TommyJones/tidylda issues and pull requests

#76 - JOSS review: Comments on the paper

Issue - State: closed - Opened by maximelenormand 3 months ago - 3 comments

#75 - JOSS Review: Paper review comments

Issue - State: closed - Opened by hassaniazi 3 months ago - 5 comments

#74 - JOSS Review: Minor documentation updates

Issue - State: closed - Opened by hassaniazi 3 months ago - 3 comments

#73 - JOSS review: Changelog, README and Vignettes

Issue - State: closed - Opened by maximelenormand 4 months ago - 4 comments

#72 - JOSS review: Duplicated license files

Issue - State: closed - Opened by maximelenormand 4 months ago - 6 comments

#71 - Remove references to being experimental

Issue - State: closed - Opened by TommyJones 4 months ago - 2 comments
Labels: documentation, administrative

#70 - `recover_counts_from_probs` gives incorrect counts, at least some times

Issue - State: open - Opened by TommyJones about 1 year ago
Labels: bug

#69 - Make tidylda consistent with Matrix update

Issue - State: closed - Opened by TommyJones almost 2 years ago - 1 comment
Labels: CRAN

#68 - Arguments that control computational aspects should be in a "control" object

Issue - State: open - Opened by TommyJones almost 3 years ago
Labels: enhancement

#67 - augment() does not respect columns passed to it

Issue - State: closed - Opened by TommyJones almost 3 years ago - 1 comment
Labels: enhancement

#66 - refit.tidylda does not propagate eta forward correctly

Issue - State: closed - Opened by TommyJones almost 3 years ago - 1 comment
Labels: bug

#65 - Streaming

Pull Request - State: closed - Opened by TommyJones about 3 years ago

#64 - Issue47

Pull Request - State: closed - Opened by TommyJones about 3 years ago

#63 - add ability to prune topics based on certain criteria

Issue - State: open - Opened by TommyJones about 3 years ago
Labels: enhancement

#62 - Implement additional uses for refit.tidylda()

Issue - State: closed - Opened by TommyJones about 3 years ago - 2 comments
Labels: enhancement, CRAN

#61 - move documentation of tidylda object from new_tidylda() to tidylda()

Issue - State: closed - Opened by TommyJones about 3 years ago - 2 comments
Labels: documentation, CRAN

#60 - Documentation for `tidylda()` references wrong package for R-squared

Issue - State: closed - Opened by TommyJones about 3 years ago - 1 comment
Labels: documentation, CRAN

#59 - fixing issue 58

Pull Request - State: closed - Opened by TommyJones about 3 years ago

#58 - Gibbs sampler makes erroneous assumption about magnitude of rows of eta

Issue - State: closed - Opened by TommyJones about 3 years ago - 1 comment
Labels: bug, CRAN

#57 - Better Progress bar

Pull Request - State: closed - Opened by TommyJones about 3 years ago - 1 comment

#56 - Remove textmineR dependencies

Issue - State: closed - Opened by TommyJones about 3 years ago - 2 comments
Labels: CRAN, administrative

#55 - Update dates (e.g. copyright) to 2021

Issue - State: closed - Opened by TommyJones about 3 years ago - 1 comment
Labels: CRAN, administrative

#54 - Add startup message about unstable API

Issue - State: closed - Opened by TommyJones about 3 years ago - 1 comment
Labels: CRAN, administrative

#53 - Revert Gibbs sampler back to sequential

Pull Request - State: closed - Opened by TommyJones about 3 years ago - 1 comment

#52 - Issues 49 50

Pull Request - State: closed - Opened by TommyJones about 3 years ago

#51 - Change algorithm for setting prior on new topics in refit.tidylda

Issue - State: open - Opened by TommyJones about 3 years ago
Labels: enhancement

#50 - change algorithm for adding new vocab in refit.tidylda

Issue - State: closed - Opened by TommyJones about 3 years ago - 2 comments
Labels: enhancement, CRAN

#49 - Change refit.tidylda defaults

Issue - State: closed - Opened by TommyJones about 3 years ago - 1 comment
Labels: enhancement, CRAN

#48 - Revert to sequential Gibbs sampling

Issue - State: closed - Opened by TommyJones over 3 years ago - 1 comment
Labels: CRAN

#47 - Cannot create lexicon with large matrices

Issue - State: closed - Opened by TommyJones over 3 years ago - 1 comment
Labels: bug

#46 - Run on R 4.02

Issue - State: closed - Opened by harryahlas over 3 years ago - 3 comments

#45 - Better progress bar at the C++ level

Issue - State: closed - Opened by TommyJones about 4 years ago - 1 comment
Labels: enhancement, CRAN

#44 - have "distribution" option for predictions

Issue - State: closed - Opened by TommyJones about 4 years ago - 1 comment
Labels: enhancement

#43 - replace `format_raw_lda_outputs` with `new_tidylda`

Issue - State: closed - Opened by TommyJones about 4 years ago - 1 comment

#42 - Don't let tidylda() fail after the gibbs sampler succeeds

Issue - State: closed - Opened by TommyJones about 4 years ago - 2 comments

#41 - Find and sort code bottleneck

Issue - State: closed - Opened by TommyJones about 4 years ago - 1 comment

#40 - Randomly shuffle document indices between iterations when in parallel

Issue - State: closed - Opened by TommyJones about 4 years ago - 2 comments
Labels: enhancement, wontfix

#39 - silence cmd check note

Issue - State: closed - Opened by TommyJones about 4 years ago - 1 comment
Labels: CRAN

#38 - Decrease number of imports

Issue - State: closed - Opened by TommyJones about 4 years ago

#37 - change `dtm` arguments to `data`

Issue - State: closed - Opened by TommyJones about 4 years ago - 4 comments
Labels: CRAN

#36 - Commonly get "log-probabilities have to be finite" error from `create_lexicon`

Issue - State: closed - Opened by TommyJones about 4 years ago - 4 comments
Labels: bug, CRAN

#35 - re-export commonly-used functions from the matrix package

Issue - State: closed - Opened by TommyJones about 4 years ago - 2 comments
Labels: enhancement

#34 - optimize alpha using fixed point iteration

Issue - State: open - Opened by TommyJones about 4 years ago

#33 - Write unit tests for parallel prediction and parallel refitting

Issue - State: closed - Opened by TommyJones about 4 years ago - 2 comments
Labels: CRAN

#32 - set up separate, non-CRAN, unit tests

Issue - State: closed - Opened by TommyJones about 4 years ago

#31 - A working version of a parallel gibbs sampler. It passes all tests.

Pull Request - State: closed - Opened by TommyJones about 4 years ago

#30 - Nail down that log likelihood calculation

Issue - State: open - Opened by TommyJones over 4 years ago - 1 comment

#29 - Use naming conventions to match STM

Issue - State: closed - Opened by TommyJones over 4 years ago - 4 comments
Labels: CRAN

#28 - Make gallery of example useage

Issue - State: open - Opened by TommyJones over 4 years ago - 3 comments
Labels: documentation, help wanted

#27 - remove armadillo matrices from create_lexicon

Issue - State: closed - Opened by TommyJones over 4 years ago - 1 comment

#26 - merge textminergibbs into main

Pull Request - State: closed - Opened by TommyJones over 4 years ago - 1 comment

#25 - Gibbs sampler is slow

Issue - State: closed - Opened by TommyJones over 4 years ago - 8 comments

#24 - averaging over burnin is incorrect

Issue - State: closed - Opened by TommyJones over 4 years ago - 1 comment

#23 - Build is unstable

Issue - State: closed - Opened by TommyJones over 4 years ago - 3 comments

#22 - Closing down issue 18

Pull Request - State: closed - Opened by TommyJones over 4 years ago

#21 - pulling in Brendan's changes

Pull Request - State: closed - Opened by TommyJones over 4 years ago

#20 - Properly handle rng for parallel sampling

Issue - State: closed - Opened by TommyJones over 4 years ago - 4 comments
Labels: CRAN

#19 - Replace RcppArmadillo::sample with something more stable

Issue - State: closed - Opened by TommyJones over 4 years ago - 2 comments

#18 - Use Armadillo and std objects in Gibbs sampler

Issue - State: closed - Opened by TommyJones over 4 years ago - 3 comments

#17 - Iss14

Pull Request - State: closed - Opened by TommyJones over 4 years ago

#16 - define behavior of refit.tidylda where there is no vocabulary overlap between old and new model

Issue - State: closed - Opened by TommyJones over 4 years ago - 2 comments

#15 - remove future map calls to mvrsquared

Issue - State: closed - Opened by TommyJones over 4 years ago - 1 comment

#14 - use RcppThread to parallelize create_lexicon

Issue - State: closed - Opened by TommyJones over 4 years ago - 5 comments

#13 - Doing some work needed pre-parallel that are good for master

Pull Request - State: closed - Opened by TommyJones over 4 years ago

#12 - Add optional progress bar for LDA fitting

Issue - State: closed - Opened by TommyJones over 4 years ago - 1 comment
Labels: duplicate

#11 - use RcppThread to parallelize Gibbs sampler

Issue - State: closed - Opened by TommyJones over 4 years ago - 5 comments

#10 - break out different component functions in Gibbs sampler

Issue - State: closed - Opened by TommyJones over 4 years ago - 3 comments

#9 - Optimize matrices in Gibbs sampler

Issue - State: closed - Opened by TommyJones over 4 years ago - 7 comments

#8 - Seeding topics in fitting a model

Issue - State: open - Opened by TommyJones over 4 years ago - 1 comment
Labels: enhancement

#7 - write an augment method

Issue - State: closed - Opened by TommyJones over 4 years ago - 4 comments
Labels: enhancement, CRAN

#6 - Test failing on R 4.0

Issue - State: closed - Opened by TommyJones over 4 years ago - 1 comment
Labels: bug

#5 - add progress bar for lda iterations

Issue - State: closed - Opened by TommyJones over 4 years ago - 2 comments
Labels: enhancement

#4 - "incorrect number of probabilities" error

Issue - State: closed - Opened by TommyJones over 4 years ago - 4 comments
Labels: bug

#3 - Allow users to tune batch size and more easily control the parallel framework in general

Issue - State: closed - Opened by TommyJones over 4 years ago - 2 comments
Labels: enhancement

#2 - call to `update` defaults to `stats::update` not `tidylda::update`

Issue - State: closed - Opened by TommyJones over 4 years ago - 2 comments
Labels: bug

#1 - Implement posterior method

Issue - State: closed - Opened by TommyJones over 4 years ago - 1 comment
Labels: enhancement, CRAN

GitHub / TommyJones/tidylda issues and pull requests