VisualNeuroscience-UH/CxSystem2 issues and pull requests

#95 - Bump cryptography from 43.0.0 to 43.0.1

Pull Request - State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies, python

#94 - Merging from master to dev

Pull Request - State: closed - Opened by sivanni almost 2 years ago

#93 - Deneve

Pull Request - State: closed - Opened by sivanni over 3 years ago

#92 - Print out the installation path when calling cxsystem2 -h

Issue - State: open - Opened by sivanni over 3 years ago
Labels: enhancement

#91 - Hpc puhti update

Pull Request - State: closed - Opened by sivanni almost 4 years ago

#90 - Hotfix

Pull Request - State: closed - Opened by sivanni over 4 years ago

#89 - Hotfix

Pull Request - State: closed - Opened by sivanni over 4 years ago

#88 - Neuron type not recognized in physiology config

Issue - State: closed - Opened by sivanni over 4 years ago - 19 comments

#87 - HPC assertion error

Issue - State: closed - Opened by sivanni over 4 years ago

#86 - When you run array run, no new connections are generated even when it says so

Issue - State: closed - Opened by sivanni almost 5 years ago - 1 comment

#85 - Macv1, cxsystem.py module, fixed expanded mode

Pull Request - State: closed - Opened by sivanni almost 5 years ago

#84 - Provide an error for defining the same neuron group twice

Issue - State: open - Opened by sivanni almost 5 years ago - 3 comments
Labels: more info needed

#83 - visualization rasterplot sampling dense

Issue - State: closed - Opened by sivanni almost 5 years ago - 1 comment
Labels: invalid

#82 - array_run.py exception not working

Issue - State: closed - Opened by sivanni almost 5 years ago - 3 comments
Labels: bug

#81 - Exporting parameters does not change ticks

Issue - State: closed - Opened by sivanni almost 5 years ago
Labels: bug

#80 - Run locally in cluster

Issue - State: open - Opened by sivanni almost 5 years ago
Labels: enhancement

#79 - cxvisualize: option to launch StackViz

Issue - State: open - Opened by henhok almost 5 years ago - 1 comment
Labels: enhancement

#78 - Array run filenames have multiple timestamps

Issue - State: closed - Opened by henhok almost 5 years ago

#77 - Array run gives error

Issue - State: closed - Opened by sivanni almost 5 years ago - 2 comments

#76 - Simulate button unresponsive

Issue - State: closed - Opened by henhok almost 5 years ago - 1 comment

#75 - Error after loading json

Issue - State: closed - Opened by sivanni almost 5 years ago
Labels: more info needed

#74 - Monitor needs empty space

Issue - State: closed - Opened by sivanni almost 5 years ago

#73 - COBAEIF giver error

Issue - State: closed - Opened by sivanni almost 5 years ago - 3 comments
Labels: more info needed

#72 - Cannot make rasterplot

Issue - State: closed - Opened by sivanni almost 5 years ago

#71 - cxvisualize does not find csv

Issue - State: closed - Opened by sivanni almost 5 years ago - 2 comments

#70 - cxserver not launhing simulations

Issue - State: closed - Opened by sivanni almost 5 years ago
Labels: bug

#69 - cxserver not launching

Issue - State: closed - Opened by sivanni almost 5 years ago
Labels: bug

#68 - Doc issues

Issue - State: closed - Opened by sivanni almost 5 years ago - 1 comment
Labels: enhancement

#67 - 191125 userdoc

Pull Request - State: closed - Opened by henhok almost 5 years ago - 2 comments

#66 - Download collection of files from backend

Issue - State: closed - Opened by Vafa-Andalibi almost 5 years ago - 1 comment
Labels: enhancement

#65 - Rasterplot-pdf does not work with simulations having numerous neuron groups?

Issue - State: closed - Opened by henhok almost 5 years ago
Labels: bug

#64 - Simulations fail to run when there's nothing to arrayrun?

Issue - State: closed - Opened by henhok almost 5 years ago - 2 comments
Labels: more info needed

#63 - IndexError when loading any example

Issue - State: closed - Opened by henhok almost 5 years ago
Labels: bug

#62 - Create BUI logger when running in https

Issue - State: closed - Opened by Vafa-Andalibi almost 5 years ago
Labels: enhancement

#61 - Results file should include the sim_title

Issue - State: closed - Opened by henhok almost 5 years ago

#60 - Command line command for config_file_converter

Issue - State: closed - Opened by henhok almost 5 years ago

#59 - Simulations create a lot of folders

Issue - State: closed - Opened by henhok almost 5 years ago

#58 - pytest example bug with `do_init_vm` set to 0

Issue - State: closed - Opened by Vafa-Andalibi about 5 years ago
Labels: bug

#57 - Initial neurodynlib integration

Pull Request - State: closed - Opened by henhok about 5 years ago

#56 - Run in cluster fails

Issue - State: closed - Opened by sivanni about 5 years ago - 1 comment

#55 - Saving setup cumbersome

Issue - State: closed - Opened by sivanni about 5 years ago - 2 comments
Labels: more info needed

#54 - Django fails when launched from command line

Issue - State: closed - Opened by sivanni about 5 years ago - 1 comment

#53 - CxSystem Workspace directory

Issue - State: closed - Opened by Vafa-Andalibi about 5 years ago - 2 comments
Labels: enhancement

#52 - new first page for CxSystem2

Issue - State: closed - Opened by Vafa-Andalibi about 5 years ago - 1 comment
Labels: enhancement

#51 - pip install issues

Issue - State: closed - Opened by sivanni about 5 years ago - 1 comment
Labels: bug

#50 - Grid_radius is not grid radius?

Issue - State: closed - Opened by henhok about 5 years ago - 4 comments
Labels: bug, help wanted, more info needed

#49 - Pull Luca's https django code to master

Pull Request - State: closed - Opened by henhok about 5 years ago - 1 comment

#48 - Command line app for fetching results from HPCs

Issue - State: closed - Opened by henhok about 5 years ago - 1 comment
Labels: enhancement

#47 - Allow reading stdout of ongoing simulations via the GUI

Issue - State: closed - Opened by henhok about 5 years ago - 1 comment
Labels: enhancement

#46 - Extracting raw brian code

Issue - State: open - Opened by henhok about 5 years ago
Labels: proposal, major feature

#45 - Button for deleting currently active tab

Issue - State: closed - Opened by henhok about 5 years ago - 1 comment
Labels: enhancement

#44 - Highlight currently active tab in Inputs, NeuronGroups, Connections &Physiology

Issue - State: closed - Opened by henhok about 5 years ago
Labels: enhancement

#43 - After updating from develop, gui_test.py does not run

Issue - State: closed - Opened by sivanni about 5 years ago - 1 comment
Labels: bug

#42 - Merging frontend with develop

Pull Request - State: closed - Opened by henhok about 5 years ago

#41 - COBAEIF fails to run thru GUI

Issue - State: closed - Opened by henhok about 5 years ago
Labels: bug

#40 - Config_file_converter fails to include last line in physio config

Issue - State: closed - Opened by henhok about 5 years ago
Labels: bug

#39 - Export parameters/physiology buttons don't work

Issue - State: closed - Opened by henhok about 5 years ago
Labels: bug

#38 - Neuron group numbering in left panel does not match neuron group index

Issue - State: closed - Opened by henhok about 5 years ago
Labels: bug

#37 - More Tests Needed

Issue - State: open - Opened by Vafa-Andalibi about 5 years ago
Labels: enhancement

#36 - Setup TravisCI for the repository

Issue - State: closed - Opened by Vafa-Andalibi about 5 years ago - 2 comments
Labels: enhancement

#35 - Menu for Working Demos in GUI

Issue - State: closed - Opened by Vafa-Andalibi about 5 years ago - 1 comment
Labels: enhancement

#34 - Improve Documentation and Examples

Issue - State: open - Opened by Vafa-Andalibi about 5 years ago - 1 comment
Labels: enhancement, help wanted

#33 - Add home button

Issue - State: closed - Opened by Vafa-Andalibi about 5 years ago
Labels: enhancement

#32 - In windows Cpp device gives error

Issue - State: closed - Opened by sivanni about 5 years ago - 2 comments
Labels: more info needed

#31 - Automatically create a pdf with simple rasterplots of all configs in a batch run

Issue - State: closed - Opened by henhok about 5 years ago - 2 comments
Labels: enhancement, more info needed

#30 - Add cython to list of devices

Issue - State: closed - Opened by henhok about 5 years ago - 1 comment
Labels: enhancement

#29 - Add function to precompute connections before run

Issue - State: open - Opened by henhok about 5 years ago - 2 comments
Labels: enhancement, more info needed

#28 - pytest config files changed

Issue - State: closed - Opened by sivanni about 5 years ago - 2 comments
Labels: bug

#27 - pandas key error

Issue - State: closed - Opened by sivanni about 5 years ago - 4 comments
Labels: bug, more info needed

#26 - Create a tour for the UI using introjs

Issue - State: closed - Opened by Vafa-Andalibi about 5 years ago
Labels: enhancement

#25 - Has cluster run gone broken?

Issue - State: closed - Opened by henhok about 5 years ago - 5 comments
Labels: bug, more info needed

#24 - CxSystem expects brian connection files even if load_connection set to 0 for every synapse

Issue - State: closed - Opened by henhok about 5 years ago - 2 comments
Labels: bug

#23 - JSONified Rev2_step2 configs won't run thru GUI

Issue - State: closed - Opened by henhok about 5 years ago - 3 comments
Labels: bug

#22 - JSON output from config_file_converter is not human-readable

Issue - State: closed - Opened by henhok about 5 years ago - 5 comments
Labels: wontfix, more info needed

#21 - Old style CM.run() has stopped working

Issue - State: closed - Opened by henhok about 5 years ago
Labels: bug

#20 - GeNN suddenly not working anymore?

Issue - State: closed - Opened by henhok about 5 years ago - 5 comments
Labels: bug

#19 - Running more than one parallel simulation on CPP device crashes the server

Issue - State: closed - Opened by henhok about 5 years ago - 2 comments
Labels: bug

#18 - Running multiple trials from GUI doesn't work

Issue - State: closed - Opened by henhok about 5 years ago
Labels: bug

#17 - Curly braces for array runs doesn't work with JSON

Issue - State: closed - Opened by henhok about 5 years ago
Labels: bug

#16 - Messing up ongoing simulations by frantically pressing the simulate button

Issue - State: closed - Opened by henhok about 5 years ago - 2 comments
Labels: bug, invalid

#15 - Keyword for monitoring vm and all conductances of particular cells

Issue - State: open - Opened by henhok about 5 years ago
Labels: enhancement, good first issue

#14 - Out of memory when running Markram model step 1 on cpp device

Issue - State: closed - Opened by henhok about 5 years ago - 6 comments
Labels: invalid

#13 - "Favourites" in physio config

Issue - State: open - Opened by henhok about 5 years ago
Labels: enhancement

#12 - Moving from network editor to cell type config

Issue - State: open - Opened by henhok about 5 years ago
Labels: enhancement, help wanted

#11 - Dynamic list of neuron subtypes

Issue - State: closed - Opened by henhok about 5 years ago - 2 comments
Labels: enhancement, more info needed

#10 - Test develop

Pull Request - State: closed - Opened by sivanni over 5 years ago

#9 - Test develop

Pull Request - State: closed - Opened by sivanni over 5 years ago

#8 - Output path not saved to self when array run

Issue - State: closed - Opened by sivanni over 5 years ago - 2 comments
Labels: enhancement, more info needed

#7 - Test develop

Pull Request - State: closed - Opened by sivanni over 5 years ago

#6 - Re-organize files for clarity

Issue - State: closed - Opened by henhok over 5 years ago - 2 comments
Labels: enhancement

#5 - Cluster debug

Pull Request - State: closed - Opened by henhok over 5 years ago

#4 - Create setup.py etc to allow installation via pip

Issue - State: closed - Opened by henhok over 5 years ago - 3 comments
Labels: enhancement

#3 - Test develop

Pull Request - State: closed - Opened by sivanni over 5 years ago

#2 - Minor hotfixes

Pull Request - State: closed - Opened by henhok over 5 years ago - 1 comment

#1 - Separate class for name monster?

Issue - State: closed - Opened by sivanni over 5 years ago - 3 comments
Labels: enhancement, more info needed

GitHub / VisualNeuroscience-UH/CxSystem2 issues and pull requests