Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / USDA-ARS-GBRU/itsxpress issues and pull requests
#51 - Plugin error from itsxpress with AVITI data (FASTQ quality value (45) above qmax (41)
Issue -
State: open - Opened by IrshadUlHaq1 28 days ago
- 1 comment
Labels: enhancement
#50 - Retain untrimmed reads
Issue -
State: open - Opened by LukeLikesDirt about 1 month ago
#49 - Update README.rst
Pull Request -
State: closed - Opened by arivers 5 months ago
#48 - Installedits
Pull Request -
State: closed - Opened by arivers 6 months ago
#47 - Update python-package-conda_TestAppleSilicon.yml
Pull Request -
State: closed - Opened by seina001 6 months ago
#46 - bioconda recipies and Apple arm64 (M1, M2,M3) hardware
Issue -
State: closed - Opened by arivers 6 months ago
- 1 comment
#45 - using ITSxpress with nanopore sequencing reads - error profile
Issue -
State: closed - Opened by Robvh-git 6 months ago
- 2 comments
#44 - Itsxpress v2 flankingregions trim gh issue
Pull Request -
State: closed - Opened by seina001 7 months ago
#43 - Conserved flanking regions are not fully trimmed from some sequences in paired-end mode
Issue -
State: closed - Opened by ewmorr 7 months ago
- 3 comments
Labels: bug
#42 - how can i update this new version to my existed env
Issue -
State: closed - Opened by 25280841 10 months ago
- 1 comment
#41 - clustering behavior of itsxpress
Issue -
State: open - Opened by Robvh-git 11 months ago
- 3 comments
#40 - Trimming primers before running ITS xpress
Issue -
State: open - Opened by dalofa 12 months ago
- 5 comments
#39 - Version2
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#38 - Version2
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#37 - Adding merge V2 test
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#36 - 1.8.1 eol
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#35 - Create python-package-conda.yml
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#34 - Create python-package-conda.yml
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#33 - Create python-package-conda.yml
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#32 - Create python-package-conda.yml
Pull Request -
State: closed - Opened by seina001 over 1 year ago
#31 - fasta file being passed to vsearch
Issue -
State: open - Opened by austenapigo almost 2 years ago
- 7 comments
Labels: question
#30 - Question about ITS extraction from metagenomes
Issue -
State: closed - Opened by andressamv almost 2 years ago
- 1 comment
#29 - q2-ITSxpress generates empty sequences?
Issue -
State: open - Opened by gabrielet almost 2 years ago
- 2 comments
#28 - Cannot properly install on qiime2
Issue -
State: closed - Opened by yoshinak1 about 2 years ago
- 2 comments
#27 - Setting versions and updating readme for EOL v1
Pull Request -
State: closed - Opened by seina001 about 2 years ago
#26 - Running ITSxpress in parallel
Issue -
State: closed - Opened by LukeLikesDirt over 2 years ago
- 1 comment
#25 - Appears to merge reads, but can't write to file.
Issue -
State: closed - Opened by bscottraven over 2 years ago
- 5 comments
#24 - ITS produces empty files after merging - No ITS start or stop sites detected
Issue -
State: closed - Opened by science-chump almost 3 years ago
- 10 comments
#23 - ITSexpress and DADA2 with novaseq
Issue -
State: closed - Opened by science-chump almost 3 years ago
- 1 comment
#22 - Q2-ITSxpress: File too small?
Issue -
State: closed - Opened by brittonstrickland about 3 years ago
- 1 comment
#21 - Fix example (case 2)
Pull Request -
State: closed - Opened by vmikk over 3 years ago
#20 - merged q2_itsxpress into itsxpress
Pull Request -
State: closed - Opened by MeghaNagarmunoli over 3 years ago
- 1 comment
#19 - ITSxpress not working with reverse complimented reads
Issue -
State: closed - Opened by DGladish over 3 years ago
- 4 comments
#18 - ITSxpress detecting 3 ITS2 loci, same file ITSx detects 200000 ITS2 loci
Issue -
State: open - Opened by andzandz11 about 4 years ago
- 7 comments
Labels: enhancement
#17 - itsxpress produces empty files after merging
Issue -
State: closed - Opened by mfbeuq about 4 years ago
- 2 comments
#16 - Conda install not compatible with QIIME2 2019.10
Issue -
State: closed - Opened by ppericard almost 5 years ago
- 6 comments
#15 - Issue11
Pull Request -
State: closed - Opened by arivers almost 5 years ago
#14 - A question
Issue -
State: closed - Opened by chaibenl about 5 years ago
- 6 comments
#13 - Write SSU/LSU regions
Issue -
State: closed - Opened by brendanf over 5 years ago
- 2 comments
Labels: enhancement, wontfix
#12 - Clearer error message when a fasta passed to vsearch is empty
Issue -
State: closed - Opened by arivers over 5 years ago
- 1 comment
Labels: enhancement
#11 - ITSx on reverse-complement
Issue -
State: closed - Opened by wzacs1 almost 6 years ago
- 7 comments
Labels: enhancement
#10 - Fixes to issue 9
Pull Request -
State: closed - Opened by arivers almost 6 years ago
#9 - BBMerge fails to merge reads
Issue -
State: closed - Opened by pilpel-lab almost 6 years ago
- 6 comments
#8 - Improper handling when no fungal sequences are found in a processed file
Issue -
State: closed - Opened by arivers almost 6 years ago
- 4 comments
Labels: bug
#7 - added handling for missing tlen values in itsPosition objects
Pull Request -
State: closed - Opened by arivers about 6 years ago
#6 - Added sphinx docs
Pull Request -
State: closed - Opened by arivers about 6 years ago
#5 - Add unmerged
Pull Request -
State: closed - Opened by arivers about 6 years ago
- 1 comment
#4 - Replacing old method for skbio.read
Pull Request -
State: closed - Opened by kweber1 about 6 years ago
- 1 comment
#3 - Update main.py
Pull Request -
State: closed - Opened by kweber1 about 6 years ago
#2 - Changed seld to self in "with open(seld.seq_file, 'r') as f:"
Pull Request -
State: closed - Opened by kweber1 over 6 years ago
- 1 comment
#1 - Add a Codacy badge to readme.rst
Pull Request -
State: closed - Opened by codacy-badger over 6 years ago
- 2 comments