Issue - State: open - Opened by jiadong324 over 1 year ago - 7 comments

#29 - Inquiry for KeyError:'sweight'

Issue - State: open - Opened by Sanghyun-WaxingMoon over 1 year ago - 2 comments

#27 - Application to dm6

Issue - State: open - Opened by MarcoDiS over 1 year ago - 1 comment

#26 - Optimization loop failed

Issue - State: open - Opened by DittmanC over 1 year ago - 1 comment

#25 - specify gpu number to use

Issue - State: open - Opened by Xieeeee over 1 year ago - 1 comment

#23 - Non human genomes

Issue - State: closed - Opened by luciaalvarez95 over 1 year ago - 4 comments

#22 - EagleC detecting too few SVs

Issue - State: closed - Opened by nyuhic almost 2 years ago - 2 comments

#21 - EagleC HiChIP with Neoloopfinder

Issue - State: closed - Opened by nyuhic almost 2 years ago - 4 comments

#20 - Capture HiC data

Issue - State: open - Opened by yfarjoun almost 2 years ago - 3 comments

#19 - error - eaglec.scoreUtils Not found

Issue - State: open - Opened by abhijitcbio almost 2 years ago - 9 comments

#18 - unable to run the example on linux server (redhat)

Issue - State: open - Opened by clolalan7 almost 2 years ago - 2 comments

#17 - How much resources are needed

Issue - State: closed - Opened by nyuhic almost 2 years ago - 2 comments

#16 - Changing the --cnv-max-value parameter for plot-intraSVs does not work

Issue - State: closed - Opened by kuba11 almost 2 years ago - 2 comments

#15 - predictSV-ERROR: sequence item 2: expected str instance, NoneType found

Issue - State: closed - Opened by X201231 about 2 years ago - 2 comments

#14 - How to identify the SV between two genomes from two species

Issue - State: open - Opened by aaannaw about 2 years ago - 1 comment

#13 - inquiries on output files

Issue - State: open - Opened by distilledchild over 2 years ago - 2 comments

#12 - OSError file signature not found

Issue - State: open - Opened by ValentinaBoP over 2 years ago - 2 comments

#11 - predictSV have some error

Issue - State: closed - Opened by yangfeizZZ over 2 years ago - 2 comments

#10 - _expected.pkl is not found

Issue - State: closed - Opened by Bo-UT over 2 years ago - 4 comments

#9 - No module named 'eaglec.scoreUtils'

Issue - State: open - Opened by FarmOmics over 2 years ago - 3 comments

#8 - Failed to download pre-trained models

Issue - State: closed - Opened by shenlinyong over 2 years ago - 7 comments

#7 - output of EagleC as input of Neoloopfinder

Issue - State: open - Opened by Bo-UT over 2 years ago - 2 comments
Labels: documentation

#6 - Same results with ICE and CNV normalized data

Issue - State: open - Opened by Bo-UT over 2 years ago - 2 comments

#5 - an error with 'weight'

Issue - State: open - Opened by distilledchild over 2 years ago - 4 comments

#4 - Select SV type before running

Issue - State: open - Opened by baozg over 2 years ago - 1 comment

#3 - Key Error: 'sweight' in the predictSV

Issue - State: closed - Opened by baozg over 2 years ago - 3 comments

#2 - Download manually for HPC

Issue - State: closed - Opened by baozg over 2 years ago - 4 comments

#1 - OSError: Unable to open file and subprocess.CalledProcessError:

Issue - State: open - Opened by Bo-UT over 2 years ago - 13 comments
Labels: documentation, good first issue