UCL/cathpy issues and pull requests

#23 - Bump requests from 2.21.0 to 2.31.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#22 - Bump redis from 3.5.2 to 4.4.4

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#21 - Bump redis from 3.5.2 to 4.5.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#20 - Bump celery from 4.4.2 to 5.2.2

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#19 - GH18: correct typo with bool arg type

Pull Request - State: closed - Opened by sillitoe almost 3 years ago

#18 - error running cath-funfhmmer-api

Issue - State: closed - Opened by sillitoe almost 3 years ago

#17 - fix metadata parser in fasta headers

Pull Request - State: closed - Opened by sillitoe over 3 years ago - 1 comment

#16 - bugfix/013: upgrade cath tools

Pull Request - State: closed - Opened by sillitoe over 3 years ago - 1 comment

#15 - bugfix/014: fix funfam tests

Pull Request - State: closed - Opened by sillitoe over 3 years ago - 2 comments

#14 - tests broken with update to cath v4.3

Issue - State: closed - Opened by sillitoe over 3 years ago

#13 - Unable to parse/process resolve-hits input data file "Pfam-A_notc_18.out" of format hmmsearch_out. Error was: Failed to parse a number (of type j) from CS

Issue - State: closed - Opened by bordin89 over 3 years ago - 7 comments

#12 - Header parsing problems when whitespace in Fasta header

Issue - State: closed - Opened by rauerc about 4 years ago - 1 comment

#11 - Ignoring GS record with incorrect columns

Issue - State: open - Opened by bordin89 about 4 years ago - 6 comments

#10 - Add metrics to alignment summary (average + std dev length of sequences)

Issue - State: open - Opened by sillitoe over 4 years ago
Labels: enhancement

#9 - Header parsing fails when multiple '-' in header (e.g. negative starting boundary)

Issue - State: closed - Opened by bordin89 over 4 years ago - 1 comment

#8 - Provide sequence alignment from FunFam scan results

Issue - State: open - Opened by sillitoe over 4 years ago

#7 - Indentation error + Error-Unable to parse alignment (after fixing indentation errors) + example.aln file missing

Issue - State: open - Opened by vaishaliwaman over 4 years ago - 7 comments

#6 - bugfix

Pull Request - State: closed - Opened by shouldsee over 4 years ago - 2 comments

#5 - Add flag to cathpy-scorecons-align for scorecons conservation scores dumps

Issue - State: open - Opened by bordin89 over 4 years ago

#4 - Installation process error while using cath-align-scorecons

Issue - State: closed - Opened by bordin89 over 5 years ago - 1 comment

#3 - testing the git workflow documentation

Pull Request - State: closed - Opened by sillitoe over 5 years ago

#2 - Add no gap parameter to groupsim

Pull Request - State: closed - Opened by sayonidas03 about 6 years ago

#1 - Add Groupsim no_gap_cutoof script and readme

Pull Request - State: closed - Opened by sayonidas03 about 6 years ago - 2 comments

Ecosyste.ms: Issues

GitHub / UCL/cathpy issues and pull requests