VertebrateResequencing/wr issues and pull requests

#464 - Add new flag to specify queues to avoid

Pull Request - State: closed - Opened by rk1274 4 months ago

#463 - Add extra logging during job execution; runner logs LSF job id.

Pull Request - State: closed - Opened by sb10 5 months ago

#462 - Fix child process termination.

Pull Request - State: closed - Opened by mjkw31 5 months ago

#461 - Add option to have runners log to files

Pull Request - State: closed - Opened by sb10 5 months ago

#460 - Use up-to-date go-daemon version.

Pull Request - State: closed - Opened by mjkw31 6 months ago

#459 - Bump github.com/docker/docker from 27.0.3+incompatible to 27.1.1+incompatible

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies

#458 - Bump github.com/docker/docker from 27.0.3+incompatible to 27.1.0+incompatible

Pull Request - State: closed - Opened by dependabot[bot] 6 months ago - 1 comment
Labels: dependencies

#457 - Update to latest deps for sec vulns.

Pull Request - State: closed - Opened by sb10 7 months ago

#456 - Update to latest deps and test with latest go

Pull Request - State: closed - Opened by sb10 over 1 year ago

#456 - Update to latest deps and test with latest go

Pull Request - State: closed - Opened by sb10 over 1 year ago

#455 - Bump github.com/docker/distribution from 2.8.1+incompatible to 2.8.2+incompatible

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#454 - Bump github.com/docker/docker from 20.10.9+incompatible to 20.10.24+incompatible

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#453 - wr manager in cloud mode fails to update stats of reserved cpus when OS image is not available

Issue - State: open - Opened by jmtcsngr almost 2 years ago - 2 comments
Labels: bug

#452 - Bump golang.org/x/crypto from 0.0.0-20210921155107-089bfa567519 to 0.1.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#451 - Bump golang.org/x/net from 0.0.0-20220728030405-41545e8bf201 to 0.7.0

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#450 - Bump golang.org/x/text from 0.3.7 to 0.3.8

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#449 - Bump github.com/containerd/containerd from 1.6.6 to 1.6.18

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 1 comment
Labels: dependencies

#448 - Limits not always working?

Issue - State: open - Opened by sb10 about 2 years ago - 1 comment
Labels: bug

#447 - Resolve #446: Handle long job names in LSF.

Pull Request - State: closed - Opened by sb10 about 2 years ago - 1 comment

#446 - `parseBjobs` fails with long jobnames

Issue - State: closed - Opened by mcshane about 2 years ago - 5 comments
Labels: bug

#445 - Feature request: list of running/incomplete jobs

Issue - State: open - Opened by RuthEberhardt over 2 years ago
Labels: enhancement

#444 - Wrong Cwd reported in status while running

Issue - State: open - Opened by sb10 over 2 years ago - 1 comment
Labels: bug

#443 - Resolve #441: New --destroy host option for cloud servers cmd.

Pull Request - State: closed - Opened by sb10 over 2 years ago - 1 comment

#442 - LSF queue fix

Pull Request - State: closed - Opened by sb10 over 2 years ago

#441 - Provide option to let wr manager know a worker needs to be destroyed

Issue - State: closed - Opened by jmtcsngr over 2 years ago - 3 comments
Labels: enhancement

#440 - Try to fix negative delay times

Pull Request - State: closed - Opened by sb10 almost 3 years ago - 1 comment

#439 - Resolve #438: Include Std* in json output if requested

Pull Request - State: closed - Opened by sb10 almost 3 years ago - 1 comment

#438 - StdOut and StdErr fields empty in json output

Issue - State: closed - Opened by dkj almost 3 years ago - 2 comments
Labels: bug

#437 - Update a dep to fix potential security vulnerability.

Pull Request - State: closed - Opened by sb10 about 3 years ago - 1 comment

#436 - LSF improvements

Pull Request - State: closed - Opened by sb10 about 3 years ago - 1 comment

#435 - Resolve #104: Add container support for docker and singularity.

Pull Request - State: closed - Opened by sb10 about 3 years ago - 1 comment

#434 - Can't get autocomplete to work

Issue - State: closed - Opened by muffato about 3 years ago - 3 comments
Labels: bug

#433 - Docs

Pull Request - State: closed - Opened by sb10 over 3 years ago

#432 - Docs

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#431 - Update containerd version via latest wr dep, for vulnerability fix.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#430 - Resolve #427: allow queue to be modified.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#429 - Resolve #426: Include the internal id in detailed job display.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#428 - Resolve #424: New --sync mode for add.

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#427 - wr mod: option to change the LSF queue

Issue - State: closed - Opened by mcshane over 3 years ago - 1 comment
Labels: enhancement

#426 - include the internal id on the web display

Issue - State: closed - Opened by mcshane over 3 years ago - 1 comment
Labels: enhancement

#425 - Resolve #419: OpenStack server destroy can first run user script.

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#424 - wr mode that adds a job and waits that it completes

Issue - State: closed - Opened by muffato over 3 years ago - 2 comments
Labels: enhancement

#423 - integrate refactored math functions to codebase

Pull Request - State: closed - Opened by ac55-sanger over 3 years ago - 1 comment

#422 - Resolve #298: unify kick and delete.

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#421 - refactor certificate functions and add tests

Pull Request - State: closed - Opened by ac55-sanger over 3 years ago - 1 comment

#420 - Resolve #212: enable a mount on spawned servers.

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#419 - OpenStack server destroy should allow user shutdown script

Issue - State: closed - Opened by sb10 over 3 years ago - 4 comments
Labels: enhancement

#418 - Resolve #416: add jittered backoff to retry delays

Pull Request - State: closed - Opened by sb10 over 3 years ago

#417 - Fix manager start not reading config file in PWD.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#416 - Retry backoff feature

Issue - State: closed - Opened by kjsanger over 3 years ago - 8 comments
Labels: enhancement

#415 - lint fix for travis test

Pull Request - State: closed - Opened by ac55-sanger over 3 years ago

#414 - Fix #325: Started & Ended return JSON null if nill.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#413 - Resolve #289: s3 database backups are direct.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#412 - Regularly recheck dead jobs.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#411 - Resolve #293: status shows dependency details.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#410 - Add new ConnectUsingConfig() method.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#409 - OpenStack: no longer require OS_PROJECT_ID if OS_PROJECT_NAME set

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#408 - Resolve #294: only half-hour-round time for calculating scheduler group.

Pull Request - State: closed - Opened by sb10 over 3 years ago

#407 - Resolve #307: add --age option to to only kill old jobs.

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#406 - Resolve #308 - improved behaviour when jobs are lost

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#405 - Refactor config package, integrate new logging

Pull Request - State: closed - Opened by ac55-sanger over 3 years ago - 1 comment

#404 - Fix recursion in currentDisk() to always ignore desired dirs.

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#403 - Update dependencies and to go 1.16

Pull Request - State: closed - Opened by sb10 over 3 years ago - 1 comment

#402 - Resolve #397: wr limit lists all limit groups.

Pull Request - State: closed - Opened by sb10 almost 4 years ago - 1 comment

#401 - Resolve #398 - suggest ports to use for high UID users.

Pull Request - State: closed - Opened by sb10 almost 4 years ago - 2 comments

#400 - --limit option for the wr status command is not ducumented

Issue - State: open - Opened by mgcam almost 4 years ago - 1 comment

#399 - Fix timestamp on server.CopyOver() files.

Pull Request - State: closed - Opened by sb10 almost 4 years ago

#398 - manager port allocation: automate it for high user ids

Issue - State: closed - Opened by muffato almost 4 years ago - 5 comments
Labels: enhancement

#397 - wr limit: list all current limit groups

Issue - State: closed - Opened by jmtcsngr almost 4 years ago - 1 comment
Labels: enhancement

#396 - Bump github.com/olekukonko/tablewriter from 0.0.4 to 0.0.5

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago
Labels: dependencies

#395 - Bump github.com/gophercloud/gophercloud from 0.12.0 to 0.16.0

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#394 - Bump k8s.io/api from 0.19.2 to 0.20.4

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#393 - Bump k8s.io/apimachinery from 0.19.2 to 0.20.4

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#392 - Bump k8s.io/apimachinery from 0.19.2 to 0.20.3

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#391 - Bump k8s.io/api from 0.19.2 to 0.20.3

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 2 comments
Labels: dependencies

#390 - Bump github.com/spf13/cobra from 1.0.0 to 1.1.3

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#389 - Bump github.com/spf13/cobra from 1.0.0 to 1.1.2

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 2 comments
Labels: dependencies

#388 - Remove k8s tests which are failing for unknown reasons

Pull Request - State: closed - Opened by sb10 almost 4 years ago - 1 comment

#387 - Resolve #304, #306 and #385

Pull Request - State: closed - Opened by sb10 almost 4 years ago - 1 comment

#386 - Bump github.com/ugorji/go/codec from 1.1.8 to 1.2.4

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#385 - add a running jobs only option to wr status

Issue - State: closed - Opened by srl147 almost 4 years ago - 2 comments
Labels: enhancement

#384 - Bump github.com/wtsi-ssg/wr from 0.1.1 to 0.1.2

Pull Request - State: closed - Opened by dependabot-preview[bot] almost 4 years ago - 1 comment
Labels: dependencies

#383 - Add refactored code for container package

Pull Request - State: closed - Opened by ac55-sanger almost 4 years ago - 1 comment

#382 - Add native support for public clouds such as AWS and GCP

Issue - State: open - Opened by sb10 about 4 years ago
Labels: enhancement

#381 - Bump k8s.io/api from 0.19.2 to 0.20.2

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 1 comment
Labels: dependencies

#380 - Bump k8s.io/apimachinery from 0.19.2 to 0.20.2

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 2 comments
Labels: dependencies

#379 - Bump github.com/ugorji/go/codec from 1.1.8 to 1.2.3

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 2 comments
Labels: dependencies

#378 - Bump github.com/gofrs/uuid from 3.3.0+incompatible to 3.4.0+incompatible

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 1 comment
Labels: dependencies

#377 - Bump github.com/gophercloud/gophercloud from 0.12.0 to 0.15.0

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 2 comments
Labels: dependencies

#374 - Bump k8s.io/api from 0.19.2 to 0.20.1

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 1 comment
Labels: dependencies

#370 - Bump github.com/jinzhu/configor from 1.2.0 to 1.2.1

Pull Request - State: closed - Opened by dependabot-preview[bot] about 4 years ago - 1 comment
Labels: dependencies

#365 - Bump github.com/fatih/color from 1.9.0 to 1.10.0

Pull Request - State: closed - Opened by dependabot-preview[bot] over 4 years ago - 1 comment
Labels: dependencies

#358 - Bump github.com/spf13/cobra from 1.0.0 to 1.1.1

Pull Request - State: closed - Opened by dependabot-preview[bot] over 4 years ago - 2 comments
Labels: dependencies

#331 - PeakDisk size is not excluding S3 mounts correctly

Issue - State: closed - Opened by sb10 over 4 years ago - 1 comment
Labels: bug

#325 - REST API: zero value job times are negative values instead of null

Issue - State: closed - Opened by sb10 over 4 years ago - 1 comment
Labels: bug

#320 - Are disk usage estimates correct when using mounts?

Issue - State: closed - Opened by sb10 over 4 years ago - 1 comment
Labels: question

#308 - Improve cromwell compatibility with new/improved behaviours

Issue - State: closed - Opened by sb10 over 4 years ago - 1 comment
Labels: enhancement

#307 - wr kill: --confirmdead should have an option to only apply to those that have been lost a long time

Issue - State: closed - Opened by sb10 over 4 years ago - 1 comment
Labels: enhancement

#306 - wr remove: option to only work on buried jobs

Issue - State: closed - Opened by sb10 over 4 years ago - 1 comment
Labels: enhancement

#304 - wr status: have a mode to search for all jobs that ran on a given machine

Issue - State: closed - Opened by sb10 over 4 years ago - 1 comment
Labels: enhancement

GitHub / VertebrateResequencing/wr issues and pull requests