WiscEvan/Automappa issues and pull requests

#48 - Add functionality to download figures

Issue - State: closed - Opened by evanroyrees 11 months ago
Labels: enhancement

#47 - :art:📸 Add download plot buttons

Pull Request - State: closed - Opened by evanroyrees 11 months ago

#46 - :arrow_up: Pin pydantic to >1.8.2,<2

Pull Request - State: closed - Opened by evanroyrees about 1 year ago

#45 - Update environment.yml

Pull Request - State: closed - Opened by kaw97 about 1 year ago

#44 - Update CONTRIBUTING.md

Pull Request - State: closed - Opened by evanroyrees about 1 year ago

#43 - Release 2.2.1

Pull Request - State: closed - Opened by evanroyrees about 1 year ago

#42 - :art: Add description for typical Autometa main binning output file

Pull Request - State: closed - Opened by evanroyrees about 1 year ago
Labels: documentation, aesthetic

#41 - :art: Format embedding axes options with subscripts

Pull Request - State: closed - Opened by evanroyrees about 1 year ago
Labels: enhancement, aesthetic

#40 - Release 2.2

Pull Request - State: closed - Opened by evanroyrees about 1 year ago
Labels: documentation, enhancement, dependencies, aesthetic, performance

#39 - Refactor with fixes, features and improved directory structure

Pull Request - State: closed - Opened by evanroyrees about 1 year ago
Labels: bug, documentation, enhancement, dependencies, aesthetic, performance

#38 - The upload modal should tell you what the default filename should look like

Issue - State: closed - Opened by jason-c-kwan about 1 year ago
Labels: documentation, aesthetic

#37 - `Transferlist` for control of which clusters to keep/discard per sample

Issue - State: open - Opened by evanroyrees about 1 year ago
Labels: enhancement, question

#36 - problem installing

Issue - State: closed - Opened by imonteroo almost 2 years ago - 6 comments

#35 - :whale::tv::art: Automappa web app with server upload and background pre-/post-processing services

Pull Request - State: closed - Opened by evanroyrees over 2 years ago
Labels: enhancement, aesthetic, performance

#34 - Automappa web app with server upload and background pre-/post-processing services

Pull Request - State: closed - Opened by evanroyrees over 2 years ago
Labels: enhancement, performance

#33 - Add notification to page when browser storage limits are reached

Issue - State: closed - Opened by evanroyrees over 2 years ago
Labels: enhancement, aesthetic

#32 - :art::bug::fire: Fix bugs, add store features, logging and favicon

Pull Request - State: closed - Opened by evanroyrees over 2 years ago
Labels: bug, enhancement, aesthetic

#31 - Develop

Pull Request - State: closed - Opened by evanroyrees over 2 years ago

#30 - 🐳 🍎 Docker image is not compatiblele with ARM processor

Issue - State: closed - Opened by Sidduppal over 2 years ago
Labels: bug, enhancement

#29 - An approach to editing/removing/adding "vestigial" contigs from refined bins

Issue - State: closed - Opened by evanroyrees over 2 years ago - 2 comments
Labels: enhancement, help wanted, question

#28 - Develop

Pull Request - State: closed - Opened by evanroyrees almost 3 years ago

#27 - 🏠 Add home tab

Issue - State: closed - Opened by evanroyrees almost 3 years ago
Labels: enhancement

#26 - Add metagenome and markers upload modal (or buttons or card, etc.)

Issue - State: closed - Opened by evanroyrees almost 3 years ago
Labels: enhancement, question, aesthetic

#25 - Refinements table not displaying

Issue - State: closed - Opened by evanroyrees almost 3 years ago - 1 comment
Labels: bug

#24 - Prevent scatterplots axes boundaries from changing on select/hide

Issue - State: closed - Opened by evanroyrees almost 3 years ago - 1 comment
Labels: aesthetic, performance

#23 - Refactor Scatterplot callbacks

Issue - State: closed - Opened by evanroyrees almost 3 years ago - 1 comment
Labels: performance

#22 - Cache expensive callbacks

Issue - State: closed - Opened by evanroyrees almost 3 years ago - 1 comment
Labels: performance, stretch

#21 - Replace default page tab icon

Issue - State: closed - Opened by evanroyrees almost 3 years ago - 5 comments
Labels: help wanted, good first issue, question, aesthetic

#19 - Consider using same marker sets that CheckM uses to assess purity/completeness

Issue - State: open - Opened by samche42 almost 3 years ago - 1 comment
Labels: enhancement

#18 - Provide summary stats of bins following extraction to fasta files

Issue - State: open - Opened by samche42 almost 3 years ago
Labels: enhancement

#17 - After contig selection is saved, automatically hide saved contigs from view.

Issue - State: closed - Opened by samche42 almost 3 years ago - 2 comments
Labels: enhancement

#16 - Develop

Pull Request - State: closed - Opened by chanana almost 3 years ago

#15 - Visualize assembly graph of selected contigs

Issue - State: open - Opened by evanroyrees almost 3 years ago - 2 comments
Labels: enhancement

#14 - Rename dashboard tabs

Issue - State: closed - Opened by evanroyrees almost 3 years ago
Labels: good first issue

#13 - Send in PR for Automappa bioconda recipe

Issue - State: closed - Opened by evanroyrees almost 3 years ago - 1 comment
Labels: enhancement

#12 - Change index.py input arguments

Issue - State: closed - Opened by evanroyrees almost 3 years ago
Labels: enhancement

#11 - Fix GH Actions docker CI/CD

Issue - State: closed - Opened by evanroyrees almost 3 years ago - 2 comments
Labels: bug

#10 - Additional Filtering tool

Issue - State: open - Opened by evanroyrees over 3 years ago - 1 comment
Labels: enhancement

#9 - Persistent refinements

Issue - State: closed - Opened by evanroyrees over 3 years ago - 2 comments
Labels: bug

#8 - Indicate contigs with marker genes

Issue - State: closed - Opened by evanroyrees over 3 years ago - 2 comments
Labels: enhancement

#7 - Change `select MAG refinements` toggle to `Save selection to refinement MAG` button

Issue - State: closed - Opened by evanroyrees over 3 years ago - 1 comment
Labels: enhancement

#6 - Fix docker CI/CD

Pull Request - State: closed - Opened by evanroyrees almost 4 years ago

#5 - :art: Add docker support

Pull Request - State: closed - Opened by evanroyrees almost 4 years ago

#4 - Merge Main

Pull Request - State: closed - Opened by evanroyrees almost 4 years ago

#3 - Bump urllib3 from 1.23 to 1.24.2

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#2 - Bump werkzeug from 0.14.1 to 0.15.3

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#1 - Bump jinja2 from 2.10 to 2.10.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

GitHub / WiscEvan/Automappa issues and pull requests