Ecosyste.ms: Issues

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GitHub / VirtualFlyBrain/VFB_connect issues and pull requests

#85 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.2

Pull Request - State: closed - Opened by snyk-bot over 2 years ago

#84 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.2

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#83 - suggested easier warning (could maybe be made an error)

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#82 - "'bool' object is not iterable" on VfbConnect()

Issue - State: closed - Opened by YijieYin over 2 years ago - 3 comments

#81 - [Snyk] Security upgrade mistune from 0.8.4 to 2.0.3

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#80 - Defaulting to Neo4j V4 and falling back to v3.

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#79 - defaulting to NEO4J v4.x

Pull Request - State: closed - Opened by Robbie1977 almost 3 years ago

#78 - created folder permissions issues during upgrade/uninstall

Issue - State: open - Opened by Robbie1977 almost 3 years ago - 2 comments

#77 - Update cross_server_tools.py

Pull Request - State: closed - Opened by dosumis almost 3 years ago - 1 comment

#76 - Edit notebooks so that dataframes only show first five entries

Issue - State: open - Opened by dosumis almost 3 years ago

#75 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.2

Pull Request - State: closed - Opened by snyk-bot about 3 years ago - 3 comments

#74 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.0

Pull Request - State: closed - Opened by snyk-bot about 3 years ago

#73 - [Snyk] Security upgrade mistune from 0.8.4 to 2.0.1

Pull Request - State: closed - Opened by snyk-bot about 3 years ago

#72 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.0rc1

Pull Request - State: closed - Opened by snyk-bot about 3 years ago

#71 - Adding Neo4j v4.2 support

Pull Request - State: closed - Opened by Robbie1977 over 3 years ago

#69 - Check file Manifest file values for reuse in Geppetto

Issue - State: open - Opened by Robbie1977 over 3 years ago
Labels: question

#68 - vc.get_superclasses 'direct' parameter passing

Issue - State: closed - Opened by hkir-dev over 3 years ago

#67 - Type summary function

Issue - State: open - Opened by dosumis over 3 years ago - 4 comments

#66 - Automated query generation

Pull Request - State: open - Opened by Robbie1977 almost 4 years ago

#65 - Proposed breaking changes for VFB_connect 2.0

Issue - State: open - Opened by dosumis almost 4 years ago

#64 - Doc cleanup

Issue - State: open - Opened by dosumis almost 4 years ago

#63 - Documentation notebook examples to add

Issue - State: open - Opened by dosumis almost 4 years ago

#62 - Dataset missing from CATMAID neurons

Issue - State: open - Opened by mmc46 almost 4 years ago - 2 comments

#61 - NeuroFly workshop feature requests

Issue - State: open - Opened by schlegelp almost 4 years ago

#60 - Do not merge - for comparison only

Pull Request - State: closed - Opened by Robbie1977 almost 4 years ago

#59 - Create docs.yml

Pull Request - State: closed - Opened by Robbie1977 almost 4 years ago

#58 - Fix documentation

Issue - State: closed - Opened by dosumis almost 4 years ago

#57 - VFB workshop feature requests

Issue - State: open - Opened by schlegelp almost 4 years ago - 2 comments

#55 - Interface directly with navis API

Issue - State: open - Opened by dosumis almost 4 years ago

#54 - get_connected_neuron_by_type - make upstream/downstream_type kwarg

Issue - State: closed - Opened by dosumis almost 4 years ago - 1 comment

#53 - Connected types optimisation

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#52 - get_connected_neurons_by_type: return count of neurons below cutoff as soft warning?

Issue - State: open - Opened by admclachlan almost 4 years ago
Labels: enhancement

#51 - Add find common ancestors query

Issue - State: open - Opened by dosumis almost 4 years ago - 1 comment

#50 - summary gen, cast to string makes robust to type/None

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#49 - Lots of new features

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#48 - Adding handling for manual OBJ files

Pull Request - State: closed - Opened by Robbie1977 almost 4 years ago

#47 - pdoc test plus extended output on connectivity by type

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#46 - get_vfb_link now takes template label & checks its validity.

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#45 - Refactor get_vfb_link

Issue - State: open - Opened by dosumis almost 4 years ago

#44 - Fixed bug in summary gen

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#43 - Working NBLAST

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#42 - allow stomp

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#41 - Fixes #39

Pull Request - State: closed - Opened by dosumis almost 4 years ago - 1 comment

#39 - Add option on get_images to allow stomp.

Issue - State: closed - Opened by dosumis almost 4 years ago

#38 - Add NBLAST queries

Issue - State: closed - Opened by dosumis almost 4 years ago

#37 - Refactoring + addition new methods

Pull Request - State: closed - Opened by dosumis almost 4 years ago

#36 - JPATH content filters

Pull Request - State: closed - Opened by dosumis almost 4 years ago - 1 comment

#35 - Add wrapper for downloading images.

Issue - State: closed - Opened by dosumis almost 4 years ago

#34 - Add support for connectivity queries by weight

Issue - State: closed - Opened by dosumis almost 4 years ago

#33 - Finish adding complete documentation for methods

Issue - State: closed - Opened by dosumis about 4 years ago

#32 - EPIC: Build API wrapper for VFB_connect

Issue - State: closed - Opened by dosumis about 4 years ago - 1 comment

#31 - Create json_schema_visual_doc.md

Pull Request - State: open - Opened by dosumis about 4 years ago

#30 - Document JSON schema relationship to information on website

Issue - State: open - Opened by dosumis about 4 years ago

#29 - Add output filtering functions

Issue - State: closed - Opened by dosumis about 4 years ago - 1 comment

#28 - changes in master and not in pipeline2

Pull Request - State: closed - Opened by Robbie1977 about 4 years ago

#27 - pipeline2 servers and queries

Pull Request - State: closed - Opened by dosumis over 4 years ago - 1 comment

#26 - Support batch queries for xrefs

Issue - State: open - Opened by dosumis over 4 years ago

#25 - Add support for NBLAST queries

Issue - State: closed - Opened by dosumis over 4 years ago

#24 - Improve exception handling for bad query arg values

Issue - State: open - Opened by dosumis over 4 years ago

#23 - Fixes #19

Pull Request - State: closed - Opened by dosumis over 4 years ago

#22 - Batch queries

Pull Request - State: closed - Opened by dosumis over 4 years ago - 1 comment

#21 - Allow query for all xrefs per Site Fixes #20 (+ new test)

Pull Request - State: closed - Opened by dosumis over 4 years ago

#20 - Allow query for all xrefs per Site

Issue - State: closed - Opened by dosumis over 4 years ago

#19 - Fix bug preventing spec of alternate neo servers

Issue - State: closed - Opened by dosumis over 4 years ago

#18 - Correct src link on PyPi

Issue - State: closed - Opened by dosumis over 4 years ago

#17 - Add batching for large queries.

Issue - State: closed - Opened by dosumis over 4 years ago - 2 comments

#16 - Add functions to facilitate bulk download

Issue - State: open - Opened by dosumis over 4 years ago

#15 - get terms by DataSet

Issue - State: open - Opened by dosumis over 4 years ago

#14 - Add method to check if neuron (or other image) is in NBLAST matrix

Issue - State: open - Opened by dosumis over 4 years ago - 1 comment

#13 - Fixes #6 (query by filename)

Pull Request - State: closed - Opened by dosumis over 4 years ago

#12 - More refac

Pull Request - State: closed - Opened by dosumis over 4 years ago

#11 - Create LICENSE

Pull Request - State: closed - Opened by dosumis over 4 years ago

#10 - All termInfo queries now take list of short_forms.

Pull Request - State: closed - Opened by dosumis over 4 years ago

#9 - Add ID mapping method

Issue - State: closed - Opened by dosumis over 4 years ago - 1 comment

#8 - Release on PyPi

Issue - State: closed - Opened by dosumis over 4 years ago

#7 - Add simple examples in notebook snippets

Issue - State: closed - Opened by dosumis over 4 years ago

#6 - Add lookup by Filename

Issue - State: closed - Opened by dosumis over 4 years ago

#5 - Term info query refactor

Pull Request - State: closed - Opened by dosumis over 4 years ago

#4 - Add lookup by accession

Issue - State: closed - Opened by dosumis over 4 years ago - 1 comment

#3 - Better tests & some doc

Pull Request - State: closed - Opened by dosumis over 4 years ago

#2 - Tidying up

Pull Request - State: closed - Opened by dosumis over 4 years ago

#1 - Tidying up

Pull Request - State: closed - Opened by dosumis almost 5 years ago