USGS-R/drb-do-ml issues and pull requests

#225 - readiness review USGS

Pull Request - State: closed - Opened by jsadler2 over 1 year ago

#224 - 184 python plotting scripts

Pull Request - State: closed - Opened by jsadler2 over 1 year ago

#223 - [#217] formaling mean catch attr results

Pull Request - State: closed - Opened by jsadler2 over 1 year ago

#222 - re-add combined month reach metrics

Pull Request - State: closed - Opened by jsadler2 over 1 year ago

#221 - add snakefile_prepped

Pull Request - State: closed - Opened by jsadler2 over 1 year ago

#220 - Edit site map

Pull Request - State: closed - Opened by lekoenig over 1 year ago - 8 comments

#219 - match names in repo with manuscript names

Issue - State: open - Opened by jsadler2 over 1 year ago

#218 - 215 new validation

Pull Request - State: closed - Opened by jsadler2 over 1 year ago

#217 - what happens when catchment attributes are set to the mean?

Issue - State: closed - Opened by jsadler2 over 1 year ago - 2 comments

#216 - Try different lambdas with later dates

Issue - State: open - Opened by jsadler2 almost 2 years ago - 1 comment

#215 - New validation scheme

Issue - State: closed - Opened by jsadler2 almost 2 years ago

#214 - Try training on just later years

Issue - State: open - Opened by jsadler2 almost 2 years ago - 1 comment

#213 - Prepare for Upcoming DGEC Transition

Pull Request - State: closed - Opened by jesse-ross almost 2 years ago - 1 comment

#212 - try increasing lambda values for metabolism

Issue - State: open - Opened by jsadler2 almost 2 years ago - 1 comment

#211 - Add new test site

Pull Request - State: closed - Opened by lekoenig almost 2 years ago - 1 comment

#210 - add one of the testing sites into the training

Issue - State: open - Opened by jsadler2 almost 2 years ago

#209 - Add labels to study area figure

Issue - State: closed - Opened by lekoenig almost 2 years ago - 1 comment
Labels: viz

#208 - 198 add val data to training revised

Pull Request - State: closed - Opened by jsadler2 almost 2 years ago

#207 - Omit WQP targets

Pull Request - State: closed - Opened by lekoenig almost 2 years ago

#206 - Filter out provisional data

Pull Request - State: closed - Opened by lekoenig almost 2 years ago

#205 - Omit WQP targets

Issue - State: closed - Opened by lekoenig almost 2 years ago - 1 comment

#204 - Training start date on calendar year

Issue - State: closed - Opened by jsadler2 almost 2 years ago - 2 comments

#203 - Little random edits

Pull Request - State: closed - Opened by jsadler2 almost 2 years ago - 1 comment

#202 - 198 add val data to training

Pull Request - State: closed - Opened by jsadler2 almost 2 years ago - 2 comments

#201 - [#197] update FP with TE0 calcs

Pull Request - State: closed - Opened by jsadler2 about 2 years ago - 2 comments

#200 - Time series benchmark model

Issue - State: open - Opened by amcarter about 2 years ago

#199 - Benchmark AR time series model

Pull Request - State: closed - Opened by amcarter about 2 years ago

#198 - Incorporate validation data into train set, evaluate on test

Issue - State: closed - Opened by jsadler2 about 2 years ago

#197 - TE0 calculations

Issue - State: closed - Opened by jsadler2 about 2 years ago

#196 - Performance metrics by month

Pull Request - State: closed - Opened by jsadler2 about 2 years ago - 1 comment

#194 - Different lambda values

Issue - State: closed - Opened by jsadler2 about 2 years ago

#193 - Look at performance by month

Issue - State: open - Opened by jsadler2 about 2 years ago - 2 comments

#192 - add TE at zero lag functionality

Pull Request - State: closed - Opened by galengorski about 2 years ago - 3 comments

#191 - commit combined metric files

Pull Request - State: closed - Opened by jsadler2 about 2 years ago - 4 comments

#190 - trained wgts for 1, 1a models

Pull Request - State: closed - Opened by jsadler2 about 2 years ago

#189 - commit combined metric csv files

Issue - State: closed - Opened by jsadler2 about 2 years ago - 2 comments

#188 - running snakemake only based on file modified time

Issue - State: closed - Opened by jsadler2 about 2 years ago - 1 comment

#187 - train 1 and 1a models

Issue - State: closed - Opened by jsadler2 about 2 years ago

#186 - [#185] combining exp metrics into one file

Pull Request - State: closed - Opened by jsadler2 about 2 years ago

#185 - combined FP and PP files

Issue - State: closed - Opened by jsadler2 about 2 years ago - 1 comment

#184 - Python plotting scripts

Issue - State: closed - Opened by jsadler2 about 2 years ago - 3 comments

#182 - integrate functional performance

Pull Request - State: closed - Opened by jsadler2 about 2 years ago

#181 - plot model performance

Pull Request - State: open - Opened by lekoenig about 2 years ago

#180 - Add functions to plot predictive performance

Issue - State: open - Opened by lekoenig about 2 years ago

#179 - Integrate Functional Performance into pipeline

Issue - State: closed - Opened by jsadler2 about 2 years ago

#178 - push trained model weights for 0_baseline_LSTM and 2_multitask_dense …

Pull Request - State: closed - Opened by galengorski about 2 years ago - 1 comment

#177 - Input feature selection for static attributes

Pull Request - State: closed - Opened by lekoenig about 2 years ago

#176 - How many model replicates should we run?

Issue - State: closed - Opened by lekoenig about 2 years ago - 1 comment

#174 - Replace hard-coded prediction dates in Snakefile_base.smk

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 1 comment

#173 - Edit date formatting in Snakefile_base.smk

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 2 comments

#172 - Date formatting error in Snakefile_base.smk

Issue - State: closed - Opened by lekoenig over 2 years ago - 1 comment
Labels: bug

#171 - Check snakefiles for config options?

Issue - State: closed - Opened by lekoenig over 2 years ago - 1 comment

#169 - Format model inputs in p2a_model.R

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 2 comments

#168 - Plot segment/catchment attributes

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 5 comments

#167 - Change time zone used for formatting gridmet dates

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 2 comments

#166 - Decide how to handle test sites in analysis and plotting workflows

Issue - State: closed - Opened by lekoenig over 2 years ago

#165 - Add static river/catchment attribute data

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 1 comment

#164 - Finalize input feature selection

Issue - State: closed - Opened by lekoenig over 2 years ago

#163 - Build model config files within targets pipeline

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 6 comments

#162 - modify functional performance to accommodate replicates

Issue - State: closed - Opened by jsadler2 over 2 years ago - 3 comments

#161 - Download NHDPlusv2 flowlines by COMID

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 1 comment

#160 - Decide whether to define val time period in `_targets.R`

Issue - State: closed - Opened by lekoenig over 2 years ago

#159 - Clean up/finalize baseline LSTM

Issue - State: closed - Opened by lekoenig over 2 years ago
Labels: project-level task

#158 - Update container version

Issue - State: open - Opened by lekoenig over 2 years ago - 3 comments
Labels: pipeline

#157 - 5 replicates nhd

Pull Request - State: closed - Opened by jsadler2 over 2 years ago - 1 comment

#156 - add functional performance plotting scripts

Pull Request - State: closed - Opened by galengorski over 2 years ago - 4 comments

#155 - run models with tmmn and tmmx

Pull Request - State: closed - Opened by galengorski over 2 years ago - 1 comment

#154 - Omit medium-observed targets

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 3 comments

#153 - Rerun baseline LSTM with tmmn and tmmx

Issue - State: closed - Opened by lekoenig over 2 years ago

#151 - How to build/include .nc file

Issue - State: open - Opened by jsadler2 over 2 years ago
Labels: enhancement, pipeline

#150 - Download NHDPlusv2 flowlines by COMID

Issue - State: closed - Opened by lekoenig over 2 years ago

#149 - Add site map to pipeline

Pull Request - State: closed - Opened by lekoenig over 2 years ago

#148 - Should `2a_model.R` use med-obs or well-obs sites (but not both)?

Issue - State: closed - Opened by lekoenig over 2 years ago - 3 comments

#147 - How do segment/catchment characteristics compare across sites?

Issue - State: closed - Opened by lekoenig over 2 years ago
Labels: EDA

#146 - Add model instructions to README

Issue - State: open - Opened by lekoenig over 2 years ago - 1 comment
Labels: documentation

#145 - Resolve time zone warning when building p2_daily_max_light

Pull Request - State: closed - Opened by lekoenig over 2 years ago

#144 - Time zone warning when building p2_daily_max_light

Issue - State: closed - Opened by lekoenig over 2 years ago

#143 - Update p2a targets to use NHDv2

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 1 comment

#142 - Issues running pipeline with new nhd functionality

Issue - State: closed - Opened by galengorski over 2 years ago - 1 comment

#141 - Add NHDv2 gridmet targets to pipeline

Pull Request - State: closed - Opened by lekoenig over 2 years ago - 2 comments

#140 - updates to container for targets/streamMetabolizer

Pull Request - State: closed - Opened by jsadler2 over 2 years ago

#139 - Med obs model

Pull Request - State: closed - Opened by galengorski over 2 years ago - 1 comment

#138 - container difficulties with S3/streamMetabolizer

Issue - State: closed - Opened by jsadler2 over 2 years ago - 1 comment

#137 - 131a s3 gridmet small

Pull Request - State: closed - Opened by jsadler2 over 2 years ago - 1 comment

#136 - Omit zero-area flowlines before matching sites to reaches

Pull Request - State: closed - Opened by lekoenig over 2 years ago

#135 - Use provisional NWIS data?

Issue - State: closed - Opened by lekoenig over 2 years ago - 6 comments

#133 - [#131] s3 gridmet

Pull Request - State: closed - Opened by jsadler2 over 2 years ago - 1 comment

#132 - COMID 4781767 - observations, but no climate drivers

Issue - State: closed - Opened by jsadler2 over 2 years ago - 1 comment

#131 - s3 target for drb gridmet

Issue - State: closed - Opened by jsadler2 over 2 years ago - 3 comments

#127 - Omit targets that use the NHM fabric

Issue - State: closed - Opened by lekoenig over 2 years ago

#122 - Run model with medium observed sites

Issue - State: closed - Opened by galengorski over 2 years ago - 17 comments

#105 - filter `depth`, `temp.water`, and `K600`?

Issue - State: open - Opened by jsadler2 almost 3 years ago
Labels: process-guidance

#95 - Checkout output weights in metab multi-task

Issue - State: closed - Opened by jsadler2 almost 3 years ago - 1 comment

#71 - Create map of study domain

Issue - State: closed - Opened by lekoenig almost 3 years ago
Labels: viz

#62 - Move to NHD network?

Issue - State: closed - Opened by jsadler2 almost 3 years ago - 3 comments

#55 - Why is 01466500 so different?

Issue - State: open - Opened by jsadler2 almost 3 years ago - 7 comments
Labels: EDA

#51 - Gather additional static input variables for baseline LSTM v2

Issue - State: closed - Opened by lekoenig about 3 years ago

#49 - Evaluate the utility of adding more sites

Issue - State: closed - Opened by lekoenig about 3 years ago - 3 comments

#48 - Check correlation between temperature and DO predictions

Issue - State: closed - Opened by jsadler2 about 3 years ago - 4 comments
Labels: process-guidance

#45 - Inspect hidden states for process understanding

Issue - State: open - Opened by jsadler2 about 3 years ago - 8 comments
Labels: experiment, process-guidance

GitHub / USGS-R/drb-do-ml issues and pull requests