Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / USEPA/CompTox-ToxCast-tcpl issues and pull requests

#283 - 259 remove tcpl lite and add api throughout package

Pull Request - State: open - Opened by cthunes 3 months ago

#281 - 210-size-clean-up

Pull Request - State: closed - Opened by madison-feshuk 4 months ago - 1 comment

#279 - 278 require nhit = 2 for tcplcytopt calculations

Pull Request - State: closed - Opened by brown-jason 4 months ago

#278 - Require nhit >= 2 for tcplCytoPt calculations

Issue - State: closed - Opened by madison-feshuk 4 months ago - 1 comment
Labels: bug

#277 - 276 added mc7 to tcplLoadData, only for MySQL connections

Pull Request - State: closed - Opened by cthunes 4 months ago
Labels: enhancement

#276 - Add mc7 to tcplLoadData

Issue - State: closed - Opened by madison-feshuk 4 months ago
Labels: enhancement

#275 - 215 updated tcplPlot to return ggplot object if only 1 plot

Pull Request - State: open - Opened by cthunes 4 months ago
Labels: enhancement

#274 - 267 created separate tcplPlotLoadData function to export and refactored related code

Pull Request - State: closed - Opened by cthunes 4 months ago
Labels: enhancement, documentation

#273 - 268 update references to ccdR to use ctxR instead

Pull Request - State: closed - Opened by cthunes 4 months ago
Labels: invalid

#272 - create mc5_model_type table in invitrodb

Issue - State: closed - Opened by cthunes 4 months ago - 1 comment

#271 - First pass vignette updates for v3.2 release

Pull Request - State: closed - Opened by cthunes 4 months ago
Labels: documentation

#270 - changed load clib to chemlist

Pull Request - State: closed - Opened by brown-jason 5 months ago

#269 - removed gnls filter

Pull Request - State: closed - Opened by brown-jason 5 months ago

#268 - Update ccdR dependency to ctxR for API connection

Issue - State: closed - Opened by madison-feshuk 5 months ago
Labels: invalid

#267 - Export tcplPlotLoadData as separate .R file

Issue - State: closed - Opened by madison-feshuk 5 months ago
Labels: documentation

#266 - Add CRAN status and monthly downloads badges

Issue - State: closed - Opened by madison-feshuk 5 months ago

#265 - 262 remove duplicate columns resolves load error

Pull Request - State: closed - Opened by cthunes 5 months ago
Labels: bug

#264 - 230 update tcpl var mat docs

Pull Request - State: closed - Opened by cthunes 6 months ago - 1 comment
Labels: documentation

#263 - Excluding export_ready 0 from tcplRun

Issue - State: open - Opened by Ashley-Ko 6 months ago
Labels: enhancement

#262 - tcplloaddata with joined tables errors on select statement

Issue - State: closed - Opened by brown-jason 6 months ago - 3 comments
Labels: bug

#261 - Added sc1 method bval.nwlls.med

Pull Request - State: closed - Opened by Kelly-Carstens-EPA 6 months ago - 1 comment

#260 - 231 add data retrieval via api vignette

Pull Request - State: closed - Opened by cthunes 6 months ago - 2 comments
Labels: enhancement, documentation

#259 - Remove tcplLite and add API throughout package

Issue - State: open - Opened by cthunes 6 months ago - 1 comment

#258 - Add sc1 method for bval by wllt

Issue - State: closed - Opened by Kelly-Carstens-EPA 6 months ago - 1 comment

#257 - 235 247 248 206 api plotting and bug fixes

Pull Request - State: closed - Opened by cthunes 6 months ago - 1 comment
Labels: bug, enhancement

#256 - Move wllt loading out of ggplot functions and into overall loading data in utils

Issue - State: open - Opened by cthunes 6 months ago
Labels: enhancement

#255 - Add progress bar to tcplPlot and tcplRun

Issue - State: open - Opened by madison-feshuk 7 months ago
Labels: enhancement

#254 - Add parameter to hide warnings in tcplRun and tcplPlot by default

Issue - State: open - Opened by madison-feshuk 7 months ago
Labels: enhancement

#253 - tcplPlotcompare: Units do not match

Issue - State: closed - Opened by brown-jason 7 months ago

#252 - Replace chid as dtxsid

Issue - State: open - Opened by madison-feshuk 7 months ago
Labels: enhancement

#251 - tcplLoadClib update to tcplLoadChemList

Issue - State: closed - Opened by madison-feshuk 7 months ago
Labels: enhancement

#248 - checking wllt to fix names in tcplPlot fails with sc

Issue - State: closed - Opened by cthunes 7 months ago
Labels: bug

#247 - tcplPlot error for obscure well types

Issue - State: closed - Opened by madison-feshuk 7 months ago
Labels: bug

#246 - 233 expand ccd r integration into tcpl load funcs

Pull Request - State: closed - Opened by cthunes 7 months ago
Labels: enhancement

#245 - 243 update blineshift and related methods

Pull Request - State: closed - Opened by cthunes 7 months ago
Labels: bug

#244 - Add warning if mixed well types present in mc0

Issue - State: open - Opened by madison-feshuk 7 months ago
Labels: enhancement

#243 - Update blineshift.R to account for bidirectionality

Issue - State: closed - Opened by madison-feshuk 7 months ago - 1 comment
Labels: enhancement

#241 - TcplPlot refactoring

Issue - State: open - Opened by brown-jason 7 months ago - 1 comment

#240 - 227 tcpl data processing vignette updates accounting for updates to tcplfit2

Pull Request - State: closed - Opened by gracezhihuizhao 7 months ago - 4 comments

#239 - 211 add fc025 mc5 cutoff method for tshr processing

Pull Request - State: closed - Opened by Ashley-Ko 7 months ago - 1 comment

#238 - Remove Data_processing-Archive_tcpl_v2 vignette

Issue - State: closed - Opened by cthunes 7 months ago - 1 comment
Labels: bug

#237 - invitrodb.mc5 column "err"

Issue - State: open - Opened by kpaulfriedman 8 months ago - 2 comments

#236 - Poly2 top reporting

Issue - State: open - Opened by kpaulfriedman 8 months ago
Labels: question

#235 - Extend tcplPlot to plot using API data (connected via tcplConf)

Issue - State: closed - Opened by cthunes 8 months ago
Labels: enhancement

#234 - Investigate how we can expand API (ccdR) into tcplLoadChem

Issue - State: closed - Opened by cthunes 8 months ago
Labels: enhancement

#233 - Expand API (ccdR) integration to other tcplLoadXxxx functions

Issue - State: closed - Opened by cthunes 8 months ago
Labels: enhancement

#232 - Add unit tests using mocking for new tcpl-API functionality

Issue - State: closed - Opened by cthunes 8 months ago
Labels: enhancement

#231 - Add "Data Retrieval via API" vignette

Issue - State: closed - Opened by madison-feshuk 8 months ago
Labels: documentation

#230 - Update tcplVarMat documentation with export instructions

Issue - State: closed - Opened by madison-feshuk 8 months ago
Labels: documentation

#229 - 226/172 tcpl plot fails when winning model is none/unregistered chemicals do not show NA

Pull Request - State: closed - Opened by cthunes 8 months ago
Labels: bug, enhancement

#228 - Create function to load wllt from m3id, spid/acid, spid/aeid

Issue - State: open - Opened by cthunes 8 months ago
Labels: enhancement

#227 - tcpl Data Processing Vignette Updates Accounting for Updates to tcplfit2

Issue - State: closed - Opened by sedavid01 8 months ago - 1 comment
Labels: documentation

#226 - tcplPlot fails when there is no winning model for any given sample

Issue - State: closed - Opened by cthunes 8 months ago
Labels: bug

#225 - 216 backwards compatibility checks fixes

Pull Request - State: closed - Opened by cthunes 8 months ago
Labels: bug

#223 - Suppress or solve warnings for when processing levels 4 + 5

Issue - State: open - Opened by cthunes 8 months ago - 1 comment

#221 - 202 integrate ccdR into tcpl load data

Pull Request - State: closed - Opened by cthunes 8 months ago - 2 comments
Labels: enhancement

#220 - Update mc6_methods.R to account for model_type

Issue - State: closed - Opened by madison-feshuk 8 months ago
Labels: bug

#219 - remove all references to rmysql from vignette

Issue - State: closed - Opened by brown-jason 8 months ago
Labels: documentation

#218 - Update default tcpl config file to use API

Issue - State: closed - Opened by madison-feshuk 8 months ago
Labels: enhancement

#217 - Update check_tcpl_db_schema() for backwards compatibility

Issue - State: open - Opened by madison-feshuk 8 months ago - 1 comment
Labels: enhancement

#216 - Add check_tcpl_db_schema() to deprecated functions

Issue - State: closed - Opened by madison-feshuk 8 months ago - 1 comment
Labels: bug

#215 - How to produce dose-response curves using db 4.1?

Issue - State: open - Opened by ldecicco-USGS 8 months ago - 11 comments

#214 - check for rmysql and unload if in namespace

Pull Request - State: closed - Opened by brown-jason 9 months ago - 1 comment

#213 - unload rmysql if it's in namespace

Issue - State: closed - Opened by brown-jason 9 months ago
Labels: bug

#212 - tcplvarmat for invitrodb v4_1

Issue - State: closed - Opened by brown-jason 9 months ago - 1 comment
Labels: bug

#211 - Add fc0.25 mc5 cutoff method for TSHR processing

Issue - State: closed - Opened by madison-feshuk 9 months ago - 1 comment
Labels: enhancement

#210 - Vignette updates needed for CRAN v3.2 release

Issue - State: closed - Opened by madison-feshuk 9 months ago - 2 comments
Labels: documentation

#209 - 207 solve mutate error, added errfun to params

Pull Request - State: closed - Opened by cthunes 9 months ago - 2 comments
Labels: bug

#208 - Help with model images for Cheminformatics Modules

Issue - State: closed - Opened by kpaulfriedman 9 months ago - 3 comments

#207 - Investigate level 5 mutate() processing error

Issue - State: closed - Opened by madison-feshuk 9 months ago
Labels: bug

#206 - tcplPlot single conc inconsistent cutoff directions between ggplot and plotly variations

Issue - State: closed - Opened by cthunes 9 months ago - 1 comment
Labels: bug

#205 - 204 fixed tcplLoadData space bug and tcplPlot order bug

Pull Request - State: closed - Opened by cthunes 9 months ago
Labels: bug

#204 - Plotting error in single conc related to tcplLoadData update

Issue - State: closed - Opened by cthunes 9 months ago
Labels: bug

#202 - Integrate ccdR into tcplloaddata

Issue - State: closed - Opened by brown-jason 9 months ago
Labels: enhancement

#201 - Add ToxRefDB-AED comparison section to data retrieval vignette

Pull Request - State: closed - Opened by madison-feshuk 10 months ago
Labels: enhancement

#200 - tcplPlot(): scientific notation and winning model order

Issue - State: open - Opened by Kelly-Carstens-EPA 10 months ago - 1 comment
Labels: enhancement

#199 - 196 overwrite osd during hitcalling

Pull Request - State: closed - Opened by brown-jason 10 months ago - 2 comments

#198 - Update github actions to include dev branch for tests

Issue - State: closed - Opened by brown-jason 10 months ago

#196 - overwrite osd during hitcalling

Issue - State: closed - Opened by brown-jason 11 months ago

#195 - 163 create single direction sc methods

Pull Request - State: closed - Opened by cthunes 11 months ago - 1 comment
Labels: enhancement

#194 - folded osd calculation into bmad methods

Pull Request - State: closed - Opened by brown-jason 11 months ago - 1 comment

#191 - 173 overhaul tcpl load data for backwards compatibility

Pull Request - State: closed - Opened by cthunes 11 months ago - 1 comment
Labels: bug

#190 - lvl3 mthds: resp.pc + pvalzero

Issue - State: open - Opened by Kelly-Carstens-EPA 11 months ago

#189 - tcplSubsetChid overwrites hitc to boolean

Issue - State: open - Opened by cthunes 11 months ago - 3 comments
Labels: bug

#188 - 187 sc logc conc

Pull Request - State: closed - Opened by brown-jason 11 months ago

#187 - tcplRun() for SC data

Issue - State: closed - Opened by Kelly-Carstens-EPA 11 months ago

#186 - 161/82 investigate combined sc-mc output: tcplVarMat() overhaul

Pull Request - State: closed - Opened by cthunes 11 months ago - 5 comments
Labels: bug, enhancement

#185 - 121 standalone plotting

Pull Request - State: closed - Opened by brown-jason 12 months ago

#184 - Test project auto-add workflow

Issue - State: closed - Opened by brown-jason 12 months ago - 1 comment

#183 - added modified_by to the new schema lvl 4 write function

Pull Request - State: closed - Opened by brown-jason 12 months ago - 1 comment