Weeks-UNC/shapemapper2 issues and pull requests

#46 - Fastq format bugfix

Pull Request - State: open - Opened by Psirving about 1 year ago

#45 - Access to 2.2 update

Issue - State: open - Opened by catherine-douds over 1 year ago - 1 comment

#44 - V22 release

Pull Request - State: closed - Opened by anthonymustoe over 1 year ago - 1 comment

#43 - Reactivity profile calculation for two samples (Modified & Untreated)

Issue - State: closed - Opened by Valentine022 over 1 year ago - 1 comment

#42 - QC reliability

Issue - State: open - Opened by AbeerMM over 1 year ago - 5 comments

#41 - masking the primers in shape reactivity profile

Issue - State: open - Opened by gunjangunjan22 over 1 year ago - 4 comments

#40 - Shapemapper2 installation issue on oracle linux

Issue - State: open - Opened by GunjanVasudeva22 over 1 year ago - 1 comment

#39 - Low alignment percentage

Issue - State: open - Opened by herber4 over 1 year ago - 1 comment

#38 - Raw fastq files processing

Issue - State: closed - Opened by angelika888 almost 2 years ago - 9 comments

#37 - problem with sequence corrector

Issue - State: open - Opened by irinatu almost 2 years ago - 2 comments

#36 - workflow runs very slow

Issue - State: open - Opened by AbeerMM almost 2 years ago - 5 comments

#35 - 'RuntimeError: Error: input data lengths do not all match.' in the CalcProfile step

Issue - State: open - Opened by eumhh about 2 years ago - 5 comments

#34 - Profile figure is not created for long sequence with no error.

Issue - State: open - Opened by Psirving about 2 years ago

#33 - mutation_counter formatting

Issue - State: closed - Opened by catherine-douds about 2 years ago - 1 comment

#32 - mate pairs not detected as paired.

Issue - State: closed - Opened by yoonsquared about 2 years ago - 7 comments

#31 - not understandable Error message about primers

Issue - State: closed - Opened by irinatu over 2 years ago - 4 comments

#30 - Mapped reads from amplicon wokflow - Error

Issue - State: closed - Opened by angelika888 over 2 years ago - 20 comments

#29 - ShapeMapper run failed while MutationCounter_modified

Issue - State: closed - Opened by amkilar over 2 years ago - 4 comments

#28 - Sequence corrector error

Issue - State: closed - Opened by jodyphelan over 2 years ago - 2 comments

#27 - ShapeMapper using PACBIO

Issue - State: closed - Opened by dksenthil over 2 years ago - 1 comment

#26 - Component "Tab6Interleaver" (sample:Modified) failed

Issue - State: open - Opened by SooLee almost 3 years ago - 1 comment

#25 - FileNotFoundError: [Errno 2] No such file or directory

Issue - State: closed - Opened by rotruebchen almost 3 years ago - 1 comment

#23 - Mutation_parser

Issue - State: closed - Opened by yx04 about 3 years ago - 3 comments

#22 - Nextera prep + random primer

Issue - State: open - Opened by samcho over 3 years ago - 7 comments

#21 - an advice please

Issue - State: closed - Opened by tanasa almost 4 years ago - 4 comments

#20 - OS/pipeline troubles

Issue - State: open - Opened by benoahb almost 4 years ago - 2 comments

#19 - Should the target sequence always be transcriptome sequence?

Issue - State: closed - Opened by uaauaguga about 4 years ago - 2 comments

#18 - bbmap 38.x version :: error

Issue - State: open - Opened by EricDeveaud about 4 years ago

#17 - DeprecationWarning: 'U' mode is deprecated

Issue - State: open - Opened by EricDeveaud about 4 years ago

#16 - superfold software

Issue - State: closed - Opened by eoziolor over 4 years ago - 2 comments

#15 - ShapeMapper2 stops calculations

Issue - State: closed - Opened by angelika888 over 4 years ago - 4 comments

#14 - Error: must provide at least one target sequence

Issue - State: open - Opened by s-t-calus over 4 years ago - 15 comments

#13 - Read issue with SRA data from GEO Accession GSM3994935

Issue - State: closed - Opened by afafbioinfo over 4 years ago - 4 comments

#12 - BrokenPipeError

Issue - State: open - Opened by wcantara over 4 years ago - 4 comments

#11 - memory error

Issue - State: open - Opened by xfliu1995 almost 5 years ago - 4 comments

#10 - SRA download - fastq format isse

Issue - State: open - Opened by SawyerHicks almost 5 years ago

#9 - expose aligner effort options

Issue - State: closed - Opened by shapemapper about 5 years ago - 1 comment

#8 - --separate-ambig-counts passed to wrong executable

Issue - State: closed - Opened by shapemapper about 5 years ago - 1 comment

#7 - SuperFold

Issue - State: closed - Opened by xfliu1995 about 5 years ago - 3 comments

#6 - Unhelpful error message when R1 fastq missing

Issue - State: closed - Opened by shapemapper over 5 years ago - 1 comment

#5 - add link to shapemapper-txome

Issue - State: closed - Opened by shapemapper over 5 years ago - 1 comment

#4 - `--min-mutation-separation 0` behavior does not match expectations

Issue - State: closed - Opened by shapemapper almost 6 years ago - 1 comment

#3 - missing --output-aligned-reads option

Issue - State: closed - Opened by shapemapper almost 6 years ago - 1 comment

#2 - Median Rate Bug

Issue - State: closed - Opened by twchrist almost 6 years ago - 1 comment
Labels: bug

#1 - c++ unit test paths

Issue - State: closed - Opened by shapemapper almost 6 years ago - 1 comment
Labels: bug

GitHub / Weeks-UNC/shapemapper2 issues and pull requests