TripalCultivate/TripalCultivate-Phenotypes issues and pull requests

#104 - Updates to docker/workflows based on PR tripal/tripal#1951 and base#23.

Pull Request - State: closed - Opened by laceysanderson about 2 months ago
Labels: Group 0 - General, Group 5 | Automated Testing | Performance

#103 - G0.103 Update docker to meet the changes in Tripal PR #1951

Issue - State: closed - Opened by laceysanderson about 2 months ago
Labels: Group 0 - General, Group 5 | Automated Testing | Performance

#102 - Switch tests to use chado_connection consistently.

Pull Request - State: closed - Opened by laceysanderson 2 months ago - 1 comment
Labels: Group 5 | Automated Testing | Performance

#101 - G4.100 split row into columns

Pull Request - State: closed - Opened by reynoldtan 2 months ago - 2 comments

#100 - G4.100 - Split Row into Columns

Issue - State: open - Opened by reynoldtan 2 months ago
Labels: Group 4 - API | Services | Plugins

#99 - G4.89 header validator

Pull Request - State: open - Opened by reynoldtan 2 months ago

#98 - G4.88 file validators

Pull Request - State: open - Opened by reynoldtan 2 months ago

#97 - [Bug] Web encountered an error when method short name is empty

Issue - State: open - Opened by reynoldtan 2 months ago
Labels: bug - potential

#96 - G4.87 revise genus validator

Pull Request - State: closed - Opened by reynoldtan 3 months ago

#95 - G4.93 Validator Setters

Pull Request - State: open - Opened by laceysanderson 3 months ago - 1 comment
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#94 - G4.92 Update validator base, annotation and interface

Pull Request - State: closed - Opened by laceysanderson 3 months ago - 5 comments

#93 - G4.93 Develop a number of setter traits for use with configuring validators.

Issue - State: open - Opened by laceysanderson 3 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#92 - G4.92 Update annotation, interface and validator base with new design

Issue - State: closed - Opened by laceysanderson 3 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#91 - G4.91 Remove all old style validator references (i.e. scope, title, details and status)

Issue - State: open - Opened by laceysanderson 3 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#90 - G4.90 Update trait importer to use only new style validators

Issue - State: open - Opened by laceysanderson 3 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#89 - G4.89 Updates header validator into new style validator

Issue - State: open - Opened by laceysanderson 3 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#88 - G4.88 Split FILE validator into new style validators.

Issue - State: open - Opened by laceysanderson 3 months ago - 2 comments
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#87 - G4.87 Split GENUS validator into new style validators.

Issue - State: closed - Opened by laceysanderson 3 months ago - 4 comments
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#86 - G4.86 Update Trait Importer formValidate to use new return value style.

Issue - State: open - Opened by laceysanderson 3 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#85 - G4.85 Update Trait Data Validators

Issue - State: open - Opened by laceysanderson 3 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#84 - Fixes bug in ontology configuration form

Pull Request - State: closed - Opened by reynoldtan 4 months ago

#83 - [BUG] CV (trait, method and unit) configuration value should be unique for genus

Issue - State: closed - Opened by reynoldtan 4 months ago
Labels: bug - potential

#82 - G4.82 Revisit the use of scope by the Validator API

Issue - State: open - Opened by carolyncaron 4 months ago - 6 comments
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#81 - G4.78 fix trait service getters

Pull Request - State: closed - Opened by reynoldtan 4 months ago - 1 comment

#80 - G4.80 May need a validator to check for "reasonably sanitized" inputs

Issue - State: open - Opened by carolyncaron 4 months ago
Labels: Group 4 - API | Services | Plugins

#79 - G4.76 Step 2 --Remove validator TraitImportValues and utilize the 3 newly added validators by the Traits Importer

Pull Request - State: closed - Opened by carolyncaron 4 months ago - 2 comments

#78 - G4.78 - The get functions in the Traits Service do not handle more than one relationship between trait and method, or method and unit

Issue - State: closed - Opened by carolyncaron 4 months ago - 1 comment
Labels: Group 4 - API | Services | Plugins, bug - confirmed

#77 - G4.76 STEP 1 --Divides trait import value plugin instance into 3 separate instances

Pull Request - State: closed - Opened by carolyncaron 5 months ago - 6 comments

#76 - G4.76 - Divide Trait Import Value plugin instance into 3 separate instances

Issue - State: closed - Opened by carolyncaron 5 months ago
Labels: Group 2 - Data Importing, Group 4 - API | Services | Plugins

#75 - Install modules in dockerfile.

Pull Request - State: closed - Opened by laceysanderson 5 months ago

#74 - Update dependencies and use new theme/base

Pull Request - State: closed - Opened by laceysanderson 6 months ago - 2 comments
Labels: Group 0 - General

#73 - G0.73 Update dependancies to include new theme/base

Issue - State: closed - Opened by laceysanderson 7 months ago
Labels: Group 0 - General

#72 - G0.72 Use the new Tripal Cultivate Theme in our dockers

Issue - State: closed - Opened by laceysanderson 8 months ago - 1 comment
Labels: Group 0 - General

#71 - Updates our testing to include PHP 8.3 and Drupal 10.2

Pull Request - State: closed - Opened by laceysanderson 8 months ago - 2 comments
Labels: Group 5 | Automated Testing | Performance

#70 - G5.70 Improve tests and to use test traits.

Issue - State: open - Opened by laceysanderson 8 months ago - 1 comment
Labels: Group 5 | Automated Testing | Performance

#69 - Fixes the "Cannot insert term" Bug and some other new test failures on the main branch

Pull Request - State: closed - Opened by laceysanderson 9 months ago - 2 comments
Labels: bug - confirmed

#68 - [Bug] Errors on 4.x branch

Issue - State: closed - Opened by laceysanderson 9 months ago - 1 comment
Labels: bug - potential

#67 - G bug.60 subsequent uploads

Pull Request - State: closed - Opened by reynoldtan 9 months ago

#66 - G4.58 phenoshare values validator

Pull Request - State: closed - Opened by reynoldtan 10 months ago - 1 comment

#65 - Creates more test cases for file validator

Pull Request - State: closed - Opened by reynoldtan 10 months ago

#64 - Fixes failed test: pdf as tsv

Pull Request - State: closed - Opened by reynoldtan 10 months ago - 2 comments

#63 - [Design] Phenotype Importer Columns / Metadata

Issue - State: open - Opened by laceysanderson 10 months ago - 3 comments
Labels: bug - potential

#62 - G1.62 Phenomic Experiments vs Studies

Issue - State: open - Opened by laceysanderson 10 months ago
Labels: Group 1 - Content Types | Ontology | Fields, HIGH PRIORITY

#61 - G5.61 Automated testing for DataFile Validator is not covering what we expect it to based on the test code.

Issue - State: closed - Opened by laceysanderson 10 months ago

#60 - [Bug] When first file passes validation, subsequent uploads without page refresh do not trigger errors.

Issue - State: closed - Opened by laceysanderson 10 months ago - 2 comments
Labels: bug - potential

#59 - [Bug] Changing the extension on a PDF to TXT is not caught by the Importer if OS changes mime/type too

Issue - State: closed - Opened by laceysanderson 10 months ago - 1 comment
Labels: bug - potential

#58 - G4.58 - Phenotypes Share Values Validator

Issue - State: open - Opened by reynoldtan 10 months ago - 2 comments
Labels: Group 4 - API | Services | Plugins

#57 - G1.57 Upgrade use of chado_insert_cvterm() to use the Tripal 4 terms service.

Issue - State: open - Opened by laceysanderson 10 months ago
Labels: Group 1 - Content Types | Ontology | Fields

#56 - Update docker to import content types + run tripal job.

Pull Request - State: closed - Opened by laceysanderson 10 months ago - 1 comment
Labels: Group 0 - General

#55 - G0.55 Import content types in our docker

Issue - State: closed - Opened by laceysanderson 10 months ago

#54 - G2.53 trait importer

Pull Request - State: closed - Opened by reynoldtan 10 months ago - 3 comments

#53 - G2.53 - Phenotypic Trait Importer

Issue - State: closed - Opened by reynoldtan 10 months ago
Labels: Group 2 - Data Importing

#52 - G0.51 - Validation Limit

Issue - State: open - Opened by reynoldtan 11 months ago
Labels: Group 0 - General

#51 - G4.48 column headers validator

Pull Request - State: closed - Opened by reynoldtan 11 months ago

#50 - G4.47 datafile validator

Pull Request - State: closed - Opened by reynoldtan 11 months ago

#49 - G4.47 datafile validator

Pull Request - State: closed - Opened by reynoldtan 11 months ago

#48 - G4.48-Header Validator

Issue - State: closed - Opened by reynoldtan 11 months ago - 1 comment

#47 - G4.47 Data File Validator

Issue - State: closed - Opened by reynoldtan 11 months ago - 1 comment

#46 - G5.45 update docker paths

Pull Request - State: closed - Opened by laceysanderson 11 months ago
Labels: Group 5 | Automated Testing | Performance

#45 - G5.45 Update Docker paths

Issue - State: closed - Opened by laceysanderson 11 months ago - 1 comment
Labels: Group 5 | Automated Testing | Performance

#44 - Removes unecessary slash char in namespace

Pull Request - State: closed - Opened by reynoldtan 11 months ago

#43 - Typing errors

Issue - State: closed - Opened by reynoldtan 11 months ago
Labels: bug - potential

#42 - G4.41 genus validator

Pull Request - State: closed - Opened by reynoldtan 11 months ago - 4 comments

#41 - G4.41 - Genus Validator

Issue - State: closed - Opened by reynoldtan 11 months ago
Labels: Group 4 - API | Services | Plugins

#40 - G2.39 template generator

Pull Request - State: closed - Opened by reynoldtan 12 months ago - 1 comment

#39 - G2.39 - Data Collection Template File Generator

Issue - State: closed - Opened by reynoldtan 12 months ago
Labels: Group 2 - Data Importing

#38 - G4.37 validation api

Pull Request - State: closed - Opened by reynoldtan 12 months ago

#37 - G4.02 Validation API

Issue - State: closed - Opened by reynoldtan 12 months ago

#36 - Fixes missing genus post-install

Pull Request - State: closed - Opened by reynoldtan about 1 year ago

#35 - [Bug] Unable to find configuration for genus added after terms installed + form loaded once before

Issue - State: closed - Opened by laceysanderson about 1 year ago - 1 comment
Labels: bug - potential

#34 - G2.10 importer api

Pull Request - State: closed - Opened by reynoldtan about 1 year ago - 6 comments

#33 - Use new noChado Tripaldocker images.

Pull Request - State: closed - Opened by laceysanderson about 1 year ago - 1 comment
Labels: Group 0 - General, bug - confirmed

#32 - G0.06 configuration ontology and terms

Pull Request - State: closed - Opened by reynoldtan about 1 year ago - 1 comment

#31 - [Bug] Homepage WSOD Chado Schema error on Drupal 10.0.x and 8.1

Issue - State: closed - Opened by laceysanderson over 1 year ago - 2 comments
Labels: bug - confirmed