Tsjerk/Insane issues and pull requests

#85 - How to make a hole at the center of the membrane instead of the origin (0,0)?

Issue - State: open - Opened by John-zzh about 2 months ago

#84 - Running Simulations with Generated .gro/.top Files

Issue - State: closed - Opened by zamydm 3 months ago

#83 - Merge in dual Martini 2 and 3 support to main

Pull Request - State: closed - Opened by Ingolfsson 6 months ago

#82 - Python3

Issue - State: closed - Opened by farmacyst99 7 months ago - 2 comments

#81 - Insane and GoMartini - Charge determination

Issue - State: open - Opened by qoraj 8 months ago - 3 comments

#80 - Specifying lipid ratio in outer and inner leaflet

Issue - State: closed - Opened by kong1-731 almost 2 years ago - 1 comment

#79 - NameError: name 'xrange' is not defined

Issue - State: open - Opened by sbhakat about 2 years ago - 2 comments

#78 - Insane cubic pbc doesn't respect -d flag

Issue - State: closed - Opened by BartBruininks over 2 years ago - 1 comment

#77 - cannot convert string to float

Issue - State: closed - Opened by BartBruininks over 2 years ago - 1 comment

#76 - Fixing typos in README.md

Pull Request - State: closed - Opened by amiralih over 2 years ago - 1 comment

#75 - POP2 bead name inconsistencies

Issue - State: open - Opened by biomolsim over 2 years ago

#74 - Python 2 scripts not working in Python 3.X

Issue - State: closed - Opened by qinyuz14 over 2 years ago - 1 comment

#73 - Addition of lipids with available .itp files

Issue - State: open - Opened by skaswur over 2 years ago - 1 comment

#72 - python3

Pull Request - State: closed - Opened by Tsjerk over 2 years ago

#71 - python 3 compatibility

Issue - State: closed - Opened by xiki-tempula over 2 years ago - 1 comment

#70 - Histidine charge error

Issue - State: closed - Opened by biomolsim over 2 years ago - 2 comments

#69 - ModuleNotFoundError: No module named 'core' / Thylakoid system building w/ martini3

Issue - State: open - Opened by palbanese almost 3 years ago - 3 comments

#68 - Updated 2021 Phosphatidylinositde lipids added to lipid_data

Pull Request - State: closed - Opened by ojeda-e almost 3 years ago

#67 - Current build fails

Issue - State: closed - Opened by fgrunewald over 3 years ago - 6 comments

#66 - Updates for python 3

Pull Request - State: closed - Opened by jbarnoud about 4 years ago - 1 comment

#65 - python3 version

Issue - State: closed - Opened by fgrunewald about 4 years ago - 1 comment

#64 - How build micelle and double bilayer

Issue - State: open - Opened by georopon about 4 years ago

#63 - Respect original topology headers/preprocessing options

Issue - State: open - Opened by ijpulidos over 4 years ago

#62 - Problem with Cardiolipin

Issue - State: closed - Opened by sizeineb over 4 years ago

#61 - Raise an exception when the PBC shape is invalid

Pull Request - State: closed - Opened by jbarnoud over 6 years ago - 1 comment

#60 - Helping out

Issue - State: open - Opened by mimischi over 6 years ago - 1 comment

#59 - Hopefully fix PDB file writing

Pull Request - State: closed - Opened by jbarnoud over 6 years ago - 1 comment

#58 - Regression tests work by directories

Pull Request - State: closed - Opened by jbarnoud almost 7 years ago - 1 comment

#57 - Add codecov support

Pull Request - State: closed - Opened by jbarnoud almost 7 years ago - 1 comment

#56 - Make travis build the zip package

Pull Request - State: closed - Opened by jbarnoud almost 7 years ago

#55 - Make resource files available in the zip package

Pull Request - State: closed - Opened by jbarnoud almost 7 years ago - 1 comment

#54 - Add forgotten lipid.dat

Pull Request - State: closed - Opened by jbarnoud almost 7 years ago

#53 - Include data/*.dat in the installed package

Pull Request - State: closed - Opened by jbarnoud almost 7 years ago - 4 comments

#52 - Restore iteration over old topology lipids

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#51 - Issue building a membrane with the old lipid topologies

Issue - State: closed - Opened by msidore about 7 years ago - 1 comment

#50 - Add tests for the absolute number of lipids

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#49 - Fix absolute

Pull Request - State: closed - Opened by jbarnoud about 7 years ago - 1 comment

#48 - Wrong number of lipid when using absolute numbers

Issue - State: closed - Opened by jbarnoud about 7 years ago

#47 - Missing lipids

Issue - State: closed - Opened by mimischi about 7 years ago - 1 comment

#46 - Apply the simopt.opt_func decorator

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#45 - please add DBG1 to insane

Issue - State: open - Opened by 1liuyang1 about 7 years ago - 1 comment

#44 - PDB writer does not truncate atom and residue names

Issue - State: closed - Opened by jbarnoud about 7 years ago - 1 comment

#43 - Python call

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#42 - Fix div per 0 when the prot is out of the membrane

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#41 - Update a link in the README

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#40 - Python3 compatibility

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#39 - Back to dev

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#38 - Add a readme

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#37 - Update travis

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#36 - Error calculating the charge with -salt

Issue - State: closed - Opened by jbarnoud about 7 years ago - 1 comment

#35 - Even better tests

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#34 - Make pylint happier with the tests

Pull Request - State: closed - Opened by jbarnoud about 7 years ago

#33 - Rescaling for absolute number of lipids

Issue - State: open - Opened by Tsjerk about 7 years ago

#32 - Absolute number of lipids kind of works

Pull Request - State: closed - Opened by jbarnoud about 7 years ago - 2 comments

#31 - Test GRO file equality based on semantics

Pull Request - State: closed - Opened by jbarnoud about 7 years ago - 1 comment

#30 - Improve test procedure

Pull Request - State: closed - Opened by jbarnoud about 7 years ago