TileDB-Inc/TileDB-ML issues and pull requests

#216 - Torch>=2.0 Unittest support

Pull Request - State: closed - Opened by ktsitsi 3 months ago - 4 comments

#215 - Pin the tensorflow version lower than 2.16

Pull Request - State: closed - Opened by ktsitsi 3 months ago - 1 comment

#214 - Test Newer TensorFlow Versions

Pull Request - State: open - Opened by Shelnutt2 3 months ago - 1 comment

#213 - set `CLOUD_MODELS = "models"`

Pull Request - State: closed - Opened by maarten-devries 9 months ago

#212 - Ensure metadata is a separate copy from model properties

Pull Request - State: closed - Opened by Shelnutt2 about 1 year ago

#211 - Store Long Model Previews in Array Metadata

Pull Request - State: closed - Opened by Shelnutt2 about 1 year ago - 1 comment

#210 - Update to support tensorflow >= 2.11

Pull Request - State: closed - Opened by Shelnutt2 over 1 year ago - 3 comments

#209 - Remove unused SharedObjectLoadingScope in tensorflow_keras

Pull Request - State: closed - Opened by Shelnutt2 over 1 year ago - 1 comment

#208 - Memory budget config parameter fix

Pull Request - State: closed - Opened by ktsitsi over 1 year ago

#207 - Improve PyTorch Performance with Multiple Workers and Shuffling

Pull Request - State: closed - Opened by georgeSkoumas over 1 year ago - 1 comment

#206 - Fixed Incomplete Retries Error Check

Pull Request - State: closed - Opened by georgeSkoumas over 1 year ago - 1 comment

#205 - Adding API docs for TileDB-ML

Pull Request - State: closed - Opened by ktsitsi over 1 year ago - 1 comment

#204 - Pass Map Function to Array Params - PyTorch

Pull Request - State: closed - Opened by georgeSkoumas over 1 year ago - 1 comment

#203 - Added Timestamp While Writing Models and Metadata

Pull Request - State: closed - Opened by georgeSkoumas almost 2 years ago - 1 comment

#202 - Fix the open timestamp so that fragments and metadata are written at the same time

Pull Request - State: closed - Opened by anastasop almost 2 years ago - 1 comment

#201 - Increase unit test coverage

Pull Request - State: closed - Opened by georgeSkoumas almost 2 years ago - 1 comment

#200 - Remove update attribute from model save

Pull Request - State: closed - Opened by georgeSkoumas almost 2 years ago - 1 comment

#199 - Moderate model refactoring

Pull Request - State: closed - Opened by gsakkis almost 2 years ago

#198 - Upagrade to TileDB-Py 0.19.0 - TileDB 2.13.0

Pull Request - State: closed - Opened by georgeSkoumas almost 2 years ago

#197 - Update mypy to 0.991

Pull Request - State: closed - Opened by gsakkis almost 2 years ago

#196 - Gsk/ch21380/upgrade ml model schema

Pull Request - State: closed - Opened by georgeSkoumas almost 2 years ago - 1 comment

#195 - Updates for Tensorflow 2.9+ & Pytorch 1.13

Pull Request - State: closed - Opened by gsakkis almost 2 years ago

#194 - Update precommit-hooks

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#193 - Improve DenseTensorSchema.key_range

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#192 - Add ConstrainedPartitionsIntRange

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#191 - Add support for slicing on key dimension [sparse arrays]

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#190 - Add support for slicing on non key indices [sparse arrays]

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#189 - Package _tensor_schema

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#188 - Support pytorch 1.11

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#187 - Support reading dense tensors from sparse arrays

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#186 - Remove SparseData

Pull Request - State: closed - Opened by gsakkis about 2 years ago

#185 - Reduce parametric tests

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#184 - Add support for slicing on non-key indices [final]

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#183 - Unbatched data loading support for PyTorchTileDBDataLoader

Pull Request - State: closed - Opened by gsakkis about 2 years ago - 1 comment

#182 - [Enhancement] Update Pull Request Guide

Pull Request - State: closed - Opened by georgeSkoumas about 2 years ago

#181 - Default to TensorKind.SPARSE_COO for sparse tensors

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#180 - Test _csr_to_coo_collate

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#179 - Add support for slicing on non-key indices

Pull Request - State: closed - Opened by KalyanPalepu over 2 years ago - 8 comments

#178 - Bump pytorch version to 1.12

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#177 - Fix PyTorchTileDBDataLoader to be iterable more than once

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#176 - [Hotfix] Fixed example notebooks

Pull Request - State: closed - Opened by ktsitsi over 2 years ago

#175 - Refactor models design and add TB as extra array

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 1 comment

#174 - CI for notebooks

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#173 - Introduce PyTorch DataPipes

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#172 - Avoid intermediate `sparse.COO` instances if possible

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#171 - Read from sparse TileDB arrays to ragged tensors

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#170 - Pass Through Arguments Tensorflow

Pull Request - State: closed - Opened by georgeSkoumas over 2 years ago - 1 comment

#169 - Refactor parametric test utils

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#168 - Bump minimum tensorflow to 2.6 and pytorch to 1.10

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#167 - Add ArrayParams.tensor_kind

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 2 comments

#166 - Decouple transform from TensorSchema

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#165 - pass dataloader params in Dataloader, pytorch tests update

Pull Request - State: closed - Opened by georgeSkoumas over 2 years ago - 1 comment

#164 - Take into account var-sized fields in SparseTensorSchema.max_partition_weight

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#163 - Array params import to readers

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 1 comment

#162 - Fix ArrayParams imports

Pull Request - State: closed - Opened by georgeSkoumas over 2 years ago

#161 - Read any number of arrays

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#160 - Update precommit hooks

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#159 - Make TensorSchema a dataclass

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#158 - Introducing ArrayParams as TF-PyTorch readers argument

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 1 comment

#157 - Support non-integer key dimension

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#156 - Remove `buffer_bytes` parameter

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#155 - Refactor data loaders to use InclusiveRange

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#154 - InclusiveRange abstraction

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#153 - Generate tensors for dimensions

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#152 - [CI] Pin protobuf

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#151 - Privatization of models/base and PytorchTileDBDataset

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 1 comment

#150 - Refactor TensorSchema

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#149 - Non-empty domain instead of full domain

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#148 - Determine default buffer size for sparse arrays

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#147 - Support integer dimensions with non-zero based domain

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#146 - Refactor reader tests

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#145 - Custom key dimension

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 3 comments

#144 - Adding early stopping callback to model notebooks

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 1 comment
Labels: question

#143 - [Hotfix] Re-run notebook examples for warnings and errors

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 1 comment
Labels: bug

#142 - Extract tensorboard callback logic in a separate module

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#141 - Pytorch tensorboard support save and load

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 1 comment
Labels: enhancement

#140 - Support tensorflow>2.5

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#139 - Improve dependency versioning, add CI for multiple dependency versions, fix support for older ML versions

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#138 - Τensorboard Callback Support

Pull Request - State: closed - Opened by ktsitsi over 2 years ago - 2 comments
Labels: enhancement

#137 - Always generate (x,y) tuples

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#136 - scipy.sparse for 2D arrays and optional CSR sparse tensors

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#135 - Bump tiledb to 0.14+

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#134 - Expose TileDB-ML version at runtime

Pull Request - State: closed - Opened by georgeSkoumas over 2 years ago - 1 comment

#133 - Separate tensor generation for x and y arrays

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 4 comments

#132 - Implement parallelized TensorflowTileDBDataset

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#131 - Add prefetch parameter to PyTorchTileDBDataLoader and TensorflowTileDBDataset

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#130 - Support nD-dim sparse arrays

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#129 - Split _batch_utils module

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#128 - Drop ThreadPoolExecutor for reading from x and y

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#127 - Faster batching for PyTorchTileDBDataLoader

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#126 - Replace shuffle parameter with shuffle buffer size

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#125 - Convert numpy arrays to dense tensors implicitly

Pull Request - State: closed - Opened by gsakkis over 2 years ago

#124 - Remove batch size from tensor generator

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

#123 - Add PyTorchTileDBDataLoader extending torch.utils.data.DataLoader

Pull Request - State: closed - Opened by gsakkis over 2 years ago - 1 comment

GitHub / TileDB-Inc/TileDB-ML issues and pull requests