Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / VisBOL/visbol-js issues and pull requests

#129 - Visualising parent terms if no specific icon exists for the child

Issue - State: open - Opened by JMante1 about 1 month ago - 1 comment

#128 - Bump qs from 6.5.1 to 6.5.3

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#127 - getDisplayListJson - Explicit SO

Pull Request - State: open - Opened by linediconsine over 2 years ago - 3 comments

#126 - getDisplayListJson provide a Json with information about the sbol com…

Pull Request - State: closed - Opened by linediconsine over 2 years ago - 4 comments

#125 - Bump urijs from 1.19.2 to 1.19.11

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#123 - Bump urijs from 1.19.2 to 1.19.10

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#122 - Bump urijs from 1.19.2 to 1.19.9

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#121 - Bump urijs from 1.19.2 to 1.19.8

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#120 - Problem with designs with duplicate parts

Issue - State: open - Opened by cjmyers about 3 years ago

#119 - Bump urijs from 1.19.2 to 1.19.7

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#118 - Bump urijs from 1.19.2 to 1.19.6

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#117 - Visualizing Interactions Not In Root ModuleDefinition

Issue - State: open - Opened by nroehner almost 4 years ago

#116 - Bump urijs from 1.19.2 to 1.19.4

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#115 - All visbol on synbiohub.org shows the overall annotation

Issue - State: open - Opened by JMante1 about 4 years ago - 1 comment

#114 - Engineered Region and No Glyph Assigned on the DNA line

Issue - State: open - Opened by cjmyers about 4 years ago

#113 - Non coding rna gene rendering

Pull Request - State: closed - Opened by benjhatch almost 5 years ago - 1 comment

#112 - depicting Component definitions without sequence

Issue - State: open - Opened by cjmyers almost 5 years ago

#111 - Issue with Component Definition with Sequence Constraints

Issue - State: open - Opened by PrashantVaidyanathan about 5 years ago - 8 comments

#110 - crash in minified version

Issue - State: closed - Opened by FilippoPolo about 5 years ago - 8 comments

#109 - Plotting genes with their appropriate lengths and gaps

Issue - State: closed - Opened by multimeric over 5 years ago - 2 comments

#108 - "adds label fixed position and truncates string lengths"

Pull Request - State: closed - Opened by jvscholz over 5 years ago

#107 - Fixed rendering of riboswitch glyph

Pull Request - State: closed - Opened by jvscholz over 5 years ago

#106 - fixed glyh rendering of SO:0000409 and children

Pull Request - State: closed - Opened by jvscholz over 5 years ago

#105 - change composite mapping label color method

Pull Request - State: closed - Opened by asadeg02 almost 6 years ago

#104 - Problem with visbol composite rendering

Issue - State: closed - Opened by cjmyers almost 6 years ago - 4 comments
Labels: bug, Priority

#103 - Merged interaction

Pull Request - State: closed - Opened by asadeg02 almost 6 years ago - 5 comments

#102 - Render SO terms using glyph that is the nearest ancestor with a glyph

Issue - State: open - Opened by cjmyers almost 6 years ago
Labels: enhancement

#101 - Render binding_site (SO:0000409) operator glyph

Issue - State: closed - Opened by cjmyers almost 6 years ago - 1 comment
Labels: bug, Priority

#100 - Resolve bugs

Pull Request - State: closed - Opened by asadeg02 about 6 years ago - 2 comments

#99 - Error in browser rendering attached example

Issue - State: open - Opened by cjmyers about 6 years ago - 9 comments
Labels: bug, Priority

#98 - RNA degradation is not centered

Issue - State: closed - Opened by cjmyers about 6 years ago - 2 comments
Labels: bug, Priority

#97 - Complex formation involving RNA has exception in the browser

Issue - State: open - Opened by cjmyers about 6 years ago - 5 comments
Labels: bug, Priority

#96 - RNA production not rendering properly.

Issue - State: closed - Opened by cjmyers about 6 years ago - 1 comment
Labels: bug, Priority

#95 - Updated the way composite parts are detected

Pull Request - State: closed - Opened by dany-fu about 6 years ago

#94 - Remove redundant rendering of singular parts

Issue - State: closed - Opened by dany-fu about 6 years ago - 1 comment
Labels: enhancement, Priority

#93 - Support new style of SBOL file that includes Interactions in ModuleDefinitions

Issue - State: open - Opened by cjmyers about 6 years ago
Labels: enhancement

#92 - Change how composite parts are rendered

Issue - State: open - Opened by dany-fu about 6 years ago - 3 comments
Labels: enhancement

#91 - Change how composite part is found

Issue - State: closed - Opened by dany-fu about 6 years ago - 3 comments
Labels: bug, Priority

#90 - Tooltip should show more information

Issue - State: open - Opened by dany-fu about 6 years ago
Labels: bug

#89 - Don't rely on displayIds for SBOL parsing

Issue - State: open - Opened by dany-fu about 6 years ago - 1 comment
Labels: bug

#88 - simulation should be stimulation

Issue - State: closed - Opened by cjmyers about 6 years ago - 1 comment
Labels: bug, Priority

#87 - Put back border

Issue - State: closed - Opened by dany-fu over 6 years ago - 1 comment
Labels: question

#86 - What is the purpose of "hideDNA" in glyphs such as operator?

Issue - State: open - Opened by udp over 6 years ago - 4 comments
Labels: bug

#85 - Flatten interactions

Issue - State: open - Opened by dany-fu over 6 years ago - 3 comments
Labels: enhancement

#83 - Unify entry points for SynBioHub and VisBOL

Issue - State: open - Opened by dany-fu over 6 years ago
Labels: enhancement

#82 - Interactions

Pull Request - State: closed - Opened by asadeg02 over 6 years ago - 5 comments

#81 - Revert "Limit with omitted"

Pull Request - State: closed - Opened by cjmyers over 6 years ago

#80 - Revert "Limit with omitted"

Pull Request - State: closed - Opened by cjmyers over 6 years ago - 3 comments

#79 - Limit with omitted

Pull Request - State: closed - Opened by dany-fu over 6 years ago - 4 comments

#78 - Updated non-dna glyphs

Pull Request - State: closed - Opened by dany-fu over 6 years ago

#77 - non-DNA glyphs

Pull Request - State: closed - Opened by dany-fu over 6 years ago

#76 - Composite glyph

Pull Request - State: closed - Opened by dany-fu over 6 years ago

#75 - Hide strings of no glyph assigned or generic sequence features

Issue - State: open - Opened by cjmyers over 6 years ago - 3 comments
Labels: enhancement

#74 - Add ability to view different portions of a large object

Issue - State: open - Opened by cjmyers over 6 years ago
Labels: enhancement

#73 - Set a limit on number of glyphs to render in visbol

Issue - State: open - Opened by cjmyers over 6 years ago - 2 comments
Labels: enhancement

#72 - SO:0000035 rendered as generic engineered region

Issue - State: closed - Opened by cjmyers over 6 years ago - 2 comments
Labels: Priority, Needs Testing

#71 - Hovering info box can't follow horizontal scrolling

Issue - State: closed - Opened by cjmyers over 6 years ago - 7 comments
Labels: bug, question, Priority

#70 - Add glyphs

Pull Request - State: closed - Opened by asadeg02 over 6 years ago

#69 - Use 3 A's for PolyA glyph

Issue - State: closed - Opened by cjmyers over 6 years ago - 1 comment
Labels: Priority, Glyph

#68 - Add glyphs

Pull Request - State: closed - Opened by asadeg02 over 6 years ago - 1 comment

#67 - Restriction enzyme site and protease site glyphs are reversed

Issue - State: closed - Opened by cjmyers over 6 years ago - 4 comments
Labels: Priority, Glyph

#66 - Base and junction glyphs are reversed

Issue - State: closed - Opened by cjmyers over 6 years ago - 1 comment
Labels: Priority, Glyph

#65 - 3' overhang is missing a glpyh

Issue - State: closed - Opened by cjmyers over 6 years ago - 3 comments
Labels: Priority, Glyph

#64 - Add support for simple interactions with DNA strand

Issue - State: closed - Opened by cjmyers over 6 years ago - 10 comments
Labels: enhancement, Priority

#63 - Add support for non-DNA glyphs

Issue - State: closed - Opened by cjmyers over 6 years ago - 20 comments
Labels: enhancement, Priority

#62 - Problem with references to deleted objects

Issue - State: closed - Opened by cjmyers over 6 years ago
Labels: bug, Needs Testing

#61 - display unspecified or no-glyph-assigned depending on role existence

Pull Request - State: closed - Opened by nathanwilk7 over 6 years ago - 1 comment

#60 - No glyph assigned

Pull Request - State: closed - Opened by nathanwilk7 over 6 years ago - 2 comments

#59 - No Glyph Assigned

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 1 comment

#58 - first draft

Pull Request - State: closed - Opened by nathanwilk7 over 6 years ago - 9 comments

#57 - Signature

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 1 comment
Labels: Priority, Glyph

#56 - Primer Binding Site

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 2 comments
Labels: Priority, Glyph

#55 - PolyA Site

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 1 comment

#54 - Origin of Replication

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 4 comments
Labels: Priority, Glyph

#53 - Omitted Detail

Issue - State: open - Opened by nathanwilk7 over 6 years ago
Labels: enhancement, Priority

#52 - Operator / Binding Site

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 2 comments
Labels: Priority, Glyph

#51 - Non-Coding RNA Gene

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 2 comments
Labels: Priority, Glyph

#50 - fixed so terms

Pull Request - State: closed - Opened by nathanwilk7 over 6 years ago

#49 - Sticky Restriction Site

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 4 comments
Labels: Priority, Glyph

#48 - 5' Overhang Site

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 3 comments
Labels: Priority, Glyph

#47 - Engineered Region

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 1 comment

#46 - Composite Glyph

Issue - State: closed - Opened by nathanwilk7 over 6 years ago - 1 comment
Labels: Priority, Glyph

#45 - Stability

Pull Request - State: closed - Opened by nathanwilk7 over 6 years ago

#44 - Biopolymers

Pull Request - State: closed - Opened by nathanwilk7 over 6 years ago

#42 - Ribonuclease site

Pull Request - State: closed - Opened by nathanwilk7 almost 7 years ago

#41 - protease site done

Pull Request - State: closed - Opened by nathanwilk7 almost 7 years ago

#35 - Add support for combinatorial design

Issue - State: open - Opened by cjmyers almost 7 years ago
Labels: enhancement

#34 - Update to support SBOLv 2.0 glyphs

Issue - State: closed - Opened by cjmyers almost 7 years ago - 1 comment
Labels: enhancement, Priority

#32 - Circular parts should be displayable in a circular view

Issue - State: open - Opened by cjmyers over 7 years ago - 1 comment
Labels: enhancement

#31 - Add the ability to switch to a ruler view of the sequence

Issue - State: open - Opened by cjmyers over 7 years ago
Labels: enhancement

#30 - Enable VisBol webservice for creating in various formats

Issue - State: open - Opened by cjmyers over 7 years ago
Labels: enhancement

#29 - Add ability to hide specified glyphs

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: enhancement

#26 - Reverse orientation parts showing up inline

Issue - State: closed - Opened by cjmyers over 7 years ago - 4 comments
Labels: bug, Needs Testing

#21 - Make coloring of the part label composite match the label in the sub-part below

Issue - State: closed - Opened by cjmyers over 7 years ago - 1 comment
Labels: enhancement

#19 - Need to carefully consider how to represent SA with Roles

Issue - State: open - Opened by cjmyers over 7 years ago
Labels: enhancement

#16 - Indicate MapsTos for Components/FunctionalComponents/Modules

Issue - State: open - Opened by cjmyers over 7 years ago
Labels: enhancement

#15 - ModuleDefinition view should show Modules/Interactions

Issue - State: open - Opened by cjmyers over 7 years ago - 2 comments
Labels: enhancement