Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / UK-IPOP/drug-extraction issues and pull requests

#85 - _meta

Issue - State: closed - Opened by cdelcher 6 months ago - 1 comment

#83 - Update clean function to specifically allow hyphens. Resolves #82.

Pull Request - State: closed - Opened by nanthony007 7 months ago - 1 comment

#81 - CSV Parser Error: invalid UTF-8

Issue - State: closed - Opened by Knoxort 10 months ago - 1 comment

#80 - Update major changes for v0.2

Pull Request - State: closed - Opened by nanthony007 over 1 year ago - 6 comments

#79 - Publish drug extraction v2

Issue - State: closed - Opened by nanthony007 over 1 year ago - 1 comment
Labels: enhancement

#78 - Progress bar shows invalid progress when parsing multi-line csv records

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug

#77 - Fix parens replacement issue

Pull Request - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#76 - parens detection

Issue - State: closed - Opened by cdelcher over 2 years ago - 1 comment
Labels: bug

#75 - New analytical points

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment
Labels: analysis

#74 - File input issues.

Pull Request - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#73 - Analyze fails if no matches found

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#72 - JSONL output

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, cli

#71 - Web README is the same as CLI README...

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: documentation

#70 - Progress bar breaks with null records

Pull Request - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#69 - Remove excess nesting in JSONL.

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#68 - Add upset plot to de-workflow

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment
Labels: enhancement, workflow

#67 - Accept JSON into CLI app

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment
Labels: enhancement, cli

#66 - Cannot handle multi-line text string in csv

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, cli

#65 - CSV output has incorrect columns?

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, cli

#64 - On CLI, when fail to pass max-edits or thresh there prompt doesn't do anything

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, cli

#63 - Make `de-workflow` accept one OR two target columns

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement, workflow

#62 - Implement caching in CLI

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment
Labels: enhancement, cli

#61 - Specify rx-class-relasource

Issue - State: closed - Opened by nanthony007 over 2 years ago - 2 comments
Labels: bug, cli, web

#60 - Progress bar breaks with null records

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, cli

#59 - JSONL output is unnecessarily nested

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement, cli

#58 - Allow single word searching in CLI

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, enhancement, cli

#57 - Fix max-edits options

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, cli

#56 - Header parsing errors in CLI

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, cli

#55 - Limit options in de-workflow

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, workflow

#54 - Adding chart to workflow

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment
Labels: enhancement, workflow

#53 - de-workflow --help

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: bug, documentation, workflow

#52 - Add de-workflow

Pull Request - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#51 - Add WASM to Website

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement, help wanted, core, web, performance

#50 - Move Fetch Request to CLI

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#49 - Nanthony007/issue45

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#48 - Fill out README x3

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: documentation

#47 - Drug Fetching

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#46 - Add examples

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: documentation, good first issue, help wanted, CodeCleanup

#45 - Uplift Errors

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: CodeCleanup

#43 - Cleanup Code

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#41 - Add rx-class based drug extraction

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#39 - Add preliminary interactive support.

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#38 - Could allow multiple target-text columns

Issue - State: closed - Opened by nanthony007 over 2 years ago - 2 comments
Labels: enhancement

#36 - Implement csv output option.

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#35 - Implement SearchInput type.

Pull Request - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#34 - Add interactive support

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement

#33 - Make `id-column` parameter optional.

Pull Request - State: closed - Opened by nanthony007 over 2 years ago - 1 comment

#32 - Add progress bar.

Pull Request - State: closed - Opened by nanthony007 over 2 years ago - 2 comments

#31 - Migrate to Clap

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#30 - Migrate to clap

Issue - State: closed - Opened by nanthony007 over 2 years ago

#29 - Code Cleanup

Issue - State: closed - Opened by nanthony007 over 2 years ago - 11 comments
Labels: bug, documentation, CodeCleanup

#28 - Make `record_id` Optional

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement

#27 - Add support for file-based configuration (clap migration)

Issue - State: closed - Opened by nanthony007 over 2 years ago - 4 comments
Labels: enhancement

#26 - Nanthony007/issue18

Pull Request - State: closed - Opened by nanthony007 over 2 years ago

#25 - Add progress bar, colorized terminal output?

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment
Labels: enhancement, good first issue

#24 - Add website functionality

Issue - State: closed - Opened by nanthony007 over 2 years ago - 2 comments
Labels: enhancement

#23 - Add report-style output for algorithm

Issue - State: closed - Opened by nanthony007 over 2 years ago - 2 comments
Labels: enhancement, help wanted

#22 - Customize limit filter

Issue - State: closed - Opened by nanthony007 over 2 years ago - 1 comment
Labels: enhancement

#21 - Implement output types

Issue - State: closed - Opened by nanthony007 over 2 years ago - 4 comments
Labels: enhancement

#20 - Add support for drug-based extraction

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement

#18 - Add support for multi-word simple search

Issue - State: closed - Opened by nanthony007 over 2 years ago

#17 - Merge first functioning Rust program

Pull Request - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement

#16 - Add script to parse log files?

Issue - State: closed - Opened by nanthony007 over 2 years ago
Labels: enhancement

#15 - Web tool outputs to executable directory

Issue - State: closed - Opened by nanthony007 almost 3 years ago - 2 comments
Labels: enhancement

#14 - CLI tool does not convert to csv

Issue - State: closed - Opened by nanthony007 almost 3 years ago - 1 comment
Labels: bug

#13 - Add tests

Issue - State: closed - Opened by nanthony007 about 3 years ago
Labels: documentation, enhancement

#10 - Windows support fails

Issue - State: closed - Opened by nanthony007 about 3 years ago

#9 - On server, when extract fails, server goes to 404

Issue - State: closed - Opened by nanthony007 about 3 years ago - 2 comments
Labels: bug

#8 - Add Contributing.md for new contributors.

Issue - State: closed - Opened by nanthony007 about 3 years ago - 1 comment
Labels: documentation

#7 - Update website documentation

Issue - State: closed - Opened by nanthony007 about 3 years ago
Labels: documentation

#6 - Add clean and strict flags to server UI

Issue - State: closed - Opened by nanthony007 about 3 years ago - 1 comment
Labels: enhancement

#5 - Insufficient Docstrings

Issue - State: closed - Opened by nanthony007 about 3 years ago
Labels: documentation

#4 - Levenshtein to Jaro Winkler

Issue - State: closed - Opened by nanthony007 about 3 years ago - 1 comment

#3 - Merge for first beta release.

Pull Request - State: closed - Opened by nanthony007 about 3 years ago

#2 - Golang refactor

Pull Request - State: closed - Opened by nanthony007 about 3 years ago

#1 - Switch to Golang.

Pull Request - State: closed - Opened by nanthony007 about 3 years ago