Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / USEPA/CompTox-ToxCast-tcpl issues and pull requests

#180 - mc0 returning an error with the conc==0

Issue - State: closed - Opened by brown-jason 12 months ago

#179 - switched to logc in sc1 and sc2

Pull Request - State: closed - Opened by brown-jason 12 months ago

#178 - conc to logc single conc

Issue - State: closed - Opened by brown-jason 12 months ago

#177 - 164 logc

Pull Request - State: closed - Opened by brown-jason 12 months ago - 4 comments

#176 - Functionalize tcplPlot and other large functions

Issue - State: open - Opened by cthunes 12 months ago
Labels: enhancement

#175 - Expand tcplPlot compare.val to allow aeid/chnm

Issue - State: open - Opened by cthunes 12 months ago
Labels: enhancement

#174 - Merge compare feature into main plotting branch

Pull Request - State: closed - Opened by cthunes 12 months ago
Labels: enhancement

#173 - tcplloaddata is not backwards compatible for v4.1

Issue - State: closed - Opened by brown-jason 12 months ago - 1 comment
Labels: bug

#171 - 165 fix for = error on build

Pull Request - State: closed - Opened by cthunes almost 1 year ago
Labels: bug

#170 - update bmd bounds

Pull Request - State: closed - Opened by brown-jason about 1 year ago

#169 - 144 update tcpl so bmd low bnd = 1 and bmd up bnd = 10

Pull Request - State: closed - Opened by brown-jason about 1 year ago

#168 - 92 update tcpl plot sc plotting

Pull Request - State: closed - Opened by cthunes about 1 year ago

#167 - 165 update the model types in ow mc5 methods for plotting

Pull Request - State: closed - Opened by cthunes about 1 year ago
Labels: enhancement

#165 - Update model_types for ow_bidirectional methods and plotted coffs

Issue - State: closed - Opened by madison-feshuk about 1 year ago - 5 comments

#164 - Add correction step for zero/null concs in mc3.R

Issue - State: closed - Opened by madison-feshuk about 1 year ago - 5 comments
Labels: bug

#163 - Create single direction SC methods

Issue - State: closed - Opened by brown-jason about 1 year ago
Labels: enhancement

#162 - Update tcplLoadData to support chem queries

Issue - State: open - Opened by madison-feshuk about 1 year ago
Labels: enhancement

#161 - Investigate combined sc-mc output

Issue - State: closed - Opened by kpaulfriedman about 1 year ago
Labels: enhancement

#160 - 148 add y axis scaling

Pull Request - State: closed - Opened by cthunes about 1 year ago

#159 - 149 removed lvl parameter from tcplPlot, assigned by type now

Pull Request - State: closed - Opened by cthunes about 1 year ago

#158 - 60 remove subset by wllt in mc4.R

Pull Request - State: closed - Opened by cthunes about 1 year ago
Labels: invalid

#157 - 147 cleaned up mc6 flag descriptions

Pull Request - State: closed - Opened by cthunes about 1 year ago

#156 - 151 cran 310 release (#152)

Pull Request - State: closed - Opened by brown-jason about 1 year ago

#155 - rebase dev branch

Issue - State: closed - Opened by brown-jason about 1 year ago

#153 - 142 added level 6 flags to tcplPlot output by boolean flag

Pull Request - State: closed - Opened by cthunes about 1 year ago

#152 - 151 cran 310 release

Pull Request - State: closed - Opened by brown-jason about 1 year ago

#151 - CRAN 3.1.0 Release

Issue - State: closed - Opened by brown-jason about 1 year ago

#150 - Reformat tcplPlot for publication quality

Issue - State: open - Opened by madison-feshuk about 1 year ago - 1 comment
Labels: enhancement

#149 - Remove "lvl" parameter from tcplPlot

Issue - State: closed - Opened by madison-feshuk about 1 year ago
Labels: invalid

#148 - Add ability to set consistent y axis scaling

Issue - State: closed - Opened by madison-feshuk about 1 year ago
Labels: enhancement

#147 - Clean up "flag" descriptions in mc6.R

Issue - State: closed - Opened by madison-feshuk about 1 year ago
Labels: bug, enhancement, invalid

#146 - Update tcpl plot - 7 tickets

Pull Request - State: closed - Opened by cthunes about 1 year ago - 8 comments
Labels: enhancement

#145 - ERF TO3 ER and AR assays

Issue - State: open - Opened by kpaulfriedman about 1 year ago

#144 - update tcpl so bmd_low_bnd = .1 and bmd_up_bnd = 10

Issue - State: closed - Opened by brown-jason about 1 year ago - 1 comment

#143 - 5 add padilla phase iii sc2 mthds and fix spid character string call

Pull Request - State: closed - Opened by madison-feshuk about 1 year ago
Labels: bug, enhancement

#142 - Update tcplPlot to include Level 6 flags

Issue - State: closed - Opened by madison-feshuk about 1 year ago
Labels: enhancement

#141 - 77 null chid tcpl cyto pt output fix

Pull Request - State: closed - Opened by cthunes about 1 year ago
Labels: bug

#140 - 113 added dependency for ungroup

Pull Request - State: closed - Opened by cthunes about 1 year ago - 1 comment
Labels: bug

#139 - 128 changed export_ready parameter default to FALSE

Pull Request - State: closed - Opened by cthunes about 1 year ago - 1 comment

#138 - modified old method to allow only specific models

Pull Request - State: closed - Opened by brown-jason about 1 year ago - 3 comments

#137 - mc4_method bounded models only

Issue - State: closed - Opened by brown-jason about 1 year ago
Labels: enhancement

#136 - add coff pc16 for padilla processing

Pull Request - State: closed - Opened by madison-feshuk about 1 year ago

#135 - 62 bidirectional summary stats

Pull Request - State: closed - Opened by cthunes over 1 year ago

#134 - refactored cndx and repi code

Pull Request - State: closed - Opened by brown-jason over 1 year ago

#132 - add example image of flags to processing vignette

Issue - State: open - Opened by brown-jason over 1 year ago - 1 comment
Labels: documentation

#131 - Minor updates to documentation based on FY23 subproduct comments

Issue - State: closed - Opened by brown-jason over 1 year ago - 4 comments
Labels: documentation

#130 - 125 mc2 aggpercentrepspidmin1

Pull Request - State: closed - Opened by madison-feshuk over 1 year ago - 4 comments
Labels: enhancement, documentation

#129 - 127 nmed gtbl mc6 flags

Pull Request - State: closed - Opened by cthunes over 1 year ago

#128 - tcplSubsetChid export_ready bug

Issue - State: closed - Opened by madison-feshuk over 1 year ago - 2 comments
Labels: bug

#126 - 62 bidirectional summary stats

Pull Request - State: closed - Opened by cthunes over 1 year ago - 3 comments
Labels: enhancement, invalid

#125 - Update mc2 agg method agg.percent.rep.spid.min1 to only select one value

Issue - State: closed - Opened by madison-feshuk over 1 year ago - 1 comment
Labels: bug

#124 - modified_by field is blank in mc4

Issue - State: closed - Opened by brown-jason over 1 year ago
Labels: bug

#123 - 85 add bidirectional mc5 methods

Pull Request - State: closed - Opened by cthunes over 1 year ago - 2 comments
Labels: enhancement

#122 - Redesign mc1 concentration indices (cndx)

Issue - State: closed - Opened by madison-feshuk over 1 year ago - 9 comments
Labels: bug

#121 - determine LOE for tcplPlot() with standalone tcplfit2 output

Issue - State: closed - Opened by kpaulfriedman over 1 year ago
Labels: enhancement

#120 - 119 update mc2 agg t wells

Pull Request - State: closed - Opened by madison-feshuk over 1 year ago

#119 - Update mc2 agg methods to subset to only t wells

Issue - State: closed - Opened by madison-feshuk over 1 year ago
Labels: bug

#118 - 112 create subsections and reorder mc5 mthdsr

Pull Request - State: closed - Opened by Ashley-Ko over 1 year ago

#117 - Investigate technical limit tcplPlot parameters nrow and ncol

Issue - State: open - Opened by Ashley-Ko over 1 year ago
Labels: bug

#116 - test

Pull Request - State: closed - Opened by Ashley-Ko over 1 year ago

#115 - 106 Created mc4 bmad5.onesd16.static method

Pull Request - State: closed - Opened by cthunes over 1 year ago
Labels: enhancement

#114 - 93 create vignette for tcplplot

Pull Request - State: closed - Opened by Ashley-Ko over 1 year ago

#113 - Add dependency for dplyr in mc4 function

Issue - State: closed - Opened by cthunes over 1 year ago - 1 comment
Labels: bug

#112 - Create subsections and reorder mc5_mthds.R

Issue - State: closed - Opened by madison-feshuk over 1 year ago
Labels: documentation

#111 - Add tcplMthdAssign check for mc5 redundant coff methods

Issue - State: open - Opened by madison-feshuk over 1 year ago
Labels: enhancement

#110 - 42 add option for export ready status in tcplsubsetchid

Pull Request - State: closed - Opened by brown-jason over 1 year ago

#108 - 99 mc2 agg methods

Pull Request - State: closed - Opened by madison-feshuk over 1 year ago - 2 comments

#107 - Rebase main into issue branch for removing fval columns

Pull Request - State: closed - Opened by cthunes over 1 year ago

#106 - Add mc4 default baseline variability method

Issue - State: closed - Opened by madison-feshuk over 1 year ago - 1 comment
Labels: enhancement

#105 - 98 duplicate acsn bug resolved

Pull Request - State: closed - Opened by cthunes over 1 year ago

#104 - Investigate Table of Contents options for vignettes

Issue - State: closed - Opened by madison-feshuk over 1 year ago - 1 comment
Labels: enhancement

#103 - Updated *_mthds.R and invitrodb to reflect new method desc

Pull Request - State: closed - Opened by Ashley-Ko over 1 year ago

#102 - 95 update mc6_mthds with fval and fval_unit drops

Pull Request - State: closed - Opened by cthunes over 1 year ago - 1 comment

#101 - 94 fixed bug with tcplLoadData(lvl=4, addfld=FALSE)

Pull Request - State: closed - Opened by cthunes over 1 year ago
Labels: bug

#100 - Remove duplicate columns present in mc5 output

Issue - State: open - Opened by madison-feshuk over 1 year ago
Labels: bug

#99 - Add mc2 aggregation methods for biological replicates

Issue - State: closed - Opened by madison-feshuk over 1 year ago
Labels: enhancement

#98 - Avoid writing duplicate acsns when they are already in the database

Issue - State: closed - Opened by cthunes over 1 year ago
Labels: bug

#97 - 80 add level 6 flags section to data processing vignette

Pull Request - State: closed - Opened by Ashley-Ko over 1 year ago

#96 - 80-add-level-6-flags-section-to-data-processing-vignette

Pull Request - State: closed - Opened by Ashley-Ko over 1 year ago

#95 - Remove mc6 fval and fval_unit columns

Issue - State: closed - Opened by madison-feshuk over 1 year ago
Labels: bug

#94 - tcplPrepOtpt bug when add.fld=FALSE with zero rows

Issue - State: closed - Opened by madison-feshuk over 1 year ago
Labels: bug

#93 - Create vignette for tcplPlot

Issue - State: closed - Opened by brown-jason over 1 year ago - 2 comments
Labels: enhancement

#92 - Update tcplPlot for sc data plotting

Issue - State: closed - Opened by madison-feshuk over 1 year ago

#91 - moved legacy fit_all parameter into the legacy mc4 fitting

Pull Request - State: closed - Opened by brown-jason over 1 year ago - 1 comment

#90 - fit all has been removed but mc4 still requests this information

Issue - State: closed - Opened by brown-jason over 1 year ago
Labels: bug

#89 - replaced long while loop

Pull Request - State: closed - Opened by brown-jason over 1 year ago

#88 - Replace while loop in mc1 code

Issue - State: closed - Opened by brown-jason over 1 year ago

#87 - 59 Created new flag to encompass fit_all logic

Pull Request - State: closed - Opened by cthunes over 1 year ago
Labels: enhancement

#85 - Add ow_bidirectional_loss and ow_bidirectional_gain mc5 methods

Issue - State: closed - Opened by madison-feshuk over 1 year ago
Labels: enhancement

#84 - 52 fix tcplPrepOtpt bug with 0 rows input

Pull Request - State: closed - Opened by cthunes over 1 year ago - 1 comment
Labels: bug

#83 - 68 fixed v2 vignette bug

Pull Request - State: closed - Opened by cthunes over 1 year ago
Labels: bug

#82 - tcplVarMat() updates - multiple

Issue - State: closed - Opened by kpaulfriedman over 1 year ago - 1 comment
Labels: enhancement

#81 - #66 Added mc5 fit categories diagram & text to processing vignette

Pull Request - State: closed - Opened by Ashley-Ko over 1 year ago

#80 - Add Level 6 flags section to data processing vignette

Issue - State: closed - Opened by madison-feshuk over 1 year ago
Labels: enhancement