Ecosyste.ms: Issues

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GitHub / USEPA/CompTox-ToxCast-tcplFit2 issues and pull requests

#112 - Fix github io pages

Issue - State: open - Opened by madison-feshuk about 1 month ago

#111 - v0.1.7 CRAN update to main branch

Pull Request - State: closed - Opened by madison-feshuk about 2 months ago

#110 - 109 release tcplfit2 017

Pull Request - State: closed - Opened by brown-jason 2 months ago

#109 - Release tcplfit2 0.1.7

Issue - State: closed - Opened by brown-jason 2 months ago

#108 - 107 vignette review updates pre cran submission

Pull Request - State: closed - Opened by sedavid01 2 months ago
Labels: documentation

#107 - Vignette Review & Updates (pre-CRAN submission)

Issue - State: closed - Opened by sedavid01 2 months ago
Labels: documentation

#106 - create tests for poly2 biphasic

Issue - State: open - Opened by brown-jason 2 months ago

#105 - concRespPlot xlim

Issue - State: open - Opened by Kelly-Carstens-EPA 3 months ago

#104 - CRAN changes

Issue - State: open - Opened by brown-jason 3 months ago

#103 - update tcplhit2_core docs

Issue - State: open - Opened by brown-jason 3 months ago - 1 comment

#102 - 97 incorporate tech review comments for 017 release

Pull Request - State: closed - Opened by brown-jason 3 months ago

#101 - get_AUC comments

Issue - State: open - Opened by brown-jason 3 months ago

#100 - Improve the do.plot function in concRespCore

Issue - State: open - Opened by brown-jason 3 months ago

#99 - 98 cran checks

Pull Request - State: closed - Opened by brown-jason 3 months ago

#98 - CRAN checks

Issue - State: closed - Opened by brown-jason 4 months ago

#97 - Incorporate tech review comments for 0.1.7 release

Issue - State: closed - Opened by madison-feshuk 4 months ago - 3 comments

#96 - 94 1 size reduction

Pull Request - State: closed - Opened by madison-feshuk 4 months ago

#95 - Update rmd formatting for tcplfit2 release

Pull Request - State: closed - Opened by madison-feshuk 4 months ago

#94 - Update format of all tcplfit2 vignettes

Issue - State: closed - Opened by madison-feshuk 4 months ago
Labels: enhancement

#93 - Poly2 top reporting

Issue - State: open - Opened by kpaulfriedman 8 months ago - 2 comments
Labels: question

#92 - Add CRAN status and monthly downloads badges

Issue - State: closed - Opened by madison-feshuk 5 months ago

#91 - Reevaluate hitcontinner proportional weights

Issue - State: open - Opened by madison-feshuk 5 months ago

#90 - toplikelihood reparameterization for biphasic poly2

Issue - State: open - Opened by madison-feshuk 6 months ago
Labels: bug

#89 - 88 flipped hitc

Pull Request - State: closed - Opened by brown-jason 6 months ago - 1 comment

#87 - 86 vignette update for version release v 017 of tcplfit2

Pull Request - State: closed - Opened by gracezhihuizhao 7 months ago - 2 comments

#86 - Vignette Update for Version Release v 0.1.7 of tcplfit2

Issue - State: open - Opened by sedavid01 8 months ago - 1 comment
Labels: documentation

#85 - Update/Add unit tests Post Poly2 Update

Issue - State: open - Opened by sedavid01 9 months ago
Labels: bug, documentation, enhancement

#84 - 83 errfun should default to dt4 if not provided to tcplhit2 core

Pull Request - State: closed - Opened by gracezhihuizhao 9 months ago - 4 comments

#83 - errfun should default to dt4 if not provided to tcplhit2_core

Issue - State: closed - Opened by brown-jason 9 months ago - 1 comment
Labels: bug

#82 - 69 poly2 biphasic modeling updates testing

Pull Request - State: closed - Opened by sedavid01 9 months ago - 2 comments
Labels: enhancement

#81 - added missing comma

Pull Request - State: closed - Opened by brown-jason 9 months ago

#80 - Update in the tcplfit2 vignette mc4_mthds_id table

Issue - State: closed - Opened by sedavid01 10 months ago - 1 comment
Labels: documentation

#79 - 36 create unit tests for httr gene data fit with tcplfit2

Pull Request - State: closed - Opened by gracezhihuizhao 10 months ago

#77 - 26 update plotting functionality within tcplfit2 r package

Pull Request - State: closed - Opened by gracezhihuizhao 10 months ago - 1 comment

#75 - 62 create unit tests for htpp category data fit with tcplfit2

Pull Request - State: closed - Opened by gracezhihuizhao 11 months ago

#72 - 71 update the bmd lower boundary censoring code min conc = 0 for lower threshold

Pull Request - State: closed - Opened by gracezhihuizhao 12 months ago - 2 comments

#71 - Update the BMD Lower Boundary Censoring Code - min conc != 0 for lower threshold

Issue - State: closed - Opened by sedavid01 12 months ago - 1 comment
Labels: bug

#70 - Create unit test for checking BMD censoring CI widths stay the same

Issue - State: open - Opened by sedavid01 12 months ago - 2 comments

#69 - Poly2 Biphasic Modeling Updates & Testing

Issue - State: closed - Opened by sedavid01 12 months ago - 2 comments

#68 - 63 create unit tests for htpp global data fit with tcplfit2

Pull Request - State: closed - Opened by gracezhihuizhao 12 months ago - 4 comments

#67 - Added clarification statement to concRespCore

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago

#66 - Add clarification statement to concRespCore

Issue - State: closed - Opened by sedavid01 about 1 year ago - 1 comment
Labels: documentation

#65 - 25 add captions to the tcplfit2 vignette figures

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#63 - Create unit tests for HTPP global data fit with tcplfit2

Issue - State: open - Opened by sedavid01 about 1 year ago - 3 comments
Labels: enhancement

#62 - Create unit tests for HTPP category data fit with tcplfit2

Issue - State: open - Opened by sedavid01 about 1 year ago - 1 comment
Labels: enhancement

#61 - rebase dev branch

Issue - State: closed - Opened by brown-jason about 1 year ago

#60 - AUC estimation streamline conc scale for estimation - add argument

Issue - State: open - Opened by sedavid01 about 1 year ago
Labels: documentation, enhancement

#59 - set number of threads for data.table to pass cran checks

Pull Request - State: closed - Opened by brown-jason about 1 year ago

#58 - tcplfit2 fails cran prechecks

Issue - State: closed - Opened by brown-jason about 1 year ago - 1 comment

#57 - 56 cran v016

Pull Request - State: closed - Opened by brown-jason about 1 year ago

#56 - CRAN V0.1.6

Issue - State: closed - Opened by brown-jason about 1 year ago

#55 - Compare results of the 'get_AUC' function with previous function from Kelly (invitrodb_v3_5 data)

Issue - State: open - Opened by sedavid01 about 1 year ago - 2 comments
Labels: bug, question

#54 - 50 unit test for bmd boundary cases

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#53 - May also want session information for the compiled vignette

Issue - State: open - Opened by sedavid01 about 1 year ago
Labels: question

#52 - 49 bmd boundary check for bmd censoring arguments update documentation

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#51 - 30 polish documentation for auc functions and vignette

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#50 - Unit test for BMD boundary cases

Issue - State: open - Opened by sedavid01 about 1 year ago

#49 - BMD boundary check for BMD censoring arguments & update documentation

Issue - State: closed - Opened by sedavid01 about 1 year ago - 2 comments
Labels: enhancement

#48 - 46 add to the tcplfit2 vignette how you can censor the bmd

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#47 - 44 add the rmd for conducting unit tests and polishing for future developers

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 2 comments

#46 - Add to the tcplfit2 vignette how you can "censor" the BMD

Issue - State: closed - Opened by sedavid01 about 1 year ago - 2 comments
Labels: documentation

#45 - 16 add further descriptions about model parameters in documentation

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 2 comments

#44 - Add the Rmd for Conducting unit tests & polishing for future developers

Issue - State: closed - Opened by sedavid01 about 1 year ago - 2 comments
Labels: documentation

#43 - Addition of the lowest effect concentration model

Issue - State: open - Opened by sedavid01 about 1 year ago - 1 comment
Labels: enhancement

#42 - 34 update continuous hitcalling for error distribution choice

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#41 - 33 error model choice argument for dose response model fitting

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#39 - 17 create initial unit test for tcplfit2

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 6 comments

#38 - Create unit tests for HTPP feature data fit with tcplfit2

Issue - State: open - Opened by sedavid01 about 1 year ago - 1 comment

#37 - Create unit tests for HTTR signature data fit with tcplfit2

Issue - State: open - Opened by sedavid01 about 1 year ago - 1 comment

#36 - Create unit tests for HTTR gene data fit with tcplfit2

Issue - State: open - Opened by sedavid01 about 1 year ago - 1 comment

#35 - 22 create an auc wrapper function for after hit calling

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 1 comment

#34 - Update Continuous Hitcalling for Error Distribution Choice

Issue - State: closed - Opened by sedavid01 about 1 year ago - 1 comment
Labels: enhancement

#33 - Error Model Choice Argument for Dose-response Model Fitting

Issue - State: closed - Opened by sedavid01 about 1 year ago - 2 comments
Labels: enhancement

#32 - Curves below x-axis add argument for change to positive AUC

Issue - State: closed - Opened by sedavid01 about 1 year ago - 1 comment

#30 - Polish Documentation for AUC functions and vignette

Issue - State: closed - Opened by sedavid01 about 1 year ago - 5 comments
Labels: documentation

#28 - added Grace's name to the list of contributors

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago

#27 - 6 update readme on cran

Pull Request - State: closed - Opened by gracezhihuizhao about 1 year ago - 4 comments

#26 - Update plotting functionality within tcplfit2 R Package

Issue - State: closed - Opened by sedavid01 about 1 year ago - 7 comments
Labels: enhancement

#25 - Add Captions to the tcplfit2-vignette figures

Issue - State: closed - Opened by sedavid01 about 1 year ago - 2 comments
Labels: documentation

#24 - 23 address technical review feedback part 2

Pull Request - State: closed - Opened by brown-jason about 1 year ago - 4 comments

#23 - Address technical review feedback part 2

Issue - State: closed - Opened by brown-jason about 1 year ago - 2 comments

#22 - Create an AUC wrapper function for after hit-calling

Issue - State: closed - Opened by sedavid01 about 1 year ago - 5 comments
Labels: enhancement

#21 - 20 update the tcplfit2 vignette to address tech review comments

Pull Request - State: closed - Opened by brown-jason about 1 year ago - 1 comment

#20 - Update the tcplfit2 vignette to address tech review comments

Issue - State: closed - Opened by sedavid01 about 1 year ago - 6 comments
Labels: documentation

#19 - 12 add in a function for calculating auc for dose response curves

Pull Request - State: closed - Opened by gracezhihuizhao over 1 year ago - 3 comments

#18 - Added clarifications to ps definition in loggnls and loghill

Pull Request - State: closed - Opened by gracezhihuizhao over 1 year ago - 1 comment

#17 - Create initial unit test for tcplfit2

Issue - State: closed - Opened by brown-jason over 1 year ago - 3 comments

#16 - Add further descriptions about model parameters in documentation

Issue - State: closed - Opened by sedavid01 over 1 year ago - 4 comments
Labels: documentation

#15 - Add clarification to loghill and loggnls function documentation

Issue - State: closed - Opened by sedavid01 over 1 year ago - 1 comment
Labels: documentation

#14 - Updated function equations to LaTeX format

Pull Request - State: closed - Opened by gracezhihuizhao over 1 year ago - 3 comments

#13 - Addition of dichotomous models for binary/proportional response data

Issue - State: open - Opened by sedavid01 over 1 year ago - 3 comments
Labels: enhancement