WrightonLabCSU/DRAM issues and pull requests

#131 - kofam non-zero exit status

Issue - State: closed - Opened by theo-llewellyn almost 3 years ago - 3 comments

#129 - Custom database

Issue - State: closed - Opened by slambrechts almost 3 years ago - 7 comments

#126 - Enhance database handler

Pull Request - State: closed - Opened by shafferm about 3 years ago - 2 comments

#125 - Cannot start multiple threads

Issue - State: closed - Opened by AnyiHu about 3 years ago - 4 comments

#118 - DataFrame is highly fragmented warning

Issue - State: closed - Opened by smdabdoub about 3 years ago - 2 comments

#108 - KeyError: 'K16716' when using DRAM-v.py annotate

Issue - State: closed - Opened by shujieH over 3 years ago - 4 comments

#102 - subprocess.CalledProcessError: mmseqs

Issue - State: closed - Opened by cflores10 over 3 years ago - 7 comments

#101 - subprocess.CalledProcessError

Issue - State: closed - Opened by ghost over 3 years ago - 6 comments

#95 - Is it possible to resume the database preparation step?

Issue - State: closed - Opened by rzhan186 over 3 years ago - 6 comments

#94 - DRAM_setup not preparing all databases

Issue - State: closed - Opened by etod5987 over 3 years ago - 13 comments

#92 - `DRAM` running time

Issue - State: open - Opened by ZeroDesigner over 3 years ago - 4 comments
Labels: enhancement

#90 - FileExistsError: [Errno 17] File exists: './dramv-annotate' when specifying output dir

Issue - State: open - Opened by flannsmith over 3 years ago - 8 comments
Labels: enhancement

#86 - KeyError: 'YP_009822279.1' when using DRAM-v.py

Issue - State: closed - Opened by ChenTianYi99 over 3 years ago - 16 comments

#85 - only CAZy annotation information in distilled files

Issue - State: closed - Opened by gruningerrj over 3 years ago - 6 comments

#84 - No distillate information found warning

Issue - State: open - Opened by ucassee over 3 years ago - 3 comments
Labels: enhancement

#81 - Set up databases in one directory in server and want to use them in another directory/new session

Issue - State: closed - Opened by nuriaher over 3 years ago - 2 comments

#80 - database does not exist at path none

Issue - State: closed - Opened by yulong0827 over 3 years ago - 6 comments

#77 - Using DRAM to distill annotations from alternative annotation pipelines

Issue - State: closed - Opened by cjburgess over 3 years ago - 4 comments

#75 - AttributeError: 'NoneType' object has no attribute 'split'

Issue - State: closed - Opened by ayixon over 3 years ago - 3 comments

#74 - How to understand the butyrate pathways

Issue - State: open - Opened by SilasK over 3 years ago - 5 comments
Labels: enhancement, help wanted, good first issue

#68 - How to add classification for each genome in the html heatmap

Issue - State: closed - Opened by jianshu93 over 3 years ago - 4 comments

#66 - hmmsearch not parallelized

Issue - State: open - Opened by jianshu93 over 3 years ago - 3 comments
Labels: enhancement

#65 - DRAM on viral contigs instead of DRAM-v

Issue - State: closed - Opened by miasungeunlee over 3 years ago - 2 comments

#64 - Peptidase database

Issue - State: closed - Opened by VictorBorin almost 4 years ago - 4 comments

#54 - Is there a way to "restart" DRAM after it stops after an error ?

Issue - State: closed - Opened by francis29029 almost 4 years ago - 10 comments
Labels: enhancement

#47 - More modules

Issue - State: open - Opened by SilasK almost 4 years ago - 9 comments
Labels: enhancement, potential

Ecosyste.ms: Issues

GitHub / WrightonLabCSU/DRAM issues and pull requests