Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / Toepfer-Lab/cobramod issues and pull requests

#64 - Build(deps): Bump ws from 8.16.0 to 8.17.1

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#63 - Adjustments to integrate Codecov

Pull Request - State: closed - Opened by JanNiklasWeder 6 months ago - 1 comment

#62 - Fix/GitHub action

Pull Request - State: closed - Opened by JanNiklasWeder 6 months ago

#61 - Fix/GitHub action

Pull Request - State: closed - Opened by JanNiklasWeder 6 months ago

#60 - Limit parallel execution of GitHub actions

Pull Request - State: closed - Opened by JanNiklasWeder 6 months ago

#59 - New options for visualization

Pull Request - State: closed - Opened by JanNiklasWeder 6 months ago

#58 - Reformatting with [email protected].

Pull Request - State: closed - Opened by JanNiklasWeder 7 months ago

#57 - Behavior for error handling for missing "NAME" Line in KEGG entry files

Issue - State: closed - Opened by emarquezz 8 months ago - 2 comments
Labels: bug

#56 - BUGFIX: Readthedocs build

Pull Request - State: closed - Opened by cambordas 9 months ago

#55 - Merge branch 'feat/GitHubAction-PythonVersions' into dev/1.2.0

Pull Request - State: closed - Opened by cambordas 9 months ago

#54 - BUGFIX: Typos in GH workflow

Pull Request - State: closed - Opened by cambordas 9 months ago

#53 - Version 1.2.0

Pull Request - State: closed - Opened by cambordas 9 months ago
Labels: enhancement

#52 - fixed the bug that pandas DataFrame deprecated the append function

Pull Request - State: closed - Opened by LifeWorks 11 months ago - 1 comment

#51 - Drop support for Python 3.7 and add compatibility with latest COBRApy versions

Issue - State: closed - Opened by cambordas over 1 year ago - 1 comment
Labels: documentation, enhancement

#50 - 'set' object has no attribute 'get_by_id'

Issue - State: closed - Opened by Harry-Pollitt over 1 year ago - 2 comments
Labels: bug

#49 - Remove future deprecated functions

Issue - State: closed - Opened by cambordas about 2 years ago
Labels: enhancement

#48 - Adjustment of flake8 settings

Pull Request - State: closed - Opened by JanNiklasWeder about 2 years ago - 1 comment

#47 - add_crossreference output not valid SBML

Issue - State: closed - Opened by jthom17 about 2 years ago - 1 comment
Labels: bug

#45 - Feat/weekly test

Pull Request - State: closed - Opened by JanNiklasWeder over 2 years ago
Labels: bug

#44 - Weekly test

Pull Request - State: closed - Opened by JanNiklasWeder over 2 years ago

#43 - Fix/sol cyc

Pull Request - State: closed - Opened by JanNiklasWeder over 2 years ago

#41 - Addition of SolanaCyc to the default databases

Pull Request - State: closed - Opened by JanNiklasWeder over 2 years ago

#39 - Language

Pull Request - State: closed - Opened by JanNiklasWeder almost 3 years ago

#38 - Feat/data versioning

Pull Request - State: closed - Opened by JanNiklasWeder almost 3 years ago

#37 - NEW: Feat/data versioning

Pull Request - State: closed - Opened by cambordas about 3 years ago
Labels: bug, enhancement

#36 - FIX: Windows and MacOS problem in tests

Pull Request - State: closed - Opened by cambordas over 3 years ago - 1 comment
Labels: bug

#35 - HOTFIX: temporal actions for Linux

Pull Request - State: closed - Opened by cambordas over 3 years ago

#34 - FIX:Documentation and tweaks

Pull Request - State: closed - Opened by cambordas over 3 years ago - 1 comment
Labels: documentation, enhancement

#33 - Fix/language core

Pull Request - State: closed - Opened by JanNiklasWeder over 3 years ago

#32 - HOTFIX: Readme for pip

Pull Request - State: closed - Opened by cambordas over 3 years ago

#31 - FIX: genes from PMN and visualization colors. New HTML outputs.

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: bug, enhancement

#30 - Parser for PlantCyc

Pull Request - State: closed - Opened by JanNiklasWeder over 3 years ago
Labels: enhancement

#29 - FIX: New messages for logging

Pull Request - State: closed - Opened by cambordas over 3 years ago

#28 - FIX: Copys of Pathway working properly

Pull Request - State: closed - Opened by cambordas over 3 years ago

#27 - FIX: Transformation of Group to pathways

Pull Request - State: closed - Opened by cambordas over 3 years ago

#26 - Fix: New method for merge pathways

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#25 - New Workflow for testing, building and publishing.

Pull Request - State: closed - Opened by JanNiklasWeder over 3 years ago

#24 - HOTFIX: Fix for summary order in txt format

Pull Request - State: closed - Opened by JanNiklasWeder over 3 years ago
Labels: bug

#23 - Addition of a color scale for Escher

Pull Request - State: closed - Opened by JanNiklasWeder over 3 years ago
Labels: enhancement

#22 - FIX: Reactions regardless of addition of pathways

Pull Request - State: closed - Opened by cambordas over 3 years ago

#21 - HOTFIX: Update for graph and minor fixes

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: bug

#20 - FIX: non-zero-flux test uses solver tolerance

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: bug

#19 - UPDATE: Biocyc sub-databases integration. Fix for biocyc genes

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#18 - Improvement in logging information. Tweaks in creation and extension module

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#17 - Refactor: Reaction string standard from COBRApy

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#16 - Fix: Behaviour of genes for KEGG

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#15 - Addition of summary module

Pull Request - State: closed - Opened by JanNiklasWeder over 3 years ago - 1 comment
Labels: enhancement

#14 - Addition of genes

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#13 - Fix: Custom metabolites and reactions. Single-reaction pathways

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#12 - Refactoring of visualization

Pull Request - State: closed - Opened by cambordas over 3 years ago
Labels: enhancement

#11 - UPDATED: new directory core for main modules.

Pull Request - State: closed - Opened by cambordas almost 4 years ago
Labels: enhancement

#10 - Refactoring of reaction and metabolite functions

Pull Request - State: closed - Opened by cambordas almost 4 years ago

#9 - NEW: Visualization sub-package

Pull Request - State: closed - Opened by cambordas almost 4 years ago
Labels: enhancement

#8 - HOTFIX: missing reactions from _add_sequence fixed

Pull Request - State: closed - Opened by cambordas almost 4 years ago
Labels: bug

#7 - Add module documentation

Issue - State: closed - Opened by cambordas almost 4 years ago
Labels: documentation

#6 - Extend or change behavior of missing directories

Issue - State: closed - Opened by cambordas almost 4 years ago - 1 comment

#5 - HOTFIX: method _transform from Pathway fixed.

Pull Request - State: closed - Opened by cambordas almost 4 years ago
Labels: bug

#4 - Transform Group into Pathway

Pull Request - State: closed - Opened by cambordas almost 4 years ago
Labels: enhancement

#3 - Extending translation for pathways

Pull Request - State: closed - Opened by cambordas almost 4 years ago
Labels: enhancement

#2 - Adding translation methods

Pull Request - State: closed - Opened by cambordas almost 4 years ago
Labels: enhancement

#1 - Migrating CI pipelines to GitHub

Pull Request - State: closed - Opened by cambordas almost 4 years ago