Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / UNFmontreal/Dcm2Bids issues and pull requests

#216 - [feature request] always add `run-<>` label

Issue - State: closed - Opened by smeisler over 1 year ago - 1 comment

#215 - [BF] valid participant

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 1 comment

#214 - [ENH] dataType -> datatype and modalityLabel -> suffix

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 1 comment

#213 - Generalization of sidecarchanges using ids

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 2 comments

#212 - dcm2bids goes crazy if `--participant` contains - or _

Issue - State: closed - Opened by SamGuay over 1 year ago
Labels: bug

#211 - [ENH] - Enable to automagically fill Sources key

Pull Request - State: closed - Opened by SamGuay over 1 year ago - 2 comments

#210 - [FIX,ENH] - Improve dcm2bids_helper mod

Pull Request - State: closed - Opened by SamGuay over 1 year ago

#209 - [FIX] Broken scaffold no more

Pull Request - State: closed - Opened by SamGuay over 1 year ago - 1 comment

#208 - [ENH] Upgrade custom entities

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 5 comments

#207 - Upgrade feature Intended for

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 1 comment

#206 - Add bids-validator option

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 1 comment

#205 - Bump pymdown-extensions from 7.1 to 10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#204 - Bump gitpython from 3.1.29 to 3.1.30

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#203 - Bump requests from 2.27.1 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#202 - Bump tornado from 6.1 to 6.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#201 - Get README from bids toolkit

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 1 comment

#200 - [ENH] Refactorisation - Major API upgrade

Pull Request - State: closed - Opened by arnaudbore over 1 year ago - 1 comment

#199 - [ENH] Major refactoring - API major modifications

Pull Request - State: closed - Opened by arnaudbore over 1 year ago

#198 - Add "run" info to files even if not duplicates

Issue - State: closed - Opened by smeisler over 1 year ago - 1 comment

#197 - pydra-dcm2bids: Pydra tasks for dcm2bids

Issue - State: closed - Opened by ghisvail over 1 year ago - 5 comments

#196 - Intended For in json files (What's the meaning of 0/1/2)

Issue - State: closed - Opened by colIapse over 1 year ago - 1 comment

#195 - Move tmp directory

Pull Request - State: closed - Opened by smeisler over 1 year ago

#194 - Bump ipython from 8.2.0 to 8.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#193 - intendedFor field of fmap .json file use \\ separator instead of /

Issue - State: closed - Opened by guochun-yang over 1 year ago - 1 comment

#192 - WIP: Add Argument for Configuring dcm2niix Search Depth

Pull Request - State: closed - Opened by wasciutto over 1 year ago

#191 - Need Ability to Configure dcm2niix Search Depth

Issue - State: closed - Opened by wasciutto over 1 year ago - 4 comments

#189 - citation text

Issue - State: closed - Opened by Arshitha over 1 year ago - 3 comments

#188 - Deface not working

Issue - State: closed - Opened by adamnarai almost 2 years ago - 1 comment

#187 - Bump certifi from 2021.10.8 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] almost 2 years ago - 2 comments
Labels: dependencies

#186 - dcm2bids very slow on HPC

Issue - State: closed - Opened by hellenmir almost 2 years ago - 2 comments

#185 - update version to match release

Pull Request - State: closed - Opened by SamGuay about 2 years ago

#184 - dcm2bids not updating to 2.1.9 (conda environment)

Issue - State: closed - Opened by Catyre about 2 years ago - 3 comments

#183 - [DOC] fix typo and add detail about entity reordering

Pull Request - State: closed - Opened by Remi-Gau about 2 years ago

#182 - Bump mako from 1.2.0 to 1.2.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies

#181 - [DOC] small fixes in tutorial

Pull Request - State: closed - Opened by azabicki about 2 years ago - 1 comment

#180 - IntendedFor still shows ".gz" when dcm2niix outputs uncompressed files

Issue - State: closed - Opened by azabicki about 2 years ago - 1 comment

#177 - dots in nifti file names not correctly parsed

Issue - State: closed - Opened by fedgiove about 2 years ago - 1 comment

#176 - default readme in BIDS dataset after conversion

Issue - State: closed - Opened by Remi-Gau about 2 years ago - 2 comments

#174 - 'Dicom Images Not Found" Error

Issue - State: closed - Opened by mmo8 about 2 years ago - 1 comment

#173 - adding varying series descriptions for the same series as a list in config.json

Issue - State: closed - Opened by Arshitha over 2 years ago - 4 comments

#172 - BF - forgot bval bvec

Pull Request - State: closed - Opened by arnaudbore over 2 years ago

#171 - Support output_dir override #170

Pull Request - State: closed - Opened by GMerakis over 2 years ago - 1 comment

#170 - scaffold does not support over ride

Issue - State: closed - Opened by GMerakis over 2 years ago - 2 comments

#169 - Fix if dot in dcm files names

Pull Request - State: closed - Opened by arnaudbore over 2 years ago

#168 - update_to_2.1.7

Pull Request - State: closed - Opened by arnaudbore over 2 years ago

#167 - fix re option

Pull Request - State: closed - Opened by arnaudbore over 2 years ago

#166 - [FIX] freeze doc packages

Pull Request - State: closed - Opened by SamGuay over 2 years ago - 1 comment

#165 - [DOC][ENH] - Add instructions with Anaconda Navigator + Warning about spaces in paths

Pull Request - State: closed - Opened by SamGuay over 2 years ago - 1 comment

#164 - [ENH] Major refactoring - change completely the API

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 1 comment

#163 - Fix windows paths patch

Pull Request - State: closed - Opened by SamGuay over 2 years ago - 1 comment

#162 - [BUG, ENH] Update tutorial and documentation

Pull Request - State: closed - Opened by SamGuay over 2 years ago - 1 comment

#161 - [WIP][BF] dcm2bids_helper

Pull Request - State: closed - Opened by arnaudbore over 2 years ago

#160 - Can't use --forceDcm2niix option with dcm2bids_helper

Issue - State: closed - Opened by SamGuay over 2 years ago
Labels: bug

#159 - dcm2bids_scaffold needs a refresher

Issue - State: closed - Opened by SamGuay over 2 years ago - 1 comment
Labels: enhancement

#158 - Fix windows paths

Pull Request - State: closed - Opened by arnaudbore over 2 years ago - 1 comment

#157 - [WIP] Fix Entity Table Order

Pull Request - State: closed - Opened by arnaudbore over 2 years ago

#156 - [WIP] Remove python3.6

Pull Request - State: closed - Opened by arnaudbore over 2 years ago

#155 - reformat tables in oneliners

Pull Request - State: closed - Opened by SamGuay over 2 years ago - 1 comment

#154 - [FIX] Add a timeout when trying to retrieve dcm2bids version

Pull Request - State: closed - Opened by po09i over 2 years ago - 6 comments

#153 - Proper Way to Reprocess Images with Updated Conversion File?

Issue - State: closed - Opened by wasciutto over 2 years ago - 1 comment

#152 - Possible collaboration / merging efforts with `niix2bids`

Issue - State: closed - Opened by jcohenadad over 2 years ago

#151 - Automatic run number is not added to "IntendendFor" field in sidecar

Issue - State: closed - Opened by awiehler over 2 years ago - 1 comment

#150 - [DOC] fix a few typos in config docs

Pull Request - State: closed - Opened by keithcallenberg over 2 years ago

#149 - dcm2bids hangs when connected via ethernet without internet

Issue - State: closed - Opened by po09i over 2 years ago - 6 comments

#148 - Minor doc updates

Pull Request - State: closed - Opened by jstaph almost 3 years ago

#147 - dcm2bids fail to convert field mapping file

Issue - State: closed - Opened by YukunQu almost 3 years ago - 4 comments

#146 - dcm2bids_helper issue in tutorial

Issue - State: closed - Opened by andrew-yian-sun almost 3 years ago - 4 comments
Labels: bug

#145 - Pairing issue

Issue - State: closed - Opened by joeyv727 almost 3 years ago - 1 comment

#144 - Appending run entity violates ordering

Issue - State: closed - Opened by Lestropie almost 3 years ago - 3 comments

#143 - Query - matching based on series number rank

Issue - State: closed - Opened by richardbeare almost 3 years ago - 1 comment

#142 - Tutorials need update

Issue - State: closed - Opened by Remi-Gau almost 3 years ago - 2 comments
Labels: bug, documentation

#141 - Tutorial nii.s being overwritten?

Issue - State: closed - Opened by bgunasekera almost 3 years ago - 1 comment
Labels: documentation

#140 - Issue with dcm2bids_helper: No such file or directory: 'dcm2niix'

Issue - State: closed - Opened by aftmnel11 almost 3 years ago - 1 comment

#139 - Error non-zero exit status 2

Issue - State: closed - Opened by alexfoias about 3 years ago - 5 comments

#138 - IntendedFor references fields that do not exist on dataset with multiple runs

Issue - State: closed - Opened by aketchum15 about 3 years ago - 5 comments

#137 - List is out of range, do you know why?

Issue - State: closed - Opened by Kang1448 about 3 years ago - 1 comment

#136 - file name containing custom labels is not necessarily bids conform

Issue - State: closed - Opened by 1-w about 3 years ago - 1 comment

#135 - Do you know why dcm2bids is not working on my computer?

Issue - State: closed - Opened by Kang1448 about 3 years ago - 15 comments

#134 - Allow intendedFor to reference description IDs

Pull Request - State: closed - Opened by andrewrosss over 3 years ago - 1 comment

#133 - Additional options for "searchMethod"

Issue - State: closed - Opened by AlexHTreacher over 3 years ago - 1 comment

#132 - FALSE run?

Issue - State: closed - Opened by jewellewej over 3 years ago - 1 comment

#131 - Fix #130

Pull Request - State: closed - Opened by SamGuay over 3 years ago

#130 - Dcm2bids tutorial pages is "off"

Issue - State: closed - Opened by munoztd0 over 3 years ago - 3 comments

#129 - possible to label with files run-01 if only instance?

Issue - State: closed - Opened by dpagliaccio over 3 years ago - 2 comments

#128 - [BUG, ENH] - fix erroneous install command

Pull Request - State: closed - Opened by SamGuay over 3 years ago

#127 - moved name to string conversion outside if statement

Pull Request - State: closed - Opened by 1-w over 3 years ago - 6 comments

#126 - none-string value for 'name' param in compare function throws error

Issue - State: closed - Opened by 1-w over 3 years ago - 1 comment

#125 - Make dockerhub push automatic

Issue - State: closed - Opened by arnaudbore over 3 years ago - 1 comment

#124 - update doc with GH discussions

Pull Request - State: closed - Opened by SamGuay over 3 years ago

#122 - [ENH, FIX] Update documentation based on #120

Pull Request - State: closed - Opened by SamGuay over 3 years ago - 3 comments

#121 - Update Zenodo to match released code

Issue - State: closed - Opened by SamGuay over 3 years ago - 2 comments

#120 - [ENH] - Documentation enhancement

Issue - State: closed - Opened by SamGuay over 3 years ago - 4 comments
Labels: enhancement, documentation

#119 - conda package

Issue - State: closed - Opened by arnaudbore over 3 years ago - 2 comments

#118 - Update doc

Pull Request - State: closed - Opened by arnaudbore over 3 years ago

#117 - Add containers

Pull Request - State: closed - Opened by arnaudbore over 3 years ago - 1 comment

#116 - Update Singularity recipe

Pull Request - State: closed - Opened by pn2200 over 3 years ago - 2 comments

#115 - Cannot build singularity image based on current recipe

Issue - State: closed - Opened by pn2200 over 3 years ago - 1 comment