Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / USDA-ARS-GBRU/itsxpress issues and pull requests

#62 - Iss60

Pull Request - State: closed - Opened by arivers about 1 month ago

#60 - q2_itsexpress Deleting tempdir at end of first sample

Issue - State: closed - Opened by hyphaltip about 1 month ago - 2 comments
Labels: bug

#59 - Update README.rst

Pull Request - State: closed - Opened by arivers about 1 month ago - 1 comment

#58 - Error in README file? Use case 2 in Examples

Issue - State: closed - Opened by cheulard 2 months ago - 1 comment

#57 - Updates to FASTQ file validation

Pull Request - State: closed - Opened by arivers 3 months ago

#56 - PacBio CCS interleave error

Issue - State: closed - Opened by Robvh-git 4 months ago - 3 comments
Labels: bug

#55 - Fixed bug in tempfile, minor updates

Pull Request - State: closed - Opened by arivers 5 months ago

#54 - tempfile flag is not working

Issue - State: closed - Opened by arivers 5 months ago - 1 comment
Labels: bug

#53 - Iss51

Pull Request - State: closed - Opened by arivers 5 months ago

#52 - PacBio ITS Extraction Issue

Issue - State: closed - Opened by Chenshize0104 5 months ago - 2 comments

#51 - Plugin error from itsxpress with AVITI data (FASTQ quality value (45) above qmax (41)

Issue - State: closed - Opened by IrshadUlHaq1 5 months ago - 2 comments
Labels: enhancement

#50 - Retain untrimmed reads

Issue - State: closed - Opened by LukeLikesDirt 6 months ago - 4 comments
Labels: enhancement, wontfix

#49 - Update README.rst

Pull Request - State: closed - Opened by arivers 10 months ago

#48 - Installedits

Pull Request - State: closed - Opened by arivers 10 months ago

#47 - Update python-package-conda_TestAppleSilicon.yml

Pull Request - State: closed - Opened by seina001 10 months ago

#46 - bioconda recipies and Apple arm64 (M1, M2,M3) hardware

Issue - State: closed - Opened by arivers 10 months ago - 1 comment

#45 - using ITSxpress with nanopore sequencing reads - error profile

Issue - State: closed - Opened by Robvh-git 11 months ago - 2 comments

#44 - Itsxpress v2 flankingregions trim gh issue

Pull Request - State: closed - Opened by seina001 11 months ago

#43 - Conserved flanking regions are not fully trimmed from some sequences in paired-end mode

Issue - State: closed - Opened by ewmorr 12 months ago - 3 comments
Labels: bug

#42 - how can i update this new version to my existed env

Issue - State: closed - Opened by 25280841 about 1 year ago - 1 comment

#41 - clustering behavior of itsxpress

Issue - State: closed - Opened by Robvh-git about 1 year ago - 3 comments

#40 - Trimming primers before running ITS xpress

Issue - State: closed - Opened by dalofa over 1 year ago - 5 comments

#39 - Version2

Pull Request - State: closed - Opened by seina001 over 1 year ago

#38 - Version2

Pull Request - State: closed - Opened by seina001 over 1 year ago

#37 - Adding merge V2 test

Pull Request - State: closed - Opened by seina001 over 1 year ago

#36 - 1.8.1 eol

Pull Request - State: closed - Opened by seina001 over 1 year ago

#35 - Create python-package-conda.yml

Pull Request - State: closed - Opened by seina001 about 2 years ago

#34 - Create python-package-conda.yml

Pull Request - State: closed - Opened by seina001 about 2 years ago

#33 - Create python-package-conda.yml

Pull Request - State: closed - Opened by seina001 about 2 years ago

#32 - Create python-package-conda.yml

Pull Request - State: closed - Opened by seina001 about 2 years ago

#31 - fasta file being passed to vsearch

Issue - State: closed - Opened by austenapigo about 2 years ago - 8 comments
Labels: question

#30 - Question about ITS extraction from metagenomes

Issue - State: closed - Opened by andressamv over 2 years ago - 1 comment

#29 - q2-ITSxpress generates empty sequences?

Issue - State: closed - Opened by gabrielet over 2 years ago - 3 comments

#28 - Cannot properly install on qiime2

Issue - State: closed - Opened by yoshinak1 over 2 years ago - 2 comments

#27 - Setting versions and updating readme for EOL v1

Pull Request - State: closed - Opened by seina001 over 2 years ago

#26 - Running ITSxpress in parallel

Issue - State: closed - Opened by LukeLikesDirt almost 3 years ago - 1 comment

#25 - Appears to merge reads, but can't write to file.

Issue - State: closed - Opened by bscottraven almost 3 years ago - 5 comments

#24 - ITS produces empty files after merging - No ITS start or stop sites detected

Issue - State: closed - Opened by science-chump about 3 years ago - 10 comments

#23 - ITSexpress and DADA2 with novaseq

Issue - State: closed - Opened by science-chump about 3 years ago - 1 comment

#22 - Q2-ITSxpress: File too small?

Issue - State: closed - Opened by brittonstrickland over 3 years ago - 1 comment

#21 - Fix example (case 2)

Pull Request - State: closed - Opened by vmikk over 3 years ago

#20 - merged q2_itsxpress into itsxpress

Pull Request - State: closed - Opened by MeghaNagarmunoli almost 4 years ago - 1 comment

#19 - ITSxpress not working with reverse complimented reads

Issue - State: closed - Opened by DGladish almost 4 years ago - 4 comments

#18 - ITSxpress detecting 3 ITS2 loci, same file ITSx detects 200000 ITS2 loci

Issue - State: closed - Opened by Andreas-Bio over 4 years ago - 8 comments
Labels: enhancement, wontfix

#17 - itsxpress produces empty files after merging

Issue - State: closed - Opened by mfbeuq over 4 years ago - 2 comments

#16 - Conda install not compatible with QIIME2 2019.10

Issue - State: closed - Opened by ppericard about 5 years ago - 6 comments

#15 - Issue11

Pull Request - State: closed - Opened by arivers about 5 years ago

#14 - A question

Issue - State: closed - Opened by chaibenl over 5 years ago - 6 comments

#13 - Write SSU/LSU regions

Issue - State: closed - Opened by brendanf over 5 years ago - 2 comments
Labels: enhancement, wontfix

#12 - Clearer error message when a fasta passed to vsearch is empty

Issue - State: closed - Opened by arivers about 6 years ago - 1 comment
Labels: enhancement

#11 - ITSx on reverse-complement

Issue - State: closed - Opened by wzacs1 about 6 years ago - 7 comments
Labels: enhancement

#10 - Fixes to issue 9

Pull Request - State: closed - Opened by arivers over 6 years ago

#9 - BBMerge fails to merge reads

Issue - State: closed - Opened by pilpel-lab over 6 years ago - 6 comments

#8 - Improper handling when no fungal sequences are found in a processed file

Issue - State: closed - Opened by arivers over 6 years ago - 4 comments
Labels: bug

#7 - added handling for missing tlen values in itsPosition objects

Pull Request - State: closed - Opened by arivers over 6 years ago

#6 - Added sphinx docs

Pull Request - State: closed - Opened by arivers over 6 years ago

#5 - Add unmerged

Pull Request - State: closed - Opened by arivers over 6 years ago - 1 comment

#4 - Replacing old method for skbio.read

Pull Request - State: closed - Opened by kweber1 over 6 years ago - 1 comment

#3 - Update main.py

Pull Request - State: closed - Opened by kweber1 over 6 years ago

#2 - Changed seld to self in "with open(seld.seq_file, 'r') as f:"

Pull Request - State: closed - Opened by kweber1 over 6 years ago - 1 comment

#1 - Add a Codacy badge to readme.rst

Pull Request - State: closed - Opened by codacy-badger over 6 years ago - 2 comments