Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / VirtualFlyBrain/VFB_connect issues and pull requests

#221 - Add query for cell type by gene expression.

Issue - State: open - Opened by dosumis 6 months ago

#220 - Adding pulling of individual synapses

Pull Request - State: open - Opened by Robbie1977 6 months ago

#219 - colour minimum distances

Issue - State: open - Opened by Clare72 6 months ago

#217 - removing white from the random colour selection

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#215 - fix to ensure default return type set

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#214 - ensuring strings are used for acc used in neo4j

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#213 - Only showing vfb. help if launched that way

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#209 - New version pub query

Pull Request - State: closed - Opened by dosumis 6 months ago

#208 - Improved handling of xrefs

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#207 - match links on accession and don't make lists

Pull Request - State: closed - Opened by Clare72 6 months ago

#204 - increase output of get_transcriptomic_profile

Pull Request - State: closed - Opened by Clare72 6 months ago

#203 - [Snyk] Fix for 7 vulnerabilities

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#202 - allowing limit of DBS to data source

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#201 - [Snyk] Fix for 10 vulnerabilities

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#199 - updating to latest req

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#197 - Speedup on id lookup

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#195 - include symbols in templates

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#194 - Fixed by in connected_neuron_by_type

Pull Request - State: closed - Opened by dosumis 6 months ago - 2 comments

#193 - adding version reporting vfb.__version__

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#191 - handling unsortable results

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#190 - Print black colour for None

Pull Request - State: closed - Opened by Clare72 6 months ago

#188 - Fix for default template and merged thumbnail plots

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#186 - get_dbs fix for symbols

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#185 - Update README.md

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#184 - new neuron pub query

Pull Request - State: closed - Opened by dosumis 6 months ago

#182 - Forcing numpy < 2.0.0

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#181 - Fix for single string calls on vfb.terms()

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#176 - adding solr search function

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#175 - Fixed get_connected_neurons_by_type

Pull Request - State: closed - Opened by dosumis 6 months ago - 4 comments

#174 - improvements to colour choices for plots

Pull Request - State: closed - Opened by Clare72 6 months ago

#172 - only supports major version

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#169 - vfb.terms breaking changes in interface

Issue - State: closed - Opened by jefferis 6 months ago

#168 - vfb.term - optionally restrict by gross type

Issue - State: closed - Opened by dosumis 6 months ago - 1 comment

#167 - template default fix

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#166 - Predicted NTs

Pull Request - State: closed - Opened by Clare72 6 months ago

#163 - Fix for NoneType issue in python 3.9

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#161 - General bug fixes and dependency version resolving

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#159 - Dependancy fixes and global load limit

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#157 - making VFBTerms/VFBTerm hashable and comparable

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#155 - adding min val filters on partners and similar plots

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#153 - Fixes for colour by tools as well as lookup_name

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#149 - minor fixes and transcriptomic profile formatting

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#148 - Adding wrappers for owl (owlery) and cypher (pdb/neo4j) queries

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#139 - [Snyk] Fix for 10 vulnerabilities

Pull Request - State: open - Opened by Robbie1977 6 months ago

#138 - [Snyk] Security upgrade numpy from 1.21.3 to 1.22.2

Pull Request - State: open - Opened by Robbie1977 6 months ago

#136 - [Snyk] Security upgrade zipp from 3.15.0 to 3.19.1

Pull Request - State: open - Opened by Robbie1977 6 months ago

#135 - [Snyk] Security upgrade zipp from 3.15.0 to 3.19.1

Pull Request - State: closed - Opened by Robbie1977 6 months ago

#134 - [Snyk] Security upgrade numpy from 1.21.3 to 1.22.2

Pull Request - State: open - Opened by Robbie1977 6 months ago

#133 - [Snyk] Security upgrade numpy from 1.21.3 to 1.22.2

Pull Request - State: open - Opened by Robbie1977 6 months ago

#132 - Return leaf node parent type/class for individuals.

Issue - State: closed - Opened by Robbie1977 7 months ago - 2 comments

#131 - Return symbol over labels when existing

Issue - State: closed - Opened by Robbie1977 7 months ago - 2 comments

#130 - Swap all to default to summary output

Issue - State: closed - Opened by Robbie1977 7 months ago - 1 comment

#129 - feature request: method to get a list of all datasets

Issue - State: closed - Opened by schlegelp 7 months ago - 1 comment

#128 - Removing :Deprecated Site/API notes from xrefs and DB

Pull Request - State: open - Opened by Robbie1977 7 months ago

#127 - [Snyk] Security upgrade setuptools from 50.3.2 to 70.0.0

Pull Request - State: open - Opened by Robbie1977 7 months ago

#126 - [Snyk] Security upgrade setuptools from 50.3.2 to 70.0.0

Pull Request - State: open - Opened by Robbie1977 7 months ago

#124 - [Snyk] Security upgrade zipp from 3.15.0 to 3.19.1

Pull Request - State: open - Opened by Robbie1977 7 months ago

#123 - [Snyk] Security upgrade zipp from 3.15.0 to 3.19.1

Pull Request - State: open - Opened by Robbie1977 7 months ago

#122 - [Snyk] Security upgrade anyio from 3.7.1 to 4.4.0

Pull Request - State: open - Opened by Robbie1977 8 months ago

#121 - [Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2

Pull Request - State: open - Opened by Robbie1977 8 months ago

#120 - [Snyk] Security upgrade urllib3 from 2.0.7 to 2.2.2

Pull Request - State: open - Opened by Robbie1977 8 months ago

#119 - [Snyk] Fix for 3 vulnerabilities

Pull Request - State: open - Opened by Robbie1977 9 months ago

#118 - [Snyk] Security upgrade pillow from 9.5.0 to 10.3.0

Pull Request - State: open - Opened by Robbie1977 11 months ago

#117 - [Snyk] Fix for 14 vulnerabilities

Pull Request - State: open - Opened by Robbie1977 12 months ago

#116 - [Snyk] Security upgrade pillow from 9.5.0 to 10.2.0

Pull Request - State: open - Opened by Robbie1977 about 1 year ago

#115 - [Snyk] Security upgrade pillow from 9.5.0 to 10.2.0

Pull Request - State: open - Opened by Robbie1977 about 1 year ago

#114 - [Snyk] Security upgrade pillow from 9.5.0 to 10.2.0

Pull Request - State: open - Opened by Robbie1977 about 1 year ago

#113 - [Snyk] Security upgrade fonttools from 4.38.0 to 4.43.0

Pull Request - State: open - Opened by Robbie1977 about 1 year ago

#112 - [Snyk] Security upgrade jupyter-server from 1.24.0 to 2.11.2

Pull Request - State: open - Opened by Robbie1977 about 1 year ago

#111 - [Snyk] Security upgrade pillow from 9.5.0 to 10.0.0

Pull Request - State: open - Opened by Robbie1977 over 1 year ago

#110 - [Snyk] Security upgrade tornado from 6.2 to 6.3.3

Pull Request - State: open - Opened by Robbie1977 over 1 year ago

#109 - [Snyk] Security upgrade pillow from 9.5.0 to 10.0.1

Pull Request - State: open - Opened by Robbie1977 over 1 year ago

#108 - Bringing upto latest so tests work

Pull Request - State: closed - Opened by Robbie1977 over 1 year ago

#107 - broken link to VFB_json in README

Issue - State: open - Opened by jefferis over 1 year ago

#106 - Support retrieval of scxa anndata files by accession

Issue - State: open - Opened by dosumis over 1 year ago

#105 - transcriptomic query functions

Pull Request - State: closed - Opened by Clare72 over 1 year ago - 6 comments

#104 - Queries for transcriptomic data

Issue - State: closed - Opened by dosumis over 1 year ago - 4 comments

#103 - [Snyk] Security upgrade jupyter-server from 1.24.0 to 2.7.2

Pull Request - State: open - Opened by Robbie1977 over 1 year ago

#102 - [Snyk] Security upgrade tornado from 6.2 to 6.3.3

Pull Request - State: open - Opened by Robbie1977 over 1 year ago

#101 - [Snyk] Security upgrade tornado from 6.2 to 6.3.2

Pull Request - State: open - Opened by Robbie1977 almost 2 years ago

#100 - [Snyk] Security upgrade numpy from 1.21.3 to 1.22.2

Pull Request - State: closed - Opened by Robbie1977 almost 2 years ago

#99 - [Snyk] Security upgrade numpy from 1.21.3 to 1.22.2

Pull Request - State: closed - Opened by Robbie1977 almost 2 years ago

#98 - [Snyk] Security upgrade ipython from 7.34.0 to 8.10.0

Pull Request - State: closed - Opened by Robbie1977 about 2 years ago

#97 - [Snyk] Security upgrade setuptools from 50.3.2 to 65.5.1

Pull Request - State: closed - Opened by Robbie1977 about 2 years ago

#96 - [Snyk] Security upgrade setuptools from 50.3.2 to 65.5.1

Pull Request - State: closed - Opened by Robbie1977 about 2 years ago

#95 - [Snyk] Security upgrade setuptools from 50.3.2 to 65.5.1

Pull Request - State: closed - Opened by Robbie1977 about 2 years ago

#94 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.2

Pull Request - State: closed - Opened by Robbie1977 about 2 years ago

#93 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.2

Pull Request - State: closed - Opened by snyk-bot over 2 years ago

#92 - [Snyk] Security upgrade setuptools from 50.3.2 to 65.5.1

Pull Request - State: closed - Opened by snyk-bot over 2 years ago

#91 - [Snyk] Security upgrade setuptools from 50.3.2 to 65.5.1

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#90 - Update with new Queries

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#89 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.2

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#88 - [Snyk] Security upgrade numpy from 1.16.6 to 1.22.2

Pull Request - State: closed - Opened by Robbie1977 over 2 years ago

#87 - No clone for VFB_00102293

Issue - State: open - Opened by YijieYin over 2 years ago

#86 - template mismatch

Issue - State: closed - Opened by YijieYin over 2 years ago - 7 comments